mRNA_H-elongata_contig103237.270.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: D7G8A6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A6_ECTSI) HSP 1 Score: 370 bits (949), Expect = 9.280e-121 Identity = 178/206 (86.41%), Postives = 187/206 (90.78%), Query Frame = 1 Query: 1 QQIKSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSESAQSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 QQIK+LR+H GPVRSLDLAPG+GF+STSNDG+ARLWSLDG PLA MPHP T EGQP FVLQGCVL G GESVSVDESGGC+VWRGSE QS+PHPSGLWCVCALPNGDFATGCQDH VRVWTRAPERAAPAEV QAFD+ VIDGQTK GPSAVEIAALPKWEE+HATRGKSEGQVQVFQRAGKAIAAQWSAASS WIEVGEV Sbjct: 196 QQIKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERGQSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKTKQ-GPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEV 400
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: A0A836CND0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND0_9STRA) HSP 1 Score: 263 bits (671), Expect = 8.780e-80 Identity = 127/206 (61.65%), Postives = 158/206 (76.70%), Query Frame = 1 Query: 1 QQIKSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSESAQSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 +QI +L++H GPVRSLD+ P +GFMSTSNDG R+WS DG+ LA M HPP EGQP FVL GC L +GE V+VDE+G C+VWR ++ Q++ HPS LWCV L GDF TGCQDH R++TRAPERAA A+VV+AF+ V + Q +A+ GPS +EI+ LP WE+RHA G++E QVQVFQR GKAIAAQWSAASS W+E+GEV Sbjct: 194 KQIAALKDHEGPVRSLDVVPNLGFMSTSNDGTVRVWSTDGSALATMHHPPGREGQPAFVLSGCCLE--SGEYVTVDEAGVCIVWRDCQAVQTIQHPSSLWCVAPLSGGDFVTGCQDHHARIFTRAPERAAAADVVKAFEATVKETQ-EATAKGPSDMEISKLPHWEQRHALPGRAEQQVQVFQRDGKAIAAQWSAASSAWVEIGEV 396
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: A0A0W8CHF3_PHYNI (Phospholipase A-2-activating protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CHF3_PHYNI) HSP 1 Score: 183 bits (465), Expect = 2.180e-50 Identity = 101/204 (49.51%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSESA-QSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 K+L +H GP+R L L P +GF+S SNDG+ +L +LDG LA M HP AEG+P FVL CVL G VS E VW + Q++ HP GLWCV ALPNGDFATGC D VRV+T R P V +F+ V + + A GPS VEI ALP +E+R + G S+GQ+Q+F+R KA A QWS S WI++GEV Sbjct: 167 KTLTDHRGPIRQLALVPDLGFVSCSNDGSIKLRTLDGTVLASMEHPLNAEGKPGFVLGVCVLSNGF--LVSASEDCTARVWSPEGALIQTVEHPGGLWCVTALPNGDFATGCDDKVVRVFTHDAARVDP-NAVASFEAAVEEARI-AKTRGPSGVEIEALPDYEQRASVNGTSDGQIQMFRRGSKAWACQWSGPSRTWIDIGEV 366
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: A0A6A3FTY8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FTY8_9STRA) HSP 1 Score: 180 bits (457), Expect = 4.900e-50 Identity = 99/204 (48.53%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSESA-QSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 K+L +H GP+R L L P +GF+S SNDG+ +L +LDGA +A M HP AEG+P FVL VL G VS E VW + Q++ HP GLWCV ALPNGDFATGC D AVRV+T R P + V +F V + + A GPS VE+ ALP +++R G S+GQ+Q+F+R KA A QWS S WI++GEV Sbjct: 189 KTLADHQGPIRQLALVPDIGFVSCSNDGSIKLRTLDGAVVASMEHPLNAEGKPGFVLGVAVLSNGF--LVSASEDCTARVWSPVGALLQTVEHPGGLWCVTALPNGDFATGCDDKAVRVFTHDAARVDP-DAVASFQAAVEEARI-AKTRGPSGVEVEALPDYDQRAIVNGNSDGQIQMFRRGAKAWACQWSGPSRTWIDIGEV 388
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: A0A3F2RGZ7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGZ7_9STRA) HSP 1 Score: 180 bits (457), Expect = 3.450e-49 Identity = 96/204 (47.06%), Postives = 128/204 (62.75%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSES-AQSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 K++ +H GP+R L L P +GF+S SNDG+ +L +LDGA LA M HP EG+P FVL CVL +G VS E VW + Q++ HP GLWCV LPNGDFATGC D VRV+T R P + V +F + + + A GPS VEI +LP +++R + +G S+GQ+Q+F+R KA A QWS S WI++GEV Sbjct: 189 KTMTDHQGPIRQLALVPNIGFVSCSNDGSIKLRTLDGAVLASMEHPLNTEGKPGFVLGVCVL--SSGFLVSASEDCTARVWSPEGALVQTVEHPGGLWCVTGLPNGDFATGCDDKTVRVFTHDAARVDP-DAVASFQAALEEARI-AKTRGPSGVEIESLPDYDQRASVQGSSDGQIQMFRRGTKAWACQWSGPSRTWIDIGEV 388
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: H3GC46_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GC46_PHYRM) HSP 1 Score: 179 bits (455), Expect = 5.080e-49 Identity = 98/204 (48.04%), Postives = 127/204 (62.25%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSESA-QSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 K+L +H GP+R L L P +GF+S SNDG+ +L +LDG +A M HP AEG+P FVL CVL G G VS E VW Q++ HP GLWCV ALPNGDFATGC D +RV+T R P + V +F V + + A GPS VEI +LP +++R + G S+GQ+Q+F+R KA A QWS S WI++GEV Sbjct: 156 KTLADHQGPIRQLALMPDIGFVSCSNDGSIKLRTLDGTVVASMEHPLNAEGKPGFVLGVCVL--GNGFVVSASEDCTARVWSPEGVLIQTVEHPGGLWCVAALPNGDFATGCDDKVMRVFTHDAARVDP-DAVASFQAAVEEARI-AKQRGPSGVEIESLPDYDQRASVNGNSDGQIQMFRRGTKAWACQWSGPSRTWIDIGEV 355
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: A0A662XME6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XME6_9STRA) HSP 1 Score: 180 bits (456), Expect = 5.390e-49 Identity = 98/204 (48.04%), Postives = 128/204 (62.75%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGS-ESAQSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 ++L +H GP+R L L P +GF+S SNDG+ +L +LDG LA M HP AEG+P FVL CVL +G VS E VW + Q++ HP GLWCV ALPNGDFATGC + VRV+T R P E V +F + V + Q A GPS VEI +LP +++R G S+GQ+Q+F+R KA A QWS S W+++GEV Sbjct: 207 QTLVDHQGPIRQLALVPDLGFVSCSNDGSIKLRTLDGVVLASMEHPLNAEGKPGFVLGVCVL--SSGLLVSASEDCTARVWSPQGQLLQTVEHPGGLWCVAALPNGDFATGCDNKIVRVFTGDAARVDP-EAVASFQRAVEEAQI-AKQRGPSGVEIESLPDYDQRAGLSGNSDGQIQMFRRGSKAWACQWSGPSKTWVDIGEV 406
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: A0A421GAV3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GAV3_9STRA) HSP 1 Score: 180 bits (457), Expect = 9.650e-49 Identity = 96/204 (47.06%), Postives = 128/204 (62.75%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSES-AQSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 K++ +H GP+R L L P +GF+S SNDG+ +L +LDGA LA M HP EG+P FVL CVL +G VS E VW + Q++ HP GLWCV LPNGDFATGC D VRV+T R P + V +F + + + A GPS VEI +LP +++R + +G S+GQ+Q+F+R KA A QWS S WI++GEV Sbjct: 852 KTMTDHQGPIRQLALVPNIGFVSCSNDGSIKLRTLDGAVLASMEHPLNTEGKPGFVLGVCVL--SSGFLVSASEDCTARVWSPEGALVQTVEHPGGLWCVTGLPNGDFATGCDDKTVRVFTHDAARVDP-DAVASFQAALEEARI-AKTRGPSGVEIESLPDYDQRASVQGSSDGQIQMFRRGTKAWACQWSGPSRTWIDIGEV 1051
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: D0NSL9_PHYIT (Phospholipase A-2-activating protein, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0NSL9_PHYIT) HSP 1 Score: 179 bits (453), Expect = 1.270e-48 Identity = 100/205 (48.78%), Postives = 124/205 (60.49%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSESA--QSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 K+L +H GP+R L L P +GF+S SNDG+ +L +LDG LA M HP EG+P FVL CVL G VS E VW E A Q++ HP GLWCV AL NGDFATGC D VRV+T R P+ V A + +D A GPS VEI ALP ++ R + G S+GQ+Q+F+R KA A QWS S WI++GEV Sbjct: 189 KTLTDHQGPIRQLALVPDIGFVSCSNDGSIKLRALDGTVLASMEHPLNTEGKPGFVLGVCVLSNGF--LVSASEDCTARVWS-QEGALVQTVEHPGGLWCVTALGNGDFATGCDDKVVRVFTHDAARMDPSAV--ASFQAAVDDARIAKTRGPSGVEIDALPDYDHRASVNGSSDGQIQMFRRGAKAWACQWSEPSRTWIDIGEV 388
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Match: A0A8J5M9V2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M9V2_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.660e-48 Identity = 99/204 (48.53%), Postives = 125/204 (61.27%), Query Frame = 1 Query: 10 KSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPTAEGQPPFVLQGCVLVGGAGESVSVDESGGCVVWRGSESA-QSLPHPSGLWCVCALPNGDFATGCQDHAVRVWTRAPERAAPAEVVQAFDKGVIDGQTKASVCGPSAVEIAALPKWEERHATRGKSEGQVQVFQRAGKAIAAQWSAASSIWIEVGEV 618 K+L +H GP+R L L P +GF+S SNDG+ +L +LDG LA M HP AEG+P FVL CVL G VS E VW + Q++ HP GLWCV ALPNGDFATGC D VRV+T R + V +F V + A GPS VEI ALP +++R + G S+GQ+Q+F+R KA A QWS S WI++GEV Sbjct: 474 KTLADHQGPIRQLALVPDIGFVSCSNDGSIKLRTLDGTVLASMEHPLNAEGKPGFVLGVCVLSNGF--LVSASEDCTARVWSPEGALIQTVEHPGGLWCVAALPNGDFATGCDDKIVRVFTHDAARV-DSNAVASFQAAVEEAGI-AKTRGPSGVEIEALPDYDQRASVTGTSDGQIQMFRRGSKAWACQWSGPSRTWIDIGEV 673 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103237.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103237.270.1 >prot_H-elongata_contig103237.270.1 ID=prot_H-elongata_contig103237.270.1|Name=mRNA_H-elongata_contig103237.270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp QQIKSLREHVGPVRSLDLAPGVGFMSTSNDGNARLWSLDGAPLAIMPHPPback to top mRNA from alignment at H-elongata_contig103237:377..2104- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103237.270.1 ID=mRNA_H-elongata_contig103237.270.1|Name=mRNA_H-elongata_contig103237.270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1728bp|location=Sequence derived from alignment at H-elongata_contig103237:377..2104- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103237:377..2104- >mRNA_H-elongata_contig103237.270.1 ID=mRNA_H-elongata_contig103237.270.1|Name=mRNA_H-elongata_contig103237.270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig103237:377..2104- (Himanthalia elongata Himel1 dioecious)back to top |