Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 603 |
| Cds size | 285 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929567.7081563-UTR-H-elongata_contig10318:2507..2824 | 1622929567.7081563-UTR-H-elongata_contig10318:2507..2824 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10318 2508..2824 + |
| 1691679073.6745536-UTR-H-elongata_contig10318:2507..2824 | 1691679073.6745536-UTR-H-elongata_contig10318:2507..2824 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10318 2508..2824 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929567.7216313-CDS-H-elongata_contig10318:2824..3087 | 1622929567.7216313-CDS-H-elongata_contig10318:2824..3087 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10318 2825..3087 + |
| 1691679073.6838393-CDS-H-elongata_contig10318:2824..3087 | 1691679073.6838393-CDS-H-elongata_contig10318:2824..3087 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10318 2825..3087 + |
| 1622929567.7349586-CDS-H-elongata_contig10318:4183..4205 | 1622929567.7349586-CDS-H-elongata_contig10318:4183..4205 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10318 4184..4205 + |
| 1691679073.693927-CDS-H-elongata_contig10318:4183..4205 | 1691679073.693927-CDS-H-elongata_contig10318:4183..4205 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10318 4184..4205 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10318.267.1 >prot_H-elongata_contig10318.267.1 ID=prot_H-elongata_contig10318.267.1|Name=mRNA_H-elongata_contig10318.267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MRTYSPWPRGETNTAELNLRPKEYVAWHLRIPTEADRNTGYDPNVHTYMI
LETPDVVCSSFLEVMEDARLHCPGLFTNDTQVYISSISTSLGNSC back to topmRNA from alignment at H-elongata_contig10318:2508..4205+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10318.267.1 ID=mRNA_H-elongata_contig10318.267.1|Name=mRNA_H-elongata_contig10318.267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1698bp|location=Sequence derived from alignment at H-elongata_contig10318:2508..4205+ (Himanthalia elongata Himel1 dioecious)
GCGGTATTGTAAGGCATCTCTAAATTACAACAAAGCTATCGTCCGGCTCC
CAATCGAACGTGCCAGACATATATGAAATCAAGACGTTCCGTTAATCAAG
CGATTTGATCCTTCCCAGGAGGTCCAACTCCTTAGTGCATCTTATTTTGA
ATCATGTGTCCAGGGGTCTAGTAGGCATTTGTAGATGAAGGTCTACGCTC
GAATCTTCGCTCTCTAGCTTGTAATCCATCACCATCACCTTCTGTCCTTT
TGCTTCTTAACATCACCTTAATCATTTTCCCTTTTTCCTCGTTCTTAGCC
CTTTGCTGAGAGATGCTATGAGGACCTACAGTCCATGGCCCAGGGGAGAG
ACCAACACAGCAGAGCTGAATCTTCGCCCCAAGGAGTACGTGGCGTGGCA
TTTGAGGATTCCAACAGAGGCTGACAGAAATACCGGTTATGATCCCAATG
TACACACCTACATGATTCTAGAGACACCTGATGTGGTCTGCTCGTCGTTT
CTTGAGGTTATGGAGGACGCGCGTCTACACTGCCCGGGACTCTTCACAAA
CGACACCCAAGTATATATTTCATCAATCAGGTGATCTCAGAGGCTTATGT
CGCTGTTATTTACTCCCTCTGCATCGATAACCTTACATATTTCGGACCAG
GCCTGTGCTCTTCAGCGGTGATTTTAAGACGAATGAAAGTTTTGCCCTCG
CGATACTGTCAAATACTGAAGATAACGCATAATTAATCGCGTACATCGAC
TTCAACGTCGACGGCAAGAAATTATCGTTGCGTTGAAGCCCGGGGCGTAT
ATTTTAAATATGATAATGAATCATAGGAATACACGCGTTGGGTAGTTTGA
ATCGATGCTTACTTGGATGTTGTTGTTTTTACCTTTTGACCACAGACTGG
GTTTTTGATATCAACTTATGTGAGAATTCTATAAAAAAAAACATGCTGCG
TGAACCCAGCCGATATTTTGGAAGTTAAAAATGCCAACCGACTCAGATAA
AACCACCAAACAAAGTGGTGAACCATCAAGCCCGGGTTGGTTCCACATGA
ATGATCATCCGACGAAAGTACGCCTTTTCACGTGCCTTGAGATTTGGTTG
AAGCTTTACCGCGGCAGGGAGACGTCGCAGTTGTCATTGACACAATTCTC
TTCCAGCATAAAGAAGATATTTATCCGCCAACACCTGGACCTCTCACAAT
ACATCTGCCGATAATTGCTAGTCGTTACTTGCCTAGCACAAAACAACGCG
GAGAGATACCGAATACCAAGCCCCTGCACGAGCTTCCCCAAAAATCAGGA
ATGAAAAAAATCCCTGACATAATTAAGCAATAGCTCCGAATACCCCGCTG
TGTTAACATATTAAGAGTCGTTTTCTTTCAAGTAAAGAACCTTCAGCTCG
GTATTTTAGACGGATTCGTTGCCGGTCGGTGCCCCTCTTGTCTGTGGTTA
TAATAATAAGATGTAACAAACGCGGAGGGGGACTAAACATAGCGTAAGAT
TCCCATTCATTTGTACGATCAAAGCATGTTTTGAGAAGGATACGCCACTG
TATGGAGTCATTGCTGTTTGCCTCTACATACCTTTTTCATGCCTTAAAAA
CCACCCAATAATAGTATCTTTCCTATCGCGTGGGGAAACCCTTTTGGCCC
ATCGTTTACGTTTTATTTTAATACAGCACGAGTCTGGGCAACAGCTGC back to topCoding sequence (CDS) from alignment at H-elongata_contig10318:2508..4205+ >mRNA_H-elongata_contig10318.267.1 ID=mRNA_H-elongata_contig10318.267.1|Name=mRNA_H-elongata_contig10318.267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig10318:2508..4205+ (Himanthalia elongata Himel1 dioecious)
ATGAGGACCTACAGTCCATGGCCCAGGGGAGAGACCAACACAGCAGAGCT
GAATCTTCGCCCCAAGGAGTACGTGGCGTGGCATTTGAGGATTCCAACAG
AGGCTGACAGAAATACCGGTTATGATCCCAATGTACACACCTACATGATT
CTAGAGACACCTGATGTGGTCTGCTCGTCGTTTCTTGAGGTTATGGAGGA
CGCGCGTCTACACTGCCCGGGACTCTTCACAAACGACACCCAAGTATATA
TTTCATCAATCAGATGAGGACCTACAGTCCATGGCCCAGGGGAGAGACCA
ACACAGCAGAGCTGAATCTTCGCCCCAAGGAGTACGTGGCGTGGCATTTG
AGGATTCCAACAGAGGCTGACAGAAATACCGGTTATGATCCCAATGTACA
CACCTACATGATTCTAGAGACACCTGATGTGGTCTGCTCGTCGTTTCTTG
AGGTTATGGAGGACGCGCGTCTACACTGCCCGGGACTCTTCACAAACGAC
ACCCAAGTATATATTTCATCAATCAGCACGAGTCTGGGCAACAGCTGCCA
CGAGTCTGGGCAACAGCTGC back to top
|