mRNA_H-elongata_contig103108.262.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: D8LTY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY0_ECTSI) HSP 1 Score: 237 bits (604), Expect = 5.370e-74 Identity = 134/225 (59.56%), Postives = 150/225 (66.67%), Query Frame = 1 Query: 133 LPGKLCLVSGGGAGFTAGMAGGSTVGSDEPAGFGLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDA--------------QQRPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMPEGPK 765 L GK V+GGGAG A G EPAGFG+ SAWGV+SV+FILMNA+KRLAPIA QPFSR GFQ+KFSPLVVKRALTLD ++R GPLRLLLAGPYSMGLFHA+KKR+TVSW LT GV+ LVQ+VKRLPYPWRSIVDAGVVVGLSYG LSICVIWARA++GK P +DPA+PE K Sbjct: 124 LMGKALFVTGGGAGAGA-------AGKGEPAGFGVASAWGVVSVVFILMNAVKRLAPIAMQPFSRAS------------------------------LGFQKKFSPLVVKRALTLDQAAAAVPAADGGQKRRRRAGPLRLLLAGPYSMGLFHATKKRKTVSWSLTAGVLCLVQMVKRLPYPWRSIVDAGVVVGLSYGTLSICVIWARAILGKAPSIDPALPEEKK 311
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A6H5KSH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH0_9PHAE) HSP 1 Score: 206 bits (525), Expect = 2.150e-64 Identity = 104/140 (74.29%), Postives = 113/140 (80.71%), Query Frame = 1 Query: 379 MYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQ--------------RPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMPE 756 MY FSA+MAYAEG KGFQQKFSPLVVKRALTLD R GPLRLLLAGPYSMGLFHA+KKR+TVSW LT GV+ LVQ+VKRLPYPWRSIVDAGVVVGLSYG LSICVIWARAV+G+ P +DPA+PE Sbjct: 1 MYAGFSAIMAYAEGFKGFQQKFSPLVVKRALTLDPAAXXXXXXXXXXXXXXRAGPLRLLLAGPYSMGLFHATKKRKTVSWSLTAGVLCLVQMVKRLPYPWRSIVDAGVVVGLSYGTLSICVIWARAVLGRAPSIDPALPE 140
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A836CIU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU2_9STRA) HSP 1 Score: 207 bits (527), Expect = 6.000e-63 Identity = 109/175 (62.29%), Postives = 128/175 (73.14%), Query Frame = 1 Query: 229 FGLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQRPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMP 753 FGL SAWGVLSVL IL NA+KRLAPIA QPF GD HW MYV F+ LMAYAEG K FQ+KFSP+VV+RALTLD + GPLRL+LAGPYSMGLFHAS+KR+ VSW L+ V+ LVQ V++LPYPWRSI+D GVV GLS+G+ +I W R+ G P VD +P Sbjct: 96 FGLASAWGVLSVLAILGNAVKRLAPIAMQPFK--------SGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLD--KSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLP 260
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A835ZF77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF77_9STRA) HSP 1 Score: 201 bits (511), Expect = 4.530e-61 Identity = 104/177 (58.76%), Postives = 127/177 (71.75%), Query Frame = 1 Query: 229 FGLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLD-AQQRPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMPE 756 FG SAWGVLSVL IL A++RL PIA QPF GD HW +Y++F ALMAY EG K FQ+KFSP+VV+RALTLD A+ GPLR++LAGPY MGLF+A++KR+ VSW L VI LV +V++LPYPWRSI+DAGVV GLS+GA +I W R+ G+ P VD MPE Sbjct: 47 FGFASAWGVLSVLSILAGALRRLVPIALQPFKA--------GDLSYGHWALYMSFVALMAYVEGHKAFQKKFSPMVVQRALTLDQARTSFGPLRIILAGPYCMGLFYATRKRKIVSWTLYISVIALVTVVRQLPYPWRSIIDAGVVAGLSWGASAILYFWVRSWFGRAPGVDAQMPE 215
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: W7TVP9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVP9_9STRA) HSP 1 Score: 189 bits (481), Expect = 9.350e-56 Identity = 108/205 (52.68%), Postives = 136/205 (66.34%), Query Frame = 1 Query: 142 KLCLVSGGGAGFTAGMAGGSTVGSDEPAGFGLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQRPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMPE 756 KL ++GG A V + + F L + WGV+ V+ +L NAI+RL PIA +PF + + F +HW YV F+ +MAYAEG KGFQ KFSPLVVKRALTL R L +LA PYSMGLFHASKKR+ VSW + GVI LV+ VK L +P+RSIVDAGVV GLS+GALSI I+A+A+ G VP +DPA+P+ Sbjct: 96 KLAKITGGAA---------PAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTA----TPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGP--RSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPD 285
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A7S2WJT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJT5_9STRA) HSP 1 Score: 185 bits (469), Expect = 9.260e-54 Identity = 105/203 (51.72%), Postives = 127/203 (62.56%), Query Frame = 1 Query: 181 AGMAGGSTVGSDE--PAGFGLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQRPGP---LRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVM-GKVPLVDPAMP-EGPKG 768 A ++GG + DE P GF + S WG L V++IL N IKRL P+A QPF+ S GD +HWV Y + M Y EG K FQ KF PLVV RA TL+ Q GP LR LA YSMGLFHASKKR VSW G+ +V VKRLPYPWRSI+D GVV GLS+GA SI ++ R + G++P VDP +P + PKG Sbjct: 106 AAISGGGKLSKDEQSPLGF-IASTWGALGVMYILANPIKRLLPVALQPFA-------SPGDLSAMHWVAYALWCVFMGYTEGYKAFQLKFCPLVVSRAATLERQDCRGPGWWLRAALAPLYSMGLFHASKKRLIVSWSFVIGISAIVATVKRLPYPWRSIIDGGVVFGLSWGAASIAYLYLRKIFTGQIPEVDPQLPVKEPKG 300
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A7S3SW48_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SW48_EMIHU) HSP 1 Score: 177 bits (449), Expect = 1.530e-51 Identity = 99/179 (55.31%), Postives = 117/179 (65.36%), Query Frame = 1 Query: 232 GLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQRPGPL-RLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMPEGPK 765 GLR+AWGV L IL AI RLAPIA QP Q D + W +Y A AY EG K FQ KFSPLVV+RA+TL + P PL +LA YSMGLFHASKKR+TVSW ++ GV ++ LVKRLPYPWRS+VDAGV GL +G SI VI+ RA+ GK P VDP +P+ K Sbjct: 72 GLRTAWGVCGFLGILAQAIGRLAPIAMQPIL--------QRDITMLQWGLYGGTMAFFAYTEGYKAFQCKFSPLVVQRAMTLSTRSPPPPLLHSVLAPFYSMGLFHASKKRKTVSWSISLGVACIIGLVKRLPYPWRSVVDAGVCTGLLWGGTSIGVIYLRALAGKSPGVDPELPKEDK 242
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A0M0JX49_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX49_9EUKA) HSP 1 Score: 170 bits (430), Expect = 5.900e-49 Identity = 92/175 (52.57%), Postives = 116/175 (66.29%), Query Frame = 1 Query: 232 GLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQRPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMPE 756 G+ AWGV L IL +AIKRLAPIA QPF Q D + W Y + AY EG FQ+KFSPLVV+RA+TL +Q P+ + LA YSMGL HA+KKR+ VSW ++ V ++V +VKRLPYPWRSIVDAGV GL++GA+SI +I+ARA+ G P VDP +P Sbjct: 55 GIAVAWGVCGFLGILASAIKRLAPIAMQPFL--------QRDLSWLQWGFYGGSMGIFAYVEGYGAFQKKFSPLVVERAMTL--KQSTSPVHIALAPFYSMGLMHATKKRKIVSWSVSMSVAMVVGIVKRLPYPWRSIVDAGVCTGLAWGAVSIVIIYARALAGTPPGVDPCLPS 219
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A836CMT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT5_9STRA) HSP 1 Score: 169 bits (429), Expect = 2.820e-48 Identity = 92/209 (44.02%), Postives = 129/209 (61.72%), Query Frame = 1 Query: 130 CLPGKLCLVSGGGAGFTAGMAGGSTVGSDEPAGFGLRSAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQRPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMPE 756 C+ K+ L+SGGGA T + + G S+WGVLSVL I NA +RL P+A +P +G TV WV Y +AL+ Y +G + ++KFS VV+RALTLD Q PLR+LLAGPYSMGLF A+++R+ SWG+ + +++++K++PYPWRSIVDAGV+ GL +G ++ W R+ G P VDP MP+ Sbjct: 59 CIFNKIALLSGGGAASV------DTPMNSKAVKIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMS-----DKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLD-QGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPK 255
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Match: A0A8J6CDI7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDI7_DIALT) HSP 1 Score: 163 bits (413), Expect = 1.930e-46 Identity = 90/172 (52.33%), Postives = 111/172 (64.53%), Query Frame = 1 Query: 241 SAWGVLSVLFILMNAIKRLAPIAFQPFSRKKHFFFSQGDFKTVHWVMYVTFSALMAYAEGLKGFQQKFSPLVVKRALTLDAQQ-RPGPLRLLLAGPYSMGLFHASKKRRTVSWGLTTGVILLVQLVKRLPYPWRSIVDAGVVVGLSYGALSICVIWARAVMGKVPLVDPAMP 753 S WGV+ V+ IL NAI RLAPIA +PF G +HW Y A AY EG K FQ KFSPLVV RA TL Q R LR +LA YSMGLFHA++KR+ +SW ++ VI++V +VKRLPYPWRSIVDAGVV GL++G SI I+ +A+ G +P V +P Sbjct: 53 SHWGVVGVMAILANAIGRLAPIAAEPFR--------YGGLAPLHWASYAATIAAFAYVEGYKAFQLKFSPLVVSRAFTLGPQGGRATALRSVLAPFYSMGLFHATRKRKVISWTISLAVIVIVGVVKRLPYPWRSIVDAGVVAGLTWGVTSIGWIYVKAIGGSLPNVSTELP 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103108.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103108.262.1 >prot_H-elongata_contig103108.262.1 ID=prot_H-elongata_contig103108.262.1|Name=mRNA_H-elongata_contig103108.262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp VRLGRCTQRSTCSSRPVASAFGALELQSATTLGGGVTTGSSSPCLPGKLCback to top mRNA from alignment at H-elongata_contig103108:548..1969- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103108.262.1 ID=mRNA_H-elongata_contig103108.262.1|Name=mRNA_H-elongata_contig103108.262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1422bp|location=Sequence derived from alignment at H-elongata_contig103108:548..1969- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103108:548..1969- >mRNA_H-elongata_contig103108.262.1 ID=mRNA_H-elongata_contig103108.262.1|Name=mRNA_H-elongata_contig103108.262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig103108:548..1969- (Himanthalia elongata Himel1 dioecious)back to top |