mRNA_H-elongata_contig103072.258.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: D7G036_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G036_ECTSI) HSP 1 Score: 146 bits (369), Expect = 4.970e-44 Identity = 60/92 (65.22%), Postives = 78/92 (84.78%), Query Frame = 1 Query: 1 MQEKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
MQ+KLTAPP+FDGPVRDRKCTD+ F L +I++W+ MT+VGI+S+Q+GDV +L+APTDYEGNLCG+D GYED YY N GSG+C ++CP+
Sbjct: 1 MQDKLTAPPEFDGPVRDRKCTDIIFTLAIIIMWITMTVVGISSVQQGDVRELLAPTDYEGNLCGFDDGYEDRGKLYYANNVGSGVCEKSCPS 92
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE) HSP 1 Score: 145 bits (366), Expect = 6.660e-39 Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 1 Query: 1 MQEKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
MQ+KLTA P+FDGPVR+RKCTD+ F L +I++W+ MT VGI+SIQ+GDV +L+APTDYEGNLCG+D GYEDL YY N GSG+C+ TCP+
Sbjct: 4 MQDKLTASPEFDGPVRERKCTDIIFMLAIIIMWITMTAVGISSIQQGDVRELLAPTDYEGNLCGFDDGYEDLGKLYYANNVGSGVCVGTCPS 95
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S4J5U8_9STRA (Choline transporter-like protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5U8_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.780e-25 Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSG---YEDLPFFYYVNYEGSGICIETCPT 276
EKL APPDF GPV++R+CTDV +LLL++ W AMT +G ++ GD ++ P DY+GN+CG + G ED PF YYVN +G+C++ CP+
Sbjct: 9 EKLQAPPDFSGPVQNRRCTDVLCSLLLVLTWAAMTGLGFYAVSNGDYRVIVYPMDYDGNICGTNYGNIDMEDYPFLYYVNSYSAGVCVKECPS 101
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S4R109_9STRA (Choline transporter-like protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R109_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.950e-23 Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1 Query: 10 KLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSG---YEDLPFFYYVNYEGSGICIETCPT 276
KL AP DFDGP ++R+CTDVF +LLL++ W+AMT +G ++ GD ++ P DY+GN+CG D G D +FY++N G+C++ CP+
Sbjct: 13 KLIAPADFDGPTKNRRCTDVFCSLLLVIAWIAMTGIGAYAVTNGDYRFVLFPIDYDGNICGTDFGDVDMTDFEYFYFINIFTGGVCVKECPS 104
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S3Y2F1_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2F1_HETAK) HSP 1 Score: 101 bits (252), Expect = 3.960e-23 Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1 Query: 7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCP 273
E + A DFDGPV++R+CTD+ + LL+V+W+ MT++G ++ GD+ ++ P DY+G CG YED P YYV ++G+G+C+E+CP
Sbjct: 10 EPIQAGHDFDGPVKNRRCTDLLWLGLLLVVWICMTVIGKQAVDNGDIDLILHPVDYQGRSCGVGD-YEDKPDLYYVRFDGTGVCVESCP 97
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: B7FYN0_PHATC (Choline transporter-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN0_PHATC) HSP 1 Score: 101 bits (252), Expect = 4.010e-23 Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1 Query: 7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYE--DLPFFYYVNYEGSGICIETCP 273
+KL AP DFDGP +DR CTD+ L LI +WVAMT VGI ++ GD ++ P DY+GN+CG D G + + P+ YVN G+C++ CP
Sbjct: 8 DKLVAPADFDGPTKDRHCTDILMLLALIAMWVAMTGVGIYAVTNGDYRLVLYPLDYDGNVCGTDFGLDMTEFPYLLYVNSYTGGVCVKECP 98
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A7S2HA85_9STRA (Choline transporter-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HA85_9STRA) HSP 1 Score: 101 bits (252), Expect = 4.040e-23 Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1 Query: 7 EKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSG---YEDLPFFYYVNYEGSGICIETCP 273
EKL AP DFDGP +DR CTD+F ++LL+ +W+AMT +G + GD ++ P DY+GN+CG D G D P+ YVN G+C++ CP
Sbjct: 18 EKLVAPADFDGPTKDRHCTDIFCSILLLCMWIAMTGLGAYAATNGDFRVILYPLDYDGNICGTDYGSIDMNDYPYLVYVNIFSGGVCVKECP 109
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A6V1T854_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T854_HETAK) HSP 1 Score: 99.8 bits (247), Expect = 1.840e-22 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1 Query: 31 FDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCP 273
F P ++RKCTD FALLLI W AMT +G S+Q+GD+T Y+G++CG DSG EDLP+ YYV + +G+C+E+CP
Sbjct: 14 FMSPEKNRKCTDFLFALLLIASWAAMTYLGYQSMQDGDITVFTTGMQYDGSVCGVDSGVEDLPYLYYVRTDLTGVCVESCP 94
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 2.300e-21 Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 10 KLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
KL AP D +G DR+CTDV F L+LI+ W+AMT +G+ I G+ L+ DY+G +CG D G +D YY+ ++G+G+C+E CPT
Sbjct: 17 KLAAPDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPT 104
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.100e-20 Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1 Query: 16 TAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTKLIAPTDYEGNLCGYDSGYEDLPFFYYVNYEGSGICIETCPT 276
TAP D +G DR+CTDV F L+LI+ W+AMT +G+ I G+ L+ DY+G +CG D G +D YY+ ++G+G+C+E CPT
Sbjct: 3 TAPDDIEGGA-DRRCTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFDGTGVCVEECPT 88 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103072.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103072.258.1 >prot_H-elongata_contig103072.258.1 ID=prot_H-elongata_contig103072.258.1|Name=mRNA_H-elongata_contig103072.258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp MQEKLTAPPDFDGPVRDRKCTDVFFALLLIVLWVAMTIVGITSIQEGDVTback to top mRNA from alignment at H-elongata_contig103072:1093..2222+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103072.258.1 ID=mRNA_H-elongata_contig103072.258.1|Name=mRNA_H-elongata_contig103072.258.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-elongata_contig103072:1093..2222+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103072:1093..2222+ >mRNA_H-elongata_contig103072.258.1 ID=mRNA_H-elongata_contig103072.258.1|Name=mRNA_H-elongata_contig103072.258.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig103072:1093..2222+ (Himanthalia elongata Himel1 dioecious)back to top |