mRNA_H-elongata_contig10298.253.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: D7G6S4_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S4_ECTSI) HSP 1 Score: 452 bits (1163), Expect = 1.850e-149 Identity = 220/344 (63.95%), Postives = 256/344 (74.42%), Query Frame = 3 Query: 45 MGARRRQNNAGSKDSLKLDAKRHRQSSQIIRKARKGSAMRCCTPWQLVIACAVLLASFAI-WRRTVGRNKGVPVLSHDRAVCEDGCEWPVECAHAHYAPHVPGCHPISCGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEPVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFD 1073
MG RRR + + ++ +R+ SQ +A + W + A +L+ S A+ + + VPVL HD A C DGC W +ECAH+HY P V GCHP +CGRFA+H FLD+PSV+RLIA+AE+GM CG DVRSG G GGGPCIMDVNSGFVR SGG +RNIYE +G +YS DDY+FY +TIE IRAKVQ +F L FL FTAPTFITRIQGR GW P S HDEYWHVHVDKNNTPHYDYSGLLYLSE+ VDFEGGLFSFQ+ +SPPEMIIEPAPGLLLAFTAGMENPHR H+VTAGTR+VLSFWFTCD+RKEFS+FLDGK+H FD
Sbjct: 1 MGTRRRSTAPRGRSNSSAQSQLNRRQSQWNVQAESKPTL---ARWAWISAGCLLILSVALRLANSNAKTAAVPVLKHDEAACADGCWWDIECAHSHYRPRVEGCHPTACGRFAKHGFLDKPSVRRLIAMAERGMAGCGADVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGEDDGLERQPLYSADDYQFYGETIERIRAKVQDLFGLGFLMFTAPTFITRIQGREGWQPESAHDEYWHVHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDQRKEFSSFLDGKMHRRFD 341
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: A0A6H5J6I4_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6I4_9PHAE) HSP 1 Score: 433 bits (1113), Expect = 1.060e-141 Identity = 214/333 (64.26%), Postives = 246/333 (73.87%), Query Frame = 3 Query: 45 MGARRRQNNA-GSKDSLKLDAKRHRQSSQIIRKARKGSAMRCCTPWQLVIACAVLLASFAIWRRTVGRNKGV-PVLSHDRAVCEDGCEWPVECAHAHYAPHVPGCHPISCGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEPVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFS 1037
MG RRR G ++S RQS ++ +K + R W + A +L+ ++ T V PVL HD A C DGC W VECAH+HY P V GCHP +CGRFA+H FLD+PSV+RLIA+AE+GM CG+DVRSG G GGGPCIMDVNSGFVR SGG +RNIYE G +YS DDY+FY +TIE IRAKVQ +F L FLKFTAPTFITRIQGR GW P S HDEYWH+HVDKNNTPHYDYSGLLYLSE+ VDFEGGLFSFQ+ ++SPPEMIIEPAPGLLLAFTAGMENPHR H+VT GTR+VLSFWFTCD+RKEFS
Sbjct: 38 MGTRRRSTAPRGRRNSSAQSQLNRRQSQWSVQAEKKPTLAR----WAWISAGCLLILGVSLRLATSNAKTAVVPVLKHDEAACADGCWWDVECAHSHYRPKVEGCHPTACGRFAKHGFLDKPSVRRLIAMAERGMAGCGDDVRSGRSGAGGGPCIMDVNSGFVRASGGDIRNIYEGEEDNGLERQPLYSADDYKFYGETIERIRAKVQDLFGLGFLKFTAPTFITRIQGREGWQPKSAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETNESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTTGTRFVLSFWFTCDKRKEFS 366
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: A0A836CCH1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH1_9STRA) HSP 1 Score: 270 bits (690), Expect = 1.010e-79 Identity = 144/265 (54.34%), Postives = 173/265 (65.28%), Query Frame = 3 Query: 294 GCEWPVECAHAHYAPHVPGCHPI-----SCGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEPVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFD 1073
GC + V CA HY P +PGCHP SC R A F + V LI +AE+GM RS + GGP I+D+N GF+R G + NIY+ G +L YS D+YRFY D +E IRA VQ F LDFL FTAPTFITR+ G + W P S HDEYWH+HVDK +T HYDYSGLLYLSE VDFEGGLF + SPP M+++P PGL+L+F+AG EN H+V VT GTRY LSFWFTC+ + F TFLDGK HD F+
Sbjct: 81 GCRFNVTCASDHYTPFIPGCHPRPDVPGSCARIAMSEFASKDEVALLIDMAERGMAG-----RSKA----GGPTILDINGGFLRDPQGVV-NIYK-----GRESL--YSVDEYRFYGDIVERIRAFVQASFELDFLYFTAPTFITRLVGNSQWKPKSMHDEYWHMHVDKESTDHYDYSGLLYLSEQGVDFEGGLFRME----SPP-MVVKPTPGLVLSFSAGRENKHQVALVTEGTRYCLSFWFTCNASRRFKTFLDGKAHDRFE 323
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: A0A6G0WTF8_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTF8_9STRA) HSP 1 Score: 234 bits (598), Expect = 7.180e-67 Identity = 130/296 (43.92%), Postives = 171/296 (57.77%), Query Frame = 3 Query: 198 AVLLASFAIWRRTVGRNKGVPV--LSHDRAVCEDGCEWPVECAHAHYAPHVPGCHPIS-CGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEPVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFDR 1076
A+L A+W R V VP + +++ W V C++ Y P + GCH S CGR + F+ + V++L +A+ GM RS GGP IMD+N+G+V+ G + N+Y ++ + Y YRD IE IR V + F L L FTAPTF+TR+ G W P HDEYWH HVDKNNT HYDYSGLLYL++ VDF GGLF+F D ++ +EPA G L+ FT+GMEN H V +V G RY++S WFTCD RK F FLDGKVHD F++
Sbjct: 32 ALLFGLLAVWLR-VQTTAAVPSSHVGRSQSLAPARIRWNVTCSNQ-YNPFIQGCHKRSKCGRALRDNFVSQDVVQQLRDIADHGMQG-----RSTL----GGPTIMDINTGYVK-DGNGLINLYR------QNPPVKFTTEQYTLYRDVIEKIRRAVMEEFQLSSLHFTAPTFLTRLIGNESWTPAELHDEYWHAHVDKNNTAHYDYSGLLYLADYGVDFTGGLFAFIDAKNT----TVEPARGRLMMFTSGMENLHEVRRVETGARYLMSMWFTCDPRKRFHNFLDGKVHDRFNQ 305
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: A0A485KJ32_9STRA (Aste57867_7956 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJ32_9STRA) HSP 1 Score: 234 bits (597), Expect = 1.200e-66 Identity = 138/326 (42.33%), Postives = 176/326 (53.99%), Query Frame = 3 Query: 120 SSQIIRKARKGSAMRCCTP--WQLVIACAVLLASFAIWRRTVGRNK--GVPVLSHDRAVCEDGCEWPVECAHAHYAPHVPGCHP-ISCGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEPVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFDRIE 1082
S+ + KA K S TP W L +A AVL A + + N G P S + W V C++ +Y P + GCH CGR + F+ + L +A+ GM RS GGP IMD+N+G+V+ G + N+Y ++ + Y YRD IE IR + F L L FTAPTF+TR+ G W P HDEYWH HVDKNNT HYDYSGLLYL++ +F GGLF+F D +EPA L++ FT+GMEN H+V QV G RY++S WFTCD RK F FLDGKVHDHFD E
Sbjct: 16 SAAVSPKASKSSKW---TPLFWLLALAFAVLAAGLRYYTTSASLNSHVGQPTSSAPARI-----RWNVTCSNQYY-PFIKGCHKRAKCGRAVRDNFVTPDVIDALREIADHGMQG-----RSTL----GGPTIMDINTGYVK-DGNGLINLYRQTP------PVEFTTEQYTLYRDVIEKIRQTIMAEFDLSSLHFTAPTFLTRLIGNASWTPAELHDEYWHAHVDKNNTHHYDYSGLLYLADYGTEFTGGLFAFMD---GAKTTTVEPARRLMM-FTSGMENLHQVRQVETGARYLMSMWFTCDPRKRFHNFLDGKVHDHFDSTE 312
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: W4FWV1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWV1_9STRA) HSP 1 Score: 229 bits (583), Expect = 1.440e-64 Identity = 130/306 (42.48%), Postives = 168/306 (54.90%), Query Frame = 3 Query: 177 WQLVIACAVLLASFAIWRRTVGRNK---GVPVLSHDRAVCEDGCEWPVECAHAHYAPHVPGCHP-ISCGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYE---PVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFD 1073
W L + +L A R+ +++ G+P + + W V C+ Y P V GCH CGR + F+ V L +A+ GM RS GGP IMD+N+G+V+ G + N+Y PV ++ + Y YRD IE IR + F L L FTAPTF+TR+ G W P HDEYWH HVDKNNT HYDYSGLLYL++ V+F GGLF+F D D + + +EPA G L+ FT+GMEN H V QV G RY++S WFTCD RK F FLDGK HD +D
Sbjct: 40 WGLAVVFGLLAAWLRFQTRSTQQHQHHVGMPTSTAPARI-----RWNVTCSKQ-YQPFVQGCHKRAKCGRALRDNFVSPAVVDALRDIADHGMQG-----RSTL----GGPTIMDINTGYVK-DGNGLINLYRQDPPVQ---------FTTEQYTLYRDVIESIRLAIMDEFRLATLYFTAPTFLTRLIGNASWVPQEMHDEYWHAHVDKNNTRHYDYSGLLYLADYGVEFTGGLFAFLDKDKN---ITVEPAQGRLMMFTSGMENLHEVRQVETGARYLMSMWFTCDSRKRFHNFLDGKTHDQYD 317
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: A0A5D6XKR6_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKR6_9STRA) HSP 1 Score: 229 bits (583), Expect = 2.010e-64 Identity = 122/249 (49.00%), Postives = 155/249 (62.25%), Query Frame = 3 Query: 342 VPGCHPI--SCGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEPVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFDRIE 1082
V GCH + +CGR + F+ V +L +AE GM RS GGP IMDVN+GFV+ G + NIY+ S + ++ + + YR IE IR + + F L+FL FTAPTFITR+ G W PT HDEYWH HVDK+NT HYDYSGL+YLS+ V+F GGLF+F D E ++EPA G L+ FTAG EN H+V QV G R+V+S WF+CD RK+F FLDGK+H HF R E
Sbjct: 98 VEGCHKVGAACGRAVRDGFVTPEEVAQLREIAEIGMAN-----RSRL----GGPTIMDVNTGFVK-DGDGLVNIYQKD--RSSPPVPRFTAEQFALYRSVIERIRLALVEEFQLEFLYFTAPTFITRLVGNASWSPTEIHDEYWHPHVDKDNTQHYDYSGLVYLSDYGVEFTGGLFAFLDKG---REQVVEPARGRLMMFTAGKENLHQVRQVATGERFVMSMWFSCDARKQFRNFLDGKMHQHFKRDE 331
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: G4Z7H3_PHYSP (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z7H3_PHYSP) HSP 1 Score: 227 bits (578), Expect = 1.220e-63 Identity = 126/251 (50.20%), Postives = 152/251 (60.56%), Query Frame = 3 Query: 342 VPGCHPIS---CGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEP---VAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFDR 1076
VPGCH + CGR F+ V +L +AE GM RS GGP IMD+N+GFVR S G + NIY+P V E + +++ + YR +E IR V + F LD L F+APTFITR+ G W P HDEYWH HVDK NT HYDYSGLLYL++ DF GGLFSF D+ E ++EPA G L+ FTAG EN H V +V GTRYVLS WF+CD RKEF FLD K+H HF R
Sbjct: 99 VPGCHQENETLCGRAVIDNFVTPKQVTQLREIAEAGMKG-----RSKL----GGPTIMDINTGFVRDSEGLV-NIYQPESKVPDENKPGVKRFTKKQFDLYRGVVEKIRLAVMKEFDLDVLYFSAPTFITRLIGNESWTPAELHDEYWHPHVDKENTRHYDYSGLLYLADYGEDFTGGLFSFIDNS---TETVVEPARGRLIMFTAGSENLHVVRKVETGTRYVLSLWFSCDERKEFLNFLDEKMHKHFRR 336
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: A0A8K1C6P7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6P7_PYTOL) HSP 1 Score: 226 bits (576), Expect = 1.510e-63 Identity = 123/251 (49.00%), Postives = 155/251 (61.75%), Query Frame = 3 Query: 342 VPGCHPIS--CGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYE--PVAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFDRIE 1082
+PGCH + CGR + F+ V +L +AE GM RS GGP IMD+N+GFV+ G + NIY+ P A R ++ + + YR TIE IR + + F L+ L FTAPTFITRI G W PT HDEYWH HVDK+NT HYDYSGLLYLS+ +DF GGLF+F D E ++EPA G L+ FT+ EN H+V +V GTRYV+S WFTCD R+ F FLDGK+H HF R +
Sbjct: 88 IPGCHKVGKQCGRALRDQFVTPEEVVQLREIAEVGMAN-----RSCL----GGPTIMDINTGFVK-DGDGLVNIYQSHPKAAPIPR----FTAEQFDLYRRTIEKIRLALIEEFQLEHLYFTAPTFITRIVGNASWEPTEIHDEYWHPHVDKDNTRHYDYSGLLYLSDYGLDFTGGLFAFID---KKSEQVVEPARGRLMMFTSSKENLHQVRRVETGTRYVMSMWFTCDERRRFKNFLDGKMHVHFKRTD 321
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Match: H3GC84_PHYRM (P4Hc domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GC84_PHYRM) HSP 1 Score: 226 bits (576), Expect = 2.210e-63 Identity = 122/251 (48.61%), Postives = 153/251 (60.96%), Query Frame = 3 Query: 342 VPGCHPIS---CGRFAQHTFLDRPSVKRLIALAEQGMVACGEDVRSGSVGFGGGPCIMDVNSGFVRGSGGSMRNIYEP---VAGEGSRALAVYSEDDYRFYRDTIELIRAKVQQVFALDFLKFTAPTFITRIQGRTGWFPTSPHDEYWHVHVDKNNTPHYDYSGLLYLSESTVDFEGGLFSFQDDDDSPPEMIIEPAPGLLLAFTAGMENPHRVHQVTAGTRYVLSFWFTCDRRKEFSTFLDGKVHDHFDR 1076
VPGCH + CGR F+ V +L+ +AE GM RS GGP IMD+N+GFVR S G + NIY+P + E + +++ + YR +E IR + + F L+ L F+APTFITR+ G W P HDEYWH HVDK NT HYDYSGLLYL++ DF GGLFSF D+ E ++EPA G L+ FTAG EN H V +V GTRYVLS WF+CD RK F FLDG++H HF R
Sbjct: 97 VPGCHQENETRCGRALIDDFVTPEQVTQLLKIAEIGM-----QNRSQL----GGPTIMDINTGFVRDSEGLV-NIYQPERKIPNENKPGVKRFTKKQFNLYRGVVEKIRMALMKEFELEELYFSAPTFITRLMGNESWTPAEIHDEYWHPHVDKENTKHYDYSGLLYLADFGEDFTGGLFSFIDEH---TETVVEPARGRLMMFTAGSENLHVVRKVETGTRYVLSLWFSCDERKHFHNFLDGEMHKHFRR 334 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10298.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10298.253.1 >prot_H-elongata_contig10298.253.1 ID=prot_H-elongata_contig10298.253.1|Name=mRNA_H-elongata_contig10298.253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp MGARRRQNNAGSKDSLKLDAKRHRQSSQIIRKARKGSAMRCCTPWQLVIAback to top mRNA from alignment at H-elongata_contig10298:443..6165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10298.253.1 ID=mRNA_H-elongata_contig10298.253.1|Name=mRNA_H-elongata_contig10298.253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5723bp|location=Sequence derived from alignment at H-elongata_contig10298:443..6165+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10298:443..6165+ >mRNA_H-elongata_contig10298.253.1 ID=mRNA_H-elongata_contig10298.253.1|Name=mRNA_H-elongata_contig10298.253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at H-elongata_contig10298:443..6165+ (Himanthalia elongata Himel1 dioecious)back to top |