mRNA_H-elongata_contig102882.250.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: D8LD96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD96_ECTSI) HSP 1 Score: 220 bits (561), Expect = 1.370e-67 Identity = 120/166 (72.29%), Postives = 130/166 (78.31%), Query Frame = 1 Query: 52 RETVQLLTTPGPTRVTIVGRREKENASEGVPGK---RGIGGGGNGR-RFAVLTVHAAGHNHRTCFGALERELEKDEELG--GVVFYHVDVPGHEEERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAGER 531 RETV +LTTPGPTRVTIVG R + G K G GGG GR R AVLT+HAAGHNHRTC G LERE KDEELG GVVFYHVD PGHEEE++ DV+AK LSLEA AAQLL+VTIQLGLEWFVGLG GAGANVLLR+ACDNP +VAGLILAN S + AG R Sbjct: 171 RETVSVLTTPGPTRVTIVGDRGGGRSHGGTSAKVGGAGEGGGSGGRKRLAVLTLHAAGHNHRTCLGGLEREAAKDEELGAGGVVFYHVDTPGHEEEQAKDVEAKALSLEAQAAQLLEVTIQLGLEWFVGLGVGAGANVLLRFACDNPGKVAGLILANASGEAAGRR 336
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A6H5JJV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV4_9PHAE) HSP 1 Score: 217 bits (552), Expect = 5.810e-66 Identity = 117/166 (70.48%), Postives = 130/166 (78.31%), Query Frame = 1 Query: 52 RETVQLLTTPGPTRVTIVGRREKENASEG----VPGKRGIGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELG--GVVFYHVDVPGHEEERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAGER 531 RETV +LTTPGPTRVTIVG R + G V G R G G +R AVLT+HAAGHNHRTC G LERE+ KDEELG GVVF+HVD PGHEEE++ DV+AK LSLEA A QLL+VTIQLGLEWFVGLG GAGANVLLR+ACDNP +VAGLILAN SA+ AG R Sbjct: 114 RETVCVLTTPGPTRVTIVGDRGGGRSHGGTSAKVGGAREXXGSGGRKRLAVLTMHAAGHNHRTCLGGLEREVAKDEELGAGGVVFFHVDTPGHEEEQAKDVEAKALSLEAQATQLLEVTIQLGLEWFVGLGVGAGANVLLRFACDNPGKVAGLILANASAEAAGRR 279
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A7S2D3T3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3T3_9STRA) HSP 1 Score: 109 bits (272), Expect = 6.370e-25 Identity = 68/162 (41.98%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 31 LPSPPMPRETVQLLTT-PGPTRVTIVGRREKENASEGVPGKRGIGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSDDVDAKELSLEALAAQLLQVTIQLGLEW-FVGLGAGAGANVLLRYACDNPDRVAGLILANPS 510 +P PMP + +L+ T P PT++T++G + R +T H G NHR CFG L LG V H+DVPGHEE S ++LSLE L QL + L L+ FVG+G GAGANVLLRY D+ D+V GLILANPS Sbjct: 114 IPEKPMPPISTRLIETQPHPTKLTLIGDLDTA-------------------RLVYITYHDVGLNHRICFGRFVSHLNSCGMLGEVCMVHIDVPGHEEGASRFAKDEKLSLEQLTQQLNVIVTHLDLKQKFVGIGVGAGANVLLRYTADHGDKVGGLILANPS 256
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A7S2RI68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI68_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.500e-21 Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 43 PMPRETVQLLTT-PGPTRVTIVGRREKENASEGVPGKRGIGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD--DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADG 519 P+P T +++ T P PT+VTIVG + ++T H G NHR CFG L L L V H+D PGHE+ + +D K L+LE LA + Q+ +L + FVG+GAGAGANVLLRY +NP GL+L NP+ G Sbjct: 109 PLPPSTTRVVDTDPIPTKVTIVGDLKTAVT-------------------VLVTYHDIGLNHRWCFGRLMHWLNSANMLSRVAVVHIDAPGHEDGAAALASLDPKVLNLERLAQHVKQILAKLEISRFVGVGAGAGANVLLRYVSENPGVARGLVLQNPTLQG 251
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A553NNB1_9TELE (Uncharacterized protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553NNB1_9TELE) HSP 1 Score: 79.3 bits (194), Expect = 2.990e-14 Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 1 Query: 175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD-DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAG 525 G R +LT H G NH++CF +L + E + HVD PG +E S + S++ L+ L V G++ +GLG GAGAN+L R+A +PD V G++L N SA G G Sbjct: 37 GNRPTILTFHDIGLNHKSCFESLFNHKDMHEIMQHFAVCHVDAPGQQEGASTLPTNYTYPSMDQLSETLPLVLKHFGIKSVIGLGIGAGANILARFALKHPDMVEGVVLVNMSAQGEG 154
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A452RXN8_URSAM (Protein NDRG1 n=1 Tax=Ursus americanus TaxID=9643 RepID=A0A452RXN8_URSAM) HSP 1 Score: 79.0 bits (193), Expect = 4.180e-14 Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEE-ERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLIL--ANPSADG 519 G R +LT H G NH+TC+ L + E HVD PG ++ S V S++ LA L V Q GL+ +G+G GAGA +L R+A DNP+ V GL+L NP A+G Sbjct: 38 GNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPVGYMYPSMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALDNPEMVEGLVLINVNPCAEG 155
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A384BIG4_URSMA (Protein NDRG1 n=8 Tax=Carnivora TaxID=33554 RepID=A0A384BIG4_URSMA) HSP 1 Score: 79.0 bits (193), Expect = 4.430e-14 Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEE-ERSDDVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLIL--ANPSADG 519 G R +LT H G NH+TC+ L + E HVD PG ++ S V S++ LA L V Q GL+ +G+G GAGA +L R+A DNP+ V GL+L NP A+G Sbjct: 54 GNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPVGYMYPSMDQLAEMLPGVLHQFGLKSVIGMGTGAGAYILTRFALDNPEMVEGLVLINVNPCAEG 171
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: UPI0015A8392F (protein NDRG2 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015A8392F) HSP 1 Score: 78.2 bits (191), Expect = 8.080e-14 Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 1 Query: 157 IGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD-DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAG 525 + G GN RR +LT H G H++CF L + E E + G H+D PG EE + + + SLE LA + V +G+G GAGAN+L ++ +NPD V GL+L N A G Sbjct: 54 VHGTGNTRRPPILTFHDVGLEHKSCFSTLFKFEEMQEIVKGFTVIHIDAPGQEEGAAAYPLGYQYASLEQLADMIPAVLQYFNARTVIGVGVGAGANILSNFSLNNPDLVEGLVLINIDAHARG 177
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: H3BNE7_HUMAN (Protein NDRG4 (Fragment) n=3 Tax=Hominidae TaxID=9604 RepID=H3BNE7_HUMAN) HSP 1 Score: 75.5 bits (184), Expect = 9.470e-14 Identity = 47/124 (37.90%), Postives = 61/124 (49.19%), Query Frame = 1 Query: 157 IGGGGNGRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSDDVDAKEL-SLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLILANPSADGAG 525 I G G R A+LT H G NH+ CF + E V HVD PG + S + S+E LAA L V G ++ +G+G GAGA VL ++A PD V GL+L N +G G Sbjct: 4 IRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKG 127
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Match: A0A6A1QBH1_BALPH (Protein NDRG1 n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A6A1QBH1_BALPH) HSP 1 Score: 76.3 bits (186), Expect = 9.710e-14 Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 175 GRRFAVLTVHAAGHNHRTCFGALERELEKDEELGGVVFYHVDVPGHEEERSD-DVDAKELSLEALAAQLLQVTIQLGLEWFVGLGAGAGANVLLRYACDNPDRVAGLIL--ANPSADG 519 G R +LT H G NH+TC+ L + E HVD PG ++ + S++ LA L V Q GL+ +G+G GAGA +L R+A +NP+ V GL+L NP A+G Sbjct: 72 GNRPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDSAASFPTGYMYPSMDQLAEMLPGVLHQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEG 189 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102882.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102882.250.1 >prot_H-elongata_contig102882.250.1 ID=prot_H-elongata_contig102882.250.1|Name=mRNA_H-elongata_contig102882.250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp VAATAAAITNLPSPPMPRETVQLLTTPGPTRVTIVGRREKENASEGVPGKback to top mRNA from alignment at H-elongata_contig102882:655..2097- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102882.250.1 ID=mRNA_H-elongata_contig102882.250.1|Name=mRNA_H-elongata_contig102882.250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig102882:655..2097- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102882:655..2097- >mRNA_H-elongata_contig102882.250.1 ID=mRNA_H-elongata_contig102882.250.1|Name=mRNA_H-elongata_contig102882.250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig102882:655..2097- (Himanthalia elongata Himel1 dioecious)back to top |