mRNA_H-elongata_contig102822.245.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: D8LL63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL63_ECTSI) HSP 1 Score: 216 bits (549), Expect = 8.440e-66 Identity = 103/136 (75.74%), Postives = 118/136 (86.76%), Query Frame = 1 Query: 1 EKEQTSRFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQPRNY 408 E+ Q SRF+H+SSAGVTRPGRPDLD++ EPPAVRMN+MLS+LLTYKLKGEDV+RDS IPATIIRPCALTEEP GAPMIV QGD LKGKISRDDIAELAV +L+ P A+GLTFEVKSD+ FST+W+ G R+Y Sbjct: 304 EEMQNSRFVHLSSAGVTRPGRPDLDMDTEPPAVRMNEMLSHLLTYKLKGEDVIRDSGIPATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLLTPEASGLTFEVKSDLAFSTLWQGAPQGAPARSY 439
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A6H5KMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW5_9PHAE) HSP 1 Score: 218 bits (556), Expect = 3.730e-65 Identity = 104/136 (76.47%), Postives = 117/136 (86.03%), Query Frame = 1 Query: 1 EKEQTSRFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQPRNY 408 E+ Q SR +H+SSAGVTRPGRPDLD++ EPPAVRMN+MLSYLLTYKLKGEDV+RDS IPATIIRPCALTEEP GAPMIV QGD LKGKISRDDIAELAV +L+ P A+GLTFEVKSD+ FST+WE G R+Y Sbjct: 487 EERQNSRLVHLSSAGVTRPGRPDLDIDTEPPAVRMNEMLSYLLTYKLKGEDVIRDSGIPATIIRPCALTEEPAGAPMIVGQGDYLKGKISRDDIAELAVSSLLTPEASGLTFEVKSDLAFSTLWEGAPQGTPARSY 622
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A0G4FWF9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWF9_VITBC) HSP 1 Score: 170 bits (431), Expect = 5.320e-48 Identity = 82/134 (61.19%), Postives = 102/134 (76.12%), Query Frame = 1 Query: 1 EKEQTSRFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQPR 402 E ++ R I +SSAGVTRPGRP LD+E EPPAVRMNDML +LTYKLKGEDVVRDS + ++IRPCALTEEP GAP+ + QGD +KGKISR+D+A+L V +L+ PAA T+E+K +PFS W+ D PR Sbjct: 353 ESAKSPRLIQVSSAGVTRPGRPGLDLEKEPPAVRMNDMLGGILTYKLKGEDVVRDSGVTYSVIRPCALTEEPAGAPLQIGQGDEIKGKISREDVADLVVASLLTPAAANKTYEIKCTLPFSEPWQP--KADAPR 484
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A453ATR9_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ATR9_AEGTS) HSP 1 Score: 161 bits (407), Expect = 1.950e-46 Identity = 79/134 (58.96%), Postives = 100/134 (74.63%), Query Frame = 1 Query: 13 TSRFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQP-RNYE 411 T RF+H+SSAGVTRP RP LD+ +PPAVRMN L +LTYKLKGED++R+S +P TI+RPCALTEEP GA +I QGD + GKISR+++A L V AL +P+A G TFEVKS +PFS + S P ++YE Sbjct: 143 TPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGVPYTIVRPCALTEEPAGADLIFEQGDNITGKISREEVARLCVAALASPSAVGKTFEVKSTVPFSEPFVIDPSNPPPEKDYE 276
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A2V0NW80_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NW80_9CHLO) HSP 1 Score: 167 bits (422), Expect = 3.460e-46 Identity = 79/129 (61.24%), Postives = 95/129 (73.64%), Query Frame = 1 Query: 13 TSRFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQP 399 T R +H+SSAGVTRP RP +DVE EPPAV++ND L LLT+KL GED VR +PA ++RPCALTEEP+G P+ + QGDT+KGKI RDD+AEL V L PAA G TFE+KS +PFS W A S P Sbjct: 419 TPRLVHVSSAGVTRPNRPGIDVEQEPPAVKLNDALGGLLTWKLAGEDAVRGCGVPAAVVRPCALTEEPRGMPVQIDQGDTIKGKIGRDDVAELCVALLDCPAAAGATFEIKSTVPFSQPWTADDSAAAP 547
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A1R3L5G1_ASPOF (NAD(P)-bd_dom domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L5G1_ASPOF) HSP 1 Score: 158 bits (399), Expect = 4.120e-46 Identity = 78/140 (55.71%), Postives = 104/140 (74.29%), Query Frame = 1 Query: 1 EKEQTS--RFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQP-RNYE 411 +K +TS RF+H+SSAGVTRPGRP LD+ +PPAVR+N L ++LTYKLKGED++R+S IP TI+RPCAL+EEP GA +I QGD + GKISR+++A + + AL +P A TFEVKS IPFS + S P ++Y+ Sbjct: 63 QKTETSLLRFVHVSSAGVTRPGRPGLDLSKQPPAVRLNKELGFILTYKLKGEDLIRESGIPYTIVRPCALSEEPAGADLIFDQGDNITGKISREEVARICIAALGSPYACNKTFEVKSTIPFSEPFTVDPSNPPPEKDYD 202
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A7S3U8L1_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3U8L1_9CHLO) HSP 1 Score: 167 bits (422), Expect = 6.100e-46 Identity = 76/126 (60.32%), Postives = 98/126 (77.78%), Query Frame = 1 Query: 22 FIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQP 399 ++H+SSAGVTRP RP +DV+AEPPAV++ND L +L+YKLKGED+VR++ +P I+RPCALTEEP GA ++V QGDT+KGKISR+D+AEL V L P A+ TFE+KS +PFST WE P Sbjct: 479 WVHVSSAGVTRPNRPGIDVDAEPPAVKLNDALGGILSYKLKGEDMVREAGMPFAIVRPCALTEEPAGAELLVDQGDTIKGKISREDVAELCVALLSQPEASSTTFEIKSTVPFSTPWEVDPQNPPP 604
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A2P6Q4X2_ROSCH (Putative NAD(P)-binding domain-containing protein n=4 Tax=Rosoideae TaxID=171638 RepID=A0A2P6Q4X2_ROSCH) HSP 1 Score: 156 bits (394), Expect = 8.920e-46 Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 1 Query: 13 TSRFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFS 363 T RF+H+ SAGVTRP RP LD+ +PPAVR+N L ++LT+KLKGED++R+S IP TI+RPCALTEEP GA +I QGD + GKISR+++A++ V AL +P A G TFEVKS IPFS Sbjct: 36 TPRFVHVGSAGVTRPERPGLDLSKQPPAVRLNKELDFILTFKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEVAQICVAALESPYATGKTFEVKSVIPFS 152
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: UPI00098E195D (uncharacterized protein At2g34460, chloroplastic-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E195D) HSP 1 Score: 154 bits (390), Expect = 1.170e-45 Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 1 Query: 22 FIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQP-RNYE 411 F+H+SSAGVTRPGRP LD+ +PPAVR+N L ++LTYKLKGED++R+S IP TI+RPCAL+EEP GA +I QGD + GKISR+++A + + AL +P A TFEVKS IPFS + S P ++Y+ Sbjct: 2 FVHVSSAGVTRPGRPGLDLSKQPPAVRLNKELGFILTYKLKGEDLIRESGIPYTIVRPCALSEEPAGADLIFDQGDNITGKISREEVARICIAALGSPYACNKTFEVKSTIPFSEPFTVDPSNPPPEKDYD 132
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Match: A0A453ATX5_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ATX5_AEGTS) HSP 1 Score: 161 bits (407), Expect = 1.220e-45 Identity = 79/134 (58.96%), Postives = 100/134 (74.63%), Query Frame = 1 Query: 13 TSRFIHMSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPATIIRPCALTEEPKGAPMIVSQGDTLKGKISRDDIAELAVEALINPAANGLTFEVKSDIPFSTIWEAGRSGDQP-RNYE 411 T RF+H+SSAGVTRP RP LD+ +PPAVRMN L +LTYKLKGED++R+S +P TI+RPCALTEEP GA +I QGD + GKISR+++A L V AL +P+A G TFEVKS +PFS + S P ++YE Sbjct: 219 TPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGVPYTIVRPCALTEEPAGADLIFEQGDNITGKISREEVARLCVAALASPSAVGKTFEVKSTVPFSEPFVIDPSNPPPEKDYE 352 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102822.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102822.245.1 >prot_H-elongata_contig102822.245.1 ID=prot_H-elongata_contig102822.245.1|Name=mRNA_H-elongata_contig102822.245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp MSSAGVTRPGRPDLDVEAEPPAVRMNDMLSYLLTYKLKGEDVVRDSSIPAback to top mRNA from alignment at H-elongata_contig102822:306..2017+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102822.245.1 ID=mRNA_H-elongata_contig102822.245.1|Name=mRNA_H-elongata_contig102822.245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1712bp|location=Sequence derived from alignment at H-elongata_contig102822:306..2017+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102822:306..2017+ >mRNA_H-elongata_contig102822.245.1 ID=mRNA_H-elongata_contig102822.245.1|Name=mRNA_H-elongata_contig102822.245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig102822:306..2017+ (Himanthalia elongata Himel1 dioecious)back to top |