mRNA_H-elongata_contig102821.244.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: D7FWF1_ECTSI (tRNA pseudouridine synthase B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF1_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.290e-43 Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 1 Query: 4 QVEREARPVTVHSLRQVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFELKHALERDEWEYNELCK 255
QVEREAR V V SLRQ DPALPLP LGLE+ECGGGFYVRTL+EDLGR LGTRAHMTALERTKQGPFEL+HAL +EWEY+ LCK
Sbjct: 29 QVEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQGPFELQHALRLEEWEYDRLCK 112
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: A0A6H5KMC7_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC7_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.590e-42 Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 1 Query: 1 VQVEREARPVTVHSLRQVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFELKHALERDEWEYNELCK 255
+ VEREAR V V SLRQ DPALPLP LGLE+ECGGGFYVRTL+EDLGR LGTRAHMTALERTKQGPFEL+HAL +EWEY+ LCK
Sbjct: 106 ITVEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQGPFELRHALRLEEWEYDRLCK 190
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: A0A835Z9D0_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D0_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 6.330e-22 Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 1 Query: 7 VEREARPVTVHSLRQVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFELKHALERDEWEYNEL 249
VER+ARPVT++ L + LP L V+C GG Y+RTL+ D+ R LGTR HMT+L RTKQGPF L+H L++ W + ++
Sbjct: 176 VERDARPVTIYQLEAPAEGVALPSFALNVQCSGGTYIRTLIADIARALGTRGHMTSLVRTKQGPFGLEHCLDQQHWHFEQI 256
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: UPI0014557746 (probable tRNA pseudouridine synthase 1 isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI0014557746) HSP 1 Score: 91.3 bits (225), Expect = 3.240e-20 Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 13 REARPVTVHSLR--QVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFELKHALE-RDEWEYNELCK 255
+ ARPVTVH+L+ Q P P L+V CGGGFYVR L+ DLG+VLGT AH+ LERT+QGPF L+H L+ +EW + +CK
Sbjct: 216 KPARPVTVHNLKCLQFSP----PYFTLDVYCGGGFYVRQLIHDLGKVLGTCAHLVELERTQQGPFTLQHVLQTEEEWTFQNICK 295
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: A0A4W3IJ22_CALMI (tRNA pseudouridine(55) synthase n=6 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3IJ22_CALMI) HSP 1 Score: 88.2 bits (217), Expect = 2.300e-19 Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1 Query: 13 REARPVTVHSLRQVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFELK-HALERDEWEYNELCK 255
R ARPV VHSL D + PL LE+ECGGGFYVR+LV DLG+ L + AH+ LERTKQGPF L+ HAL ++W +E+ K
Sbjct: 119 RPARPVVVHSLSVQDFSPPL--FTLEIECGGGFYVRSLVSDLGKELSSCAHVKELERTKQGPFTLEEHALPEEKWTIDEIAK 198
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: F0YN11_AURAN (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN11_AURAN) HSP 1 Score: 85.5 bits (210), Expect = 3.100e-19 Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 1 Query: 1 VQVEREARPVTVHSLRQVDPA-------LPLPRLGLEVECGGGFYVRTLVEDLGR--VLGTRAHMTALERTKQGPFELKHALERDEWEYNELCK 255
++VERE+RPVT+ L D L LP GL+VEC GG Y+RTL+ DL R + + AHM LERTKQGPFEL L +W+++ +C+
Sbjct: 53 IEVERESRPVTISRLALDDRGVGAVAGPLGLPHFGLDVECSGGTYIRTLISDLARHEAVKSVAHMVELERTKQGPFELGDCLHEADWDFDAICQ 146
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: A0A8B7YYF7_ACAPL (tRNA pseudouridine(55) synthase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YYF7_ACAPL) HSP 1 Score: 87.4 bits (215), Expect = 5.140e-19 Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1 Query: 13 REARPVTVHSLRQVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFEL-KHALERDEWEYNELCK 255
+ ARPVTVHSL+ V+ P L+V CGGGFYVR L+EDLG+ L T AH+ L RT+QGPF L HAL D W + +C+
Sbjct: 173 KPARPVTVHSLKCVE--FSPPYFTLDVHCGGGFYVRQLIEDLGQDLRTNAHLAELTRTQQGPFTLANHALAEDRWTFEHICR 252
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: UPI0018D95F47 (probable tRNA pseudouridine synthase 1 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D95F47) HSP 1 Score: 87.0 bits (214), Expect = 8.020e-19 Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1 Query: 13 REARPVTVHSLRQVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFEL-KHALERDEWEYNELCK 255
+ ARPVTVHSL V P L++ CGGGFYVR L++DLG+ +GT AH+ L RT+QGPF L KHAL D+W +C+
Sbjct: 180 KPARPVTVHSLECVQ--FSPPYFTLDIHCGGGFYVRQLIQDLGQDMGTNAHLAELTRTQQGPFTLAKHALAEDKWTLEHICE 259
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: F0YN09_AURAN (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN09_AURAN) HSP 1 Score: 85.5 bits (210), Expect = 1.670e-18 Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 1 Query: 1 VQVEREARPVTVHSLRQVDPA-------LPLPRLGLEVECGGGFYVRTLVEDLGR--VLGTRAHMTALERTKQGPFELKHALERDEWEYNELCK 255
++VERE+RPVT+ L D L LP GL+VEC GG Y+RTL+ DL R + + AHM LERTKQGPFEL L +W+++ +C+
Sbjct: 144 IEVERESRPVTISRLALDDRGVGAVAGPLGLPHFGLDVECSGGTYIRTLISDLARHEAVKSVAHMVELERTKQGPFELGDCLHEADWDFDAICQ 237
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Match: A0A8J2SXF4_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXF4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.860e-18 Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1 Query: 1 VQVEREARPVTVHSLRQVDPA--------LPLPRLGLEVECGGGFYVRTLVEDLGRVLGTRAHMTALERTKQGPFELKHALERDEW-EYNELC 252
++VEREAR V+V LR VD L LP GL+VEC GG Y+RTL++DL R G+ HM LERT+QGPF L+H L + W +++ +C
Sbjct: 184 LEVEREARQVSVSRLRMVDDRGVGSHEAPLSLPFFGLDVECSGGTYIRTLIDDLAREAGSCGHMVELERTRQGPFGLEHCLGDEAWGDFDAVC 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102821.244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102821.244.1 >prot_H-elongata_contig102821.244.1 ID=prot_H-elongata_contig102821.244.1|Name=mRNA_H-elongata_contig102821.244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp VQVEREARPVTVHSLRQVDPALPLPRLGLEVECGGGFYVRTLVEDLGRVLback to top mRNA from alignment at H-elongata_contig102821:221..775+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102821.244.1 ID=mRNA_H-elongata_contig102821.244.1|Name=mRNA_H-elongata_contig102821.244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig102821:221..775+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102821:221..775+ >mRNA_H-elongata_contig102821.244.1 ID=mRNA_H-elongata_contig102821.244.1|Name=mRNA_H-elongata_contig102821.244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig102821:221..775+ (Himanthalia elongata Himel1 dioecious)back to top |