mRNA_H-elongata_contig102742.238.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: D8LGE8_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGE8_ECTSI) HSP 1 Score: 204 bits (519), Expect = 5.150e-63 Identity = 107/175 (61.14%), Postives = 130/175 (74.29%), Query Frame = 1 Query: 1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRR------------------EAGAGG---------------EYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 GPTLHAV+Y L+EETA+AL DLE+AEP+VRLLAEYFRRAESEPEMR RFKA+AVVNN + I+M RL++PFNGKP+LITESG+L+RG RR AG+ G E+LE+DIHVR+WNFMARKGL+KL PKF ++NVS+AFLVEGR+DSE+ Sbjct: 117 GPTLHAVFYLTLREETAKALQDLESAEPSVRLLAEYFRRAESEPEMRTRFKAIAVVNNQEVINMARLIAPFNGKPVLITESGTLMRGTRRPGAEGEGAPDSVARVESDSAGSNGXXXXXXXXXXXFGADEFLELDIHVRRWNFMARKGLSKLTPKFGLINVSVAFLVEGREDSEL 291
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A835ZBF7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF7_9STRA) HSP 1 Score: 110 bits (276), Expect = 6.930e-26 Identity = 62/148 (41.89%), Postives = 90/148 (60.81%), Query Frame = 1 Query: 1 GPTLHAVYYFKLKEETARAL-----DDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGG-EYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 GPTL V+Y L E ARAL A PA++LL ++ AE++ R RFKA+A +NNL + V NG+P LIT+SG++ G+ R G G YLE+D +VR W F+AR+ L L+P+ +++SI F++EGR D+E+ Sbjct: 281 GPTLQCVFYLALSAEAARALAXXXXXXXXALPPALQLLRDWCEGAEADAHTRSRFKAMARINNLHDAGLPGPVVQNNGRPTLITKSGTVTSGVGRVRGGGSARYLELDCNVRHWCFLARRALRHLLPRAPRVHLSIGFVIEGRADAEL 428
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: W7U5D7_9STRA (EDR2_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5D7_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.810e-25 Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 1 Query: 1 GPTLHAVYYFKLKEETARAL-----------------DDLEA--AEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 GP A++ F LKE T L D EA PA++LL EYFRRA +P++R R K +A N+D + + +S +NGKP+LIT+SG L +GI G Y+EMDI V ++ ++ARKG L +F+ + + IAFLVEGR++ E+ Sbjct: 214 GPGRSAIFVFALKESTVDMLEAHADSPSAAVRERKGKDHREAFSVPPALQLLQEYFRRAPHDPDVRGRLKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSNGEDLLYIEMDICVHRFAYVARKGFRYLQKRFSKMILDIAFLVEGREEDEL 374
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2KYG5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYG5_9STRA) HSP 1 Score: 106 bits (264), Expect = 7.190e-24 Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = 1 Query: 1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 GP AV Y + ++T L DL+ A PAV+LL E+ RRAE + R R K + V ++++ + + ++ +NGKP LIT SG+L R A YLEM++++R WN +ARKG++ L P ++A +EGRD+ E+ Sbjct: 557 GPCCMAVLYLAISKQTLLELKDLKTASPAVKLLEEWCRRAEGDFAFRSRCKFMVVADDVEALGVPSFLTRYNGKPCLITSSGTLTR----HRDAASHYLEMNVNIRMWNALARKGIHSLKPYIPSATFNLAITIEGRDNDEL 694
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2MX10_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX10_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.740e-23 Identity = 53/141 (37.59%), Postives = 86/141 (60.99%), Query Frame = 1 Query: 4 PTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 P+ V F +++ L D++ A PAV+LLAE+ R AE+ E R RFKA+ +V ++++ + ++ +NGKP LIT+SG+ R + Y+EM I+V W ++ARKG+ L+P F L +++ F +EGR D E+ Sbjct: 119 PSYICVIVFAIEQWVVEELKDIDNASPAVKLLAEWCREAETNVEFRGRFKAIGLVEEMEKMGIPGFITQYNGKPTLITKSGNFTRHEK--------YIEMAINVHLWAYVARKGMLTLLPSFAKLLINVGFTIEGRSDMEL 251
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2M600_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M600_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.080e-22 Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1 Query: 1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 G T F L ++T L D++ A P V+LL+E+ RRAESEP+ + RFK + + +++ + + + +NGKP L+T+SG+ R Y+E I+V W F+ARKGL+ LMP F ++ F +E R D E+ Sbjct: 441 GDTYSIPMVFVLSKDTLEQLKDIDTASPGVKLLSEWCRRAESEPDFKGRFKCMGQIEDIESTSIPKFIHGYNGKPALVTKSGTFTRH--------ENYIEFTINVNYWAFLARKGLHSLMPYFQDFIFNVGFTIEARHDEEM 574
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S1ZG30_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG30_TRICV) HSP 1 Score: 95.5 bits (236), Expect = 1.940e-21 Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 1 Query: 19 VYYFKLKEETARALDDLEA---AEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 ++Y K T R LD+L PA RL + + +++ +R RFK +A+V NL + L P+NGKP+LITESGS RG E G +YLEM +V KW F+A+KG L+P+F + + + F VE ++SE+ Sbjct: 59 IFYLK---PTQRLLDELTGKIPTSPAARLFLRWCQTCDTDRALRSRFKCMALVRNLKSHKLGWL-DPYNGKPVLITESGSARRGTTSE---GVKYLEMKSNVHKWAFVAKKGFVSLIPRFREMRIDVGFTVESTEESEM 190
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2W974_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W974_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.530e-21 Identity = 52/142 (36.62%), Postives = 85/142 (59.86%), Query Frame = 1 Query: 1 GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 GPTL+AV+YF L+EET +AL LE A AV+LL + R A ++P + RFK + ++ N +++ M ++ +NGKP+LI + S ++G + + M ++VR W +AR GL+ L ++ + F +EGR D E+ Sbjct: 171 GPTLNAVFYFGLREETQQALASLETAPKAVQLLETFCRSAHADPSVFNRFKCIGMLRNYEEVGMPSIMKGYNGKPVLI-RNRSAVKGGSGVMDQQQDSIIMHVNVRLWPLLARTGLHTLFGASAKCDLDVGFTIEGRADDEL 311
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S4V5X3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V5X3_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 6.040e-21 Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 1 Query: 25 YFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 Y K + + L PA +L A + E++ MR RFK +A V N+++ ++ +V +NGKP+L+TESG G+ + G YLEM +V W+FMA+KG L+PKF +++ + +E +DD E+ Sbjct: 26 YLKPSKRFLQELSGQRPKTPATKLFANWCATCETDKTMRSRFKCMASVRNIEKHNLG-MVKSYNGKPVLVTESGCAKWGVTEDGGVN--YLEMSANVHAWSFMAKKGFVSLIPKFQEISLDVGITIEAKDDDEM 156
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Match: A0A7S2EV63_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV63_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 4.300e-20 Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 25 YFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFKALAVVNNLDQIDMNRLVSPFNGKPILITESGSLLRGIRREAGAGGEYLEMDIHVRKWNFMARKGLNKLMPKFNMLNVSIAFLVEGRDDSEV 426 Y K + + L PA +L + E++ MR RFK +A V N+++ ++ +V +NGKP+L+TESG G+ + G YLEM +V W+FMA+KG L+PKF +++ + +E +DD E+ Sbjct: 53 YLKPSKRFLQELSGQRPKTPATKLFVNWCATCETDKTMRSRFKCMASVRNIEKHNLG-MVKSYNGKPVLVTESGCAKWGVTEDGGVN--YLEMSANVHAWSFMAKKGFVSLIPKFQEISLDVGITIEAKDDDEM 183 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102742.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102742.238.1 >prot_H-elongata_contig102742.238.1 ID=prot_H-elongata_contig102742.238.1|Name=mRNA_H-elongata_contig102742.238.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp GPTLHAVYYFKLKEETARALDDLEAAEPAVRLLAEYFRRAESEPEMRKRFback to top mRNA from alignment at H-elongata_contig102742:971..1728+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102742.238.1 ID=mRNA_H-elongata_contig102742.238.1|Name=mRNA_H-elongata_contig102742.238.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=758bp|location=Sequence derived from alignment at H-elongata_contig102742:971..1728+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102742:971..1728+ >mRNA_H-elongata_contig102742.238.1 ID=mRNA_H-elongata_contig102742.238.1|Name=mRNA_H-elongata_contig102742.238.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig102742:971..1728+ (Himanthalia elongata Himel1 dioecious)back to top |