mRNA_H-elongata_contig102725.235.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: D7G2J8_ECTSI (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2J8_ECTSI) HSP 1 Score: 285 bits (730), Expect = 1.130e-94 Identity = 145/183 (79.23%), Postives = 164/183 (89.62%), Query Frame = 1 Query: 1 GRSMGGLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVEEAVVPALHEAVPELRHYKTGSGLPFRCSKLPSLRLCIHTGLDREPALLPFRSALLYSPPVSPLDKINGKVR 549 GR +GGLASK+D+VLAEIPMKEAVRYKKGNLKWTR+DV +HSEA CGLLELGCKAGDT+A+WLPE SEKHVAQLAAARIGM+VAEV+ L SA AV K LE SGAAVVLVEE+VVP+L EAVPELRHY T SGLPFR +KLPSLRLCIHTGL+RE ALL FRSALLY+PPVSPL ++NG+++ Sbjct: 53 GRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLGSAAAVEKILEESGAAVVLVEESVVPSLIEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAALLHFRSALLYTPPVSPLAQVNGQIK 235
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: A0A7S3XZ81_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ81_HETAK) HSP 1 Score: 136 bits (342), Expect = 4.050e-36 Identity = 73/159 (45.91%), Postives = 99/159 (62.26%), Query Frame = 1 Query: 1 GRSMGGLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVEEAVVPA-----LHEAVPELRHYKTGSGLPFRCSKLPSLRLCIHTGLD 462 GRS+ +AS+++ +AE KEAVRY N+KWTR DV ++A GLLE C GD+IAVWLPE SEKHV QLAAA+ G++ A+ + + + EA+G L SGA V++ + L +A+PEL Y +G PF S P+L+L IHTG D Sbjct: 44 GRSLASIASQINSAVAENEYKEAVRYTHKNIKWTRKDVQFQTDALANGLLEAACNPGDSIAVWLPECSEKHVTQLAAAKAGLVFADFDLSIDTPEALGDALADSGAKVLIFNSELDAVNCGRVLFDAIPELSGYYNNTGAPFHSSSFPNLKLMIHTGYD 202
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: A0A835Z6E9_9STRA (AMP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E9_9STRA) HSP 1 Score: 124 bits (312), Expect = 6.710e-32 Identity = 69/187 (36.90%), Postives = 103/187 (55.08%), Query Frame = 1 Query: 4 RSMGGLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVEEAVVPALHEAVPELRHYKTG---SGLPFRCSKLPSLRLCIHTGLDREPALLPFRSALLYSPPVSPLDKINGKVRGE 555 RS +A+ L+++ E+PMK+ VR+ K N WTR ++ SEA G +LGC+ GD +A+WLP+ +EK QLAAA G + V+ L E K L +GA + +V E +L +A+PE+ Y SG FR + LR C HTG D E L FR+ L+Y +SP+ ++ + + Sbjct: 24 RSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDD 210
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: A0A7S2XZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZH5_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.890e-31 Identity = 73/178 (41.01%), Postives = 109/178 (61.24%), Query Frame = 1 Query: 19 LASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPE-SSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVEEA-----VVPALHEAVPELRHYKTGSGLPFRCSKLPSLRLCIHTGLDREPALLPFRSALLYSPPVSPLDKI 534 +A++L +V PMKEAVRY+ N K TR D++ +S A GLLEL DT+ +WLP+ S+EKHVA LAAA++G+ VA+V+Q + EA+ + L +GA +++++ + AL +AVPEL H+ G+PF LP LR+ HTG D F+ L+++P S + KI Sbjct: 32 IAAQLKDVTDANPMKEAVRYQDKNFKCTREDIDAYSYALSNGLLELCVAPNDTMVLWLPDDSAEKHVAMLAAAKMGVTVADVSQDVQKPEAIRQVLSDTGARMIMIDTEHPDYNYLHALVKAVPELLHFNDKHGVPFHSHTLPKLRMFFHTGYDVIKGFCNFKHVLMFNPGESQVPKI 209
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: A0A7S2CY20_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY20_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.050e-24 Identity = 58/171 (33.92%), Postives = 98/171 (57.31%), Query Frame = 1 Query: 16 GLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLP-ESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVEEAV-----VPALHEAVPELRHYKTGSGLPFRCSKLPSLRLCIHTGLDREPALLPFRSALLYSP 510 G+ KL ++ PM E V++ K NLKW+ DV +S+AF GL++ G KAGD++AVWLP +++E + AAARIG+++ E++ ++ A+A+ L + ++ + L E +PEL+HY G FR +PS++ +H +D P + F+ ++Y P Sbjct: 39 GIQEKLATLVDAHPMMETVQFNKQNLKWSMADVKRYSDAFSSGLVDNGWKAGDSLAVWLPADTAESLTVKFAAARIGLLLVEIDMSVSEADAIRSILVENNCKGLIYDLEAGDRHNTDILKEIMPELKHYDDKFGDQFRSRVVPSMKFIMHVNMDLIPGVGNFKYQMVYDP 209
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: A0A7S2WCA9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCA9_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.440e-21 Identity = 54/173 (31.21%), Postives = 98/173 (56.65%), Query Frame = 1 Query: 19 LASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLP-ESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVEEAVVPALHE-----AVPELRHYKTGSGLPFRCSKLPSLRLCIHTGLDREPALLPFRSALLYSPPVS 519 ++ L + ++P+KEA+ +K N+KW+ D+ HS+A GLLELG ++GD +AVW+ + E+ V + A++R G+ + E++ G++ E++ K L + A ++ + + ++ A+PEL + G FR +PS+ L HTG+D P ++ + L Y P S Sbjct: 31 ISQNLAQRCEDLPLKEAIAFKVNNVKWSYQDLKEHSDALAAGLLELGWRSGDVLAVWVESDCQEQIVTRFASSRAGLGLVEIDAGVSDPESLRKILNETNAKGLVFDPVMGDRYNQDIVEAALPELASFDDRFGGRFRSRAVPSIGLVAHTGMDLVPGVVNLKHLLAYDAPES 203
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: A0A3M6VFT6_9STRA (AMP-binding domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFT6_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.700e-12 Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 4 RSMGGLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVE 336 RS+ +++ LDE +A +P KEA+R K +++W+ ++N E G L+L +AGD +A+WLP S E V QLA AR G+ +A + +A AE + L+ S A+ ++ E Sbjct: 19 RSVSTISAALDEAVARLPHKEALRSVKQDVRWSFKELNARVEELANGFLDLQFEAGDVVALWLPLSVENVVTQLAVARAGLTLAVIEPQVAQAEELAFILQDSKASGLVFE 129
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: UPI001D27108A (AMP-binding protein n=1 Tax=Bacillus sp. JJ-125 TaxID=2880967 RepID=UPI001D27108A) HSP 1 Score: 73.9 bits (180), Expect = 4.740e-12 Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = 1 Query: 31 LDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVEEA----VVPALHEAVPELRHYKTGSGLPFRCSKLPSLRLCIHTGLDREPAL 477 LD+ +++ P KEAV Y + +L++T T+ GL+ LG K GD IA+W E + Q A+A+IG ++ VN E ++ ++L++E + L++ PELR K G + +KLP L+ I+ G D P + Sbjct: 13 LDDTVSKYPDKEAVVYVEEDLRYTYTEFQQIINQAAKGLMSLGIKKGDHIAIWASNKPEWVITQFASAKIGAVLVTVNTSYQIKELEYLLRQSDSTTLILMDEFKSENYLEILYQLCPELRQSKVGE---LKANKLPLLKNIIYLGSDNHPGM 162
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: G5A2G9_PHYSP (AMP-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A2G9_PHYSP) HSP 1 Score: 72.8 bits (177), Expect = 6.130e-12 Identity = 40/111 (36.04%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 4 RSMGGLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVE 336 R+ + + LDE +A +P KEA+R K +++W+ ++N + G L+L +AGD +A+WLP S+E + QLAAAR G+ +A + ++ AE + L S AA ++ E Sbjct: 18 RAASTVGAALDEAVARLPHKEALRSVKQDVRWSFKELNAAVDELASGFLDLQFRAGDVVALWLPNSAENVLTQLAAARAGLTLAVIEPEVSQAEELAFILHDSQAAGLVFE 128
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Match: M4BHS1_HYAAE (AMP-binding domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BHS1_HYAAE) HSP 1 Score: 68.2 bits (165), Expect = 3.120e-11 Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 4 RSMGGLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGCKAGDTIAVWLPESSEKHVAQLAAARIGMIVAEVNQGLASAEAVGKFLEASGAAVVLVE 336 RS+ + + LD+ +A +P KEA+R +++W+ ++ + G L+L + GD +A+WLP S E V QLAAAR G+ +A + +A E + L+ SGA+ ++ E Sbjct: 15 RSVSTIGASLDQAVARLPHKEALRGVTQDVRWSFQELRAKVDELANGFLDLKFQVGDVVALWLPNSVENVVTQLAAARAGLTLAVIAPEVAEMEELAFILQDSGASGLVFE 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102725.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102725.235.1 >prot_H-elongata_contig102725.235.1 ID=prot_H-elongata_contig102725.235.1|Name=mRNA_H-elongata_contig102725.235.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp MGGLASKLDEVLAEIPMKEAVRYKKGNLKWTRTDVNNHSEAFVCGLLELGback to top mRNA from alignment at H-elongata_contig102725:219..1818+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102725.235.1 ID=mRNA_H-elongata_contig102725.235.1|Name=mRNA_H-elongata_contig102725.235.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1600bp|location=Sequence derived from alignment at H-elongata_contig102725:219..1818+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102725:219..1818+ >mRNA_H-elongata_contig102725.235.1 ID=mRNA_H-elongata_contig102725.235.1|Name=mRNA_H-elongata_contig102725.235.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig102725:219..1818+ (Himanthalia elongata Himel1 dioecious)back to top |