mRNA_H-elongata_contig10269.231.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.280e-43 Identity = 97/224 (43.30%), Postives = 122/224 (54.46%), Query Frame = 1 Query: 229 RQPRDFKPVQVLATALDPRRKMFHGVEYEEKTEVGQLVQNEVVKIALKNRQGKMPGSASSQQ----------------------------------------------------SSVAAPLATVVEDDSSRKRPRGGFMVAAQSAESGTSFRVYLDPLYWWRVRSADFPHLASLAHRVLAIPAMQAESERIFCCAGDIITNNRNKLAPTTVEVLVLLCHLWEMV 744 RQP FKPVQVLATALDPR K+ +GV+ +EK +V +LV+ E VKIA++ R + ASSQQ SS + + V + + + G + + E +VYLDPL WWRVR ADFPHLA+LA RVLAIPA QAESER+F CAG+I+T NRN LAPTTVE+LVLL H W++V Sbjct: 70 RQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGA---KVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 290
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 105 bits (263), Expect = 2.540e-22 Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 97 VTGSLVLSFIYGLRRNLDKTIDNLKEVPVSADADINTAKAEVMP---------------------------RQPRDFKPVQVLATALDPRRKMFHGVEYEEKTEVGQLVQNEVVKIALKNRQGKMPGSASSQQSSVAAP-----LATVVEDDSSRKRPRGG 483 VTGSLV+ FIY LR +L+ ID+L E+P +DA++NTA A VMP RQP FKPV VLATALDPR K+ +GV+ +EK +V +LVQ E VKIA++ R + SSQQ AA + ++SSRKRPR G Sbjct: 198 VTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENSQRTSSQQGPEAAAGPALSSTSAGAEESSRKRPRVG 358
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.170e-20 Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1 Query: 565 SADFPHLASLAHRVLAIPAMQAESERIFCCAGDIITNNRNKLAPTTVEVLVLLCHLWEMV 744 S DFPHLA+LA RVLAIPA QA+SER+F CAG+I+T NRN LAPTTVE+LVLL H W++V Sbjct: 151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 210
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.650e-17 Identity = 73/221 (33.03%), Postives = 105/221 (47.51%), Query Frame = 1 Query: 1 MLTAADWVVLDIILPILEPFMQPQTLLKGRQYVTGSLVLSFIYGLRRNLDKTIDNLKEVPVSADADINTAKAEVMP---------------------------RQPRDFKPVQVLATALDPRRKMFHGVEYEEKTEVGQLVQNEVVKIALKNRQGKMPGSASSQQSSVAAPLATVVEDDSSRKRPRGGFMVAAQSAESGTSFRVYLDPLYW----WRVRSA 570 +L DW VL ++ P+L PFM Q L+ + VT SLV ++I LR LD+ I+ L+ A++ + AK +++ RQPR FK QVLATALDPR K +G+E E ++V + V NE VK+A++ + + SA + S + A R+R GF A SA G S +V + L WR SA Sbjct: 165 LLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAGASSSPIPVEPAAAAAYQPRRRR---GFATA--SAAHGASSKVPMRALRLQGSRWRASSA 380
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A1A8B204_NOTFU (6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 1 n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8B204_NOTFU) HSP 1 Score: 72.8 bits (177), Expect = 1.170e-12 Identity = 38/97 (39.18%), Postives = 51/97 (52.58%), Query Frame = 1 Query: 433 LATVVEDDSSRKRPRGGFMVAAQSAESGTSFRVYLDPLYWWRVRSADFPHLASLAHRVLAIPAMQAESERIFCCAGDIITNNRNKLAPTTVEVLVLL 723 LA VVED+ S S V DP WW+ FPH+A +A R+L +P SERIF AGDI++ NR++LAP +V+ L+ L Sbjct: 36 LAQVVEDE-------------VASYRLAESIGVDADPFRWWKTNEHKFPHVAKVAKRLLCVPGTSVPSERIFSTAGDIVSANRSRLAPDSVDRLIFL 119
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A1A7ZKZ8_NOTFU (Zinc finger, BED domain containing 4 (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZKZ8_NOTFU) HSP 1 Score: 75.9 bits (185), Expect = 1.510e-12 Identity = 67/269 (24.91%), Postives = 134/269 (49.81%), Query Frame = 1 Query: 4 LTAADWVVLDIILPILEPFMQPQTLLKGRQYVTGSLVLSFIYGLRRNL------DKTIDNLKEVPVSADADINTAKAEVMPRQPRDFKPVQVLATALDPRRKMFH-----GVEYEEKTEVGQLVQNEVVKIALKNRQGKMPGSASSQQSSVAAPLATVVEDDSSRKRPRGGFMVAAQSAESGTSFRVYL---------DPLYWWRVRSADFPHLASLAHRVLAIPAMQAESERIFCCAGDIITNNRNKLAPTTVEVLVLL---CH-LWE 738 LTA+ W +++ +L P ++ T ++ T + V+ I LRR L D+ + +K + A + T AEV + +P+ +AT +DPR K + + + + + + ++++ E ++A + + P S + +Q + ++ L +++++ ++P V+ SA+ R+YL +PL +W+ + FP LA++A + L P +SER+F +I+ NRN+L+P +E+L+ L H +WE Sbjct: 34 LTASQWTLMENTAEVLVP-LEELTREVSKETATAADVIPAISALRRVLSREDTTDQGVRTMKRTLLEA---VETRFAEV------EKEPLYSIATLVDPRYKDRYFTKSDHLRFAKDSLIQEVMKMEENRVASEEPEAAEPVSKAPRQGAGSS-LGSILDEILEERQPEAQ-SVSTTSAD--VQVRIYLSEQTIPRKSNPLDYWKTHATQFPSLAAVATKFLCAPCTSVDSERLFSAVSNILDENRNRLSPDKLEMLIFLKKNMHFIWE 288
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 2.570e-12 Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 1 Query: 163 NLKEVPVSADADINTAKAEVMP---------------------------RQPRDFKPVQVLATALDPRRKMFHGVEYEEKTEVGQLVQNE-VVKIALKNRQGKMPGSASSQQ 414 +L E+P +DA++NTA+A VMP RQP FKPVQVLATALDPR K+ HGV+ +EK +V +LVQ E VKIA++ R + SSQQ Sbjct: 143 DLAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVETRNAENSQRTSSQQ 254
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A1A8MBN7_9TELE (Zinc finger, BED domain containing 4 n=3 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8MBN7_9TELE) HSP 1 Score: 76.3 bits (186), Expect = 3.270e-12 Identity = 67/269 (24.91%), Postives = 134/269 (49.81%), Query Frame = 1 Query: 4 LTAADWVVLDIILPILEPFMQPQTLLKGRQYVTGSLVLSFIYGLRRNL------DKTIDNLKEVPVSADADINTAKAEVMPRQPRDFKPVQVLATALDPRRKMFH-----GVEYEEKTEVGQLVQNEVVKIALKNRQGKMPGSASSQQSSVAAPLATVVEDDSSRKRPRGGFMVAAQSAESGTSFRVYL---------DPLYWWRVRSADFPHLASLAHRVLAIPAMQAESERIFCCAGDIITNNRNKLAPTTVEVLVLL---CH-LWE 738 LT++ W +++ +L P ++ T ++ T + V+ I LRR L D+ + +K + A + T AEV + +P+ +AT +DPR K + + + + + + ++++ E ++A K + P S + +Q + ++ L +++++ ++P V+ SA+ R+YL +PL +W+ + FP LA++A + L P +SER+F +I+ NRN+L+P +E+L+ L H +WE Sbjct: 346 LTSSQWTLMENTAEVLVP-LEELTREVSKETATAADVIPAISALRRVLSREQTTDQGVRTMKRTLLEA---VETRFAEV------EKEPLYSIATLVDPRYKDRYFTKSDHLRFAKDSLIQEVMKMEENRVASKEPEAAEPVSKAPRQGAGSS-LGSILDEILEERQPEAQ-SVSTTSAD--VQVRIYLSEQTIPRKSNPLDYWKTHATQFPSLAAVATKFLCAPCTSVDSERLFSAVSNILDENRNRLSPDKLEMLIFLKKNMHFIWE 600
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A1A8PFM2_9TELE (Zinc finger, BED domain containing 4 n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8PFM2_9TELE) HSP 1 Score: 73.2 bits (178), Expect = 2.520e-11 Identity = 66/269 (24.54%), Postives = 133/269 (49.44%), Query Frame = 1 Query: 4 LTAADWVVLDIILPILEPFMQPQTLLKGRQYVTGSLVLSFIYGLRRNL------DKTIDNLKEVPVSADADINTAKAEVMPRQPRDFKPVQVLATALDPRRKMFH-----GVEYEEKTEVGQLVQNEVVKIALKNRQGKMPGSASSQQSSVAAPLATVVEDDSSRKRPRGGFMVAAQSAESGTSFRVYL---------DPLYWWRVRSADFPHLASLAHRVLAIPAMQAESERIFCCAGDIITNNRNKLAPTTVEVLVLL---CH-LWE 738 LT++ W +++ +L P ++ T ++ T + V+ I LRR L D+ + +K + A + T AEV + + + +AT +DPR K + + + + + + ++++ E ++A K + P S + +Q + ++ L +++++ ++P V+ SA+ R+YL +PL +W+ + FP LA++A + L P +SER+F +I+ NRN+L+P +E+L+ L H +WE Sbjct: 121 LTSSQWTLMENTAEVLVP-LEELTREVSKETATAADVIPAISALRRVLSREQTTDQGVRTMKRTLLEA---VETRFAEV------EKETLYSIATLVDPRYKDRYFTKSDHLRFAKDSLIQEVMKMEENRVASKEPEAAEPVSKAPRQGAGSS-LGSILDEILEERQPEAQ-SVSTTSAD--VQVRIYLSEQTIPRKSNPLDYWKTHATQFPSLAAVATKFLCAPCTSVDSERLFSAVSNILDENRNRLSPDKLEMLIFLKKNMHFIWE 375
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 3.060e-11 Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 541 PLYWWRVRSADFPHLASLAHRVLAIPAMQAESERIFCCAGDIITNNRNKLAPTTVEVLVLL 723 PL WWRV++ ++P LASLA RVL IPA QA+SER+F AG ++T R ++ P V ++V L Sbjct: 480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFL 540 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10269.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10269.231.1 >prot_H-elongata_contig10269.231.1 ID=prot_H-elongata_contig10269.231.1|Name=mRNA_H-elongata_contig10269.231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp MLTAADWVVLDIILPILEPFMQPQTLLKGRQYVTGSLVLSFIYGLRRNLDback to top mRNA from alignment at H-elongata_contig10269:5040..5999+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10269.231.1 ID=mRNA_H-elongata_contig10269.231.1|Name=mRNA_H-elongata_contig10269.231.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=960bp|location=Sequence derived from alignment at H-elongata_contig10269:5040..5999+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10269:5040..5999+ >mRNA_H-elongata_contig10269.231.1 ID=mRNA_H-elongata_contig10269.231.1|Name=mRNA_H-elongata_contig10269.231.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig10269:5040..5999+ (Himanthalia elongata Himel1 dioecious)back to top |