mRNA_H-elongata_contig102579.223.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.130e-30 Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1 Query: 1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 VDV+ DLRPPEPPFGLA+VQSVKT YFPQ +AC+ L I VFGR+VGSV V+PG++DLGLNLKQN RYQLLGYSR Sbjct: 199 VDVLADLRPPEPPFGLAIVQSVKTAYFPQHKACQTLGISPQVFGRIVGSVSVDPGRVDLGLNLKQNGRYQLLGYSR 274
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI) HSP 1 Score: 120 bits (300), Expect = 6.520e-30 Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1 Query: 1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 VDV+ DLRPPEPPFGLA+VQSVKT YFPQ +AC+ L I VFGR+VGSV V+PG++DL LNLKQN RYQLLGYSR Sbjct: 332 VDVLADLRPPEPPFGLAIVQSVKTAYFPQHKACQTLGISPQVFGRIVGSVSVDPGRVDLALNLKQNGRYQLLGYSR 407
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.240e-23 Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 Query: 1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 VDV+VDLRPPEPPFG AV +V+ Y+P C+ L I+ VFG+VVG+V +PG+ D+GLNLK N RYQLLGYSR Sbjct: 830 VDVVVDLRPPEPPFGAAVAAAVQDRYYPAHAVCQRLRIRPDVFGKVVGTVNADPGRYDIGLNLKANGRYQLLGYSR 905
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S3MGQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGQ7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 6.520e-19 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1 Query: 1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 VDV L PPEPPFG ++ S+K Y+ + C +L I SV G++VG V V+PG+ DLGLNLK+N +YQLLGYS+ Sbjct: 415 VDVEFTLYPPEPPFGYSIANSIKEEYYTSKDLCALLQITPSVLGKIVGMVRVDPGRADLGLNLKRNGQYQLLGYSQ 490
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK) HSP 1 Score: 85.9 bits (211), Expect = 7.890e-18 Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 1 Query: 7 VIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 V+V+ R PEPPFGL + +S++ Y P + + L ++ VFG+VVGSV +EPG++++GLNLK N ++QLLGYSR Sbjct: 756 VVVEERDPEPPFGLNIARSIQEQYVPAPQLARALGLRGDVFGKVVGSVRIEPGRIEVGLNLKWNGQFQLLGYSR 829
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S0BVY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVY8_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.550e-14 Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 13 VDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 V + PPEPPFGLA+ +SVK Y A K+L + SVFG++ GS+ V+PG+ DLGLNLK + + GY+R Sbjct: 161 VRIIPPEPPFGLAIARSVKESYVSSHDAAKVLHLDPSVFGKITGSLSVDPGRYDLGLNLKYKEGLCVSGYTR 232
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S2UEG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEG0_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 3.350e-14 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 V V V + PPEPPFGLA+ +SV+ Y A K+L I +FG++ GS+ +PG+ DLGLNLK +LGY+R Sbjct: 136 VSVTVAVVPPEPPFGLAIARSVQESYISSSDAAKVLNIHPGIFGKITGSLHFDPGRYDLGLNLKYKHDLSVLGYTR 211
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.310e-13 Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1 Query: 13 VDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 V + PPEPPFGLA+ +SV+ Y A K+L + V G++ GS+LV PG+ DLGLNLK +LGY+R Sbjct: 631 VHVLPPEPPFGLAIAKSVQDTYVSSIEAAKLLKLNPGVLGKLTGSLLVNPGRYDLGLNLKFKKEMYVLGYTR 702
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A7S2RYB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYB5_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 9.320e-13 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 1 VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 V + V + PPEPPFGLA+ +SV+ Y A ++L + +FG++ GS+ PG+ DLGLNLK +LGY+R Sbjct: 79 VGIKVLVIPPEPPFGLAIARSVQESYISSFDASRVLKMNPGIFGKIAGSLHFNPGRYDLGLNLKYKQDLCVLGYTR 154
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Match: A0A6G0WCS2_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCS2_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 3.840e-12 Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 7 VIVDLRPP--EPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVLVEPGKLDLGLNLKQNDRYQLLGYSR 228 V V +R P EPPFG A+ +S+ H++P C+ L I+ S GR+ GS+LV PG+ D+GLN+K L GY R Sbjct: 871 VTVSIRVPSAEPPFGYAIAESISDHFYPSFVICQKLGIQPSTLGRITGSLLVNPGRYDIGLNMKFKKELTLAGYCR 946 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102579.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102579.223.1 >prot_H-elongata_contig102579.223.1 ID=prot_H-elongata_contig102579.223.1|Name=mRNA_H-elongata_contig102579.223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp VDVIVDLRPPEPPFGLAVVQSVKTHYFPQQRACKILMIKASVFGRVVGSVback to top mRNA from alignment at H-elongata_contig102579:1599..1829+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102579.223.1 ID=mRNA_H-elongata_contig102579.223.1|Name=mRNA_H-elongata_contig102579.223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig102579:1599..1829+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102579:1599..1829+ >mRNA_H-elongata_contig102579.223.1 ID=mRNA_H-elongata_contig102579.223.1|Name=mRNA_H-elongata_contig102579.223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig102579:1599..1829+ (Himanthalia elongata Himel1 dioecious)back to top |