mRNA_H-elongata_contig102509.220.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI) HSP 1 Score: 192 bits (487), Expect = 8.100e-55 Identity = 95/141 (67.38%), Postives = 108/141 (76.60%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEEDPVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYLKYDLPLWLTEFACGDDTSLMSASGQTSYLADALLLLELHPSVARYAW 423 QANLTP EAAA+W+TVK+EA TL A+IVSPAVNFC GDCT+EDP +WLDDFF AC GC VTAIAVH Y C+V YLNK L YLKY LP+W+TEFAC DD + M+ + Q +YLADAL LLELHPSVARYAW Sbjct: 216 QANLTPQEAAALWSTVKSEAATLGAEIVSPAVNFCGGDCTKEDPYEWLDDFFSACE----GCDVTAIAVHIYTCEVR-------YLNKILHGYLKYGLPIWITEFACADDAAYMNEASQAAYLADALTLLELHPSVARYAW 345
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI) HSP 1 Score: 160 bits (406), Expect = 4.610e-43 Identity = 78/145 (53.79%), Postives = 103/145 (71.03%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEEDPVQWLDDFFEACG-NIDGG--CGVTAIAVHTYACQVTDPTADAIYLNKHLQMYL-KYDLPLWLTEFACGDDTSLMSASGQTSYLADALLLLELHPSVARYAW 423 QANLTP EAA +W V+ +AD L ++VSPAVNFC G+C EEDP+ WLD+FFEACG +++ CG+T IA+H+Y C+V YLNKH+ MY+ +Y LP+WLTEFACG + + + A GQ +L AL LEL+P + RYAW Sbjct: 186 QANLTPQEAADLWPQVRQQADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVK-------YLNKHIHMYVQRYGLPIWLTEFACGFEATELDAYGQADFLESALTYLELNPHIFRYAW 323
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A0A6H5KQ88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ88_9PHAE) HSP 1 Score: 147 bits (371), Expect = 6.140e-39 Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEEDPVQWLDDFFEACG-NIDGG--CGVTAIAVHTYACQVTDPTADAIYLNKHLQMYL-KYDLPLWLTEFACGDDTSLMSASGQTSYLADALLLLELHPSVARY 417 QANLTP EAA +W V+ +AD L ++VSPAVNFC G+C EEDP++WLDDFFEACG +++G CG+T IA+H+Y C+V YLNKH+ MY+ +Y LP+WLTEFACG + + + A+GQ S L A PS+ Y Sbjct: 149 QANLTPQEAADLWPQVRQQADDLGMELVSPAVNFCYGNCVEEDPIKWLDDFFEACGGDVEGRDFCGITYIAIHSYTCKVK-------YLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQASVLGAA----PTRPSLGSY 280
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A0A1I2ARD7_9DELT (Glycosyl hydrolase catalytic core n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2ARD7_9DELT) HSP 1 Score: 127 bits (318), Expect = 7.670e-33 Identity = 70/141 (49.65%), Postives = 88/141 (62.41%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEEDPVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYLKYDLPLWLTEFACGDDTSLMSASGQTSYLADALLLLELHPSVARYAW 423 QA+LTP EAAA+W V+A AD +IVSPA+N+C GDC + DP +W D+FF AC GC V +AVH YAC T DA L ++ KY+ P+WLTEF+C D S + Q Y+ +AL LE PSVARYAW Sbjct: 160 QADLTPQEAAALWPQVEAVADAHGLEIVSPALNYCGGDCNKTDPFEWFDEFFAACP----GCRVDHLAVHWYAC-----TRDA--LTWYIGEMKKYERPIWLTEFSCLDAED-KSVAVQKQYMQEALEYLEAEPSVARYAW 288
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A9GMG4_SORC5 (Hypothetical serine rich protein n=1 Tax=Sorangium cellulosum (strain So ce56) TaxID=448385 RepID=A9GMG4_SORC5) HSP 1 Score: 120 bits (302), Expect = 3.520e-30 Identity = 67/142 (47.18%), Postives = 84/142 (59.15%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEEDPVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYL-KYDLPLWLTEFACGDDTSLMSASGQTSYLADALLLLELHPSVARYAW 423 QA+L+ EAAA+W V+A AD +VSPAVNFC GDC E DP ++LDDFF AC GC V I +H Y + A +L H++ Y ++D PLWLTEFAC SL Q +L DAL LE P +A+YAW Sbjct: 187 QADLSAAEAAALWPHVEAVADARGLALVSPAVNFCGGDCQETDPFKYLDDFFAACS----GCRVDYIGIHIYTGCKGEGDNQAQWLINHVETYKSRFDKPLWLTEFACDSAGSLAE---QKEFLVDALAYLENEPRIAKYAW 321
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A0A4Q5XY15_9DELT (Glyco_hydro_cc domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5XY15_9DELT) HSP 1 Score: 116 bits (290), Expect = 5.460e-29 Identity = 69/148 (46.62%), Postives = 86/148 (58.11%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEED------PVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYLKYDLPLWLTEFACGDDT-SLMSASGQTSYLADALLLLELHPSVARYAW 423 QAN TP +AAA+W ++ A +VSPAVN+C GDC ED PV +LD FF+AC GC V AIA+H YAC D L ++ + KYD PLWLTEFACGD S ++ Q Y+ DA+ LE PSV RY+W Sbjct: 116 QANKTPRQAAALWPVLEEVARRKQLKLVSPAVNYC-GDCVTEDGVKFTDPVVYLDAFFKACQ----GCQVDAIAIHWYAC-------DLGALKWYVDRFKKYDKPLWLTEFACGDRPHSEITVEVQKKYMVDAITWLETEPSVERYSW 251
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A0A1W9Q7G6_9DELT (Glyco_hydro_cc domain-containing protein n=1 Tax=Sorangiineae bacterium NIC37A_2 TaxID=1970199 RepID=A0A1W9Q7G6_9DELT) HSP 1 Score: 115 bits (287), Expect = 5.700e-29 Identity = 64/142 (45.07%), Postives = 83/142 (58.45%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEEDPVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYL-KYDLPLWLTEFACGDDTSLMSASGQTSYLADALLLLELHPSVARYAW 423 QAN++ EAA W ++ A+ +VSPAVNFC GDC + DP +LD+FFE C GC V AIA+H Y A +L H++ Y +Y LPLWLTEFAC + TSL Q ++L DA+ LE P + RYAW Sbjct: 73 QANMSAAEAALRWPELEELAEARGLKLVSPAVNFCGGDCQDTDPFHYLDEFFERCE----GCRVDAIAIHIYVGCSPPGDNKAEWLIGHVENYKSRYSLPLWLTEFACDNATSL---DEQEAFLRDAVQYLEAEPRIERYAW 207
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A0A7S1ZP05_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZP05_TRICV) HSP 1 Score: 110 bits (275), Expect = 1.940e-28 Identity = 62/132 (46.97%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDA-DIVSPAVNFCSGDCTEEDPVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYLKYDLPLWLTEFACGDDTSLMSASGQTSYLADALLLLE 393 QAN+ P AA +W ++ EA + +VSPAVNF + P+ WLD+FF C GC V AI VH+Y CQV YL+ HL MY KY LPLWLTEFAC DDT+ + A+GQ Y+ +A+ LE Sbjct: 18 QANMLPQAAADLWPELEKEAVEKNIPSLVSPAVNFAT-----YHPIAWLDEFFGNCT----GCKVDAIGVHSYTCQVE-------YLHNHLSMYYKYGLPLWLTEFACADDTTKIDAAGQAEYMKEAIPYLE 133
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A0A3A8TSN0_9DELT (Glyco_hydro_cc domain-containing protein n=24 Tax=Corallococcus TaxID=83461 RepID=A0A3A8TSN0_9DELT) HSP 1 Score: 114 bits (284), Expect = 5.150e-28 Identity = 67/148 (45.27%), Postives = 86/148 (58.11%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEED------PVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYLKYDLPLWLTEFACGDDT-SLMSASGQTSYLADALLLLELHPSVARYAW 423 QAN TP +AAA+W ++ A +VSPAVN+C GDC ED PV +LD FF+AC N C V AIA+H YAC D L ++ + KY+ PLWLTEFACGD + ++ Q Y+ DA+ LE PS+ RYAW Sbjct: 126 QANKTPRQAAALWPVLEEVARRKGLKLVSPAVNYC-GDCVTEDGVTFTDPVVYLDAFFKACAN----CQVDAIAIHWYAC-------DLSALKWYVGQFKKYNKPLWLTEFACGDRPHNEITVDVQKKYMVDAIGYLETEPSIERYAW 261
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Match: A0A4Q5ZN72_9DELT (Glyco_hydro_cc domain-containing protein n=5 Tax=Myxococcaceae TaxID=31 RepID=A0A4Q5ZN72_9DELT) HSP 1 Score: 113 bits (283), Expect = 7.370e-28 Identity = 66/149 (44.30%), Postives = 86/149 (57.72%), Query Frame = 1 Query: 1 QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEED------PVQWLDDFFEACGNIDGGCGVTAIAVHTYACQVTDPTADAIYLNKHLQMYLKYDLPLWLTEFACGD--DTSLMSASGQTSYLADALLLLELHPSVARYAW 423 QAN TP +AAA+W ++ A +VSPAVN+C GDC ED PV +LD FF+AC N C V AIA+H YAC D L ++ + KY+ PLWLTEFACGD + ++ Q Y+ DA+ LE P++ RYAW Sbjct: 126 QANKTPRQAAALWPVLEEVARRKGLKLVSPAVNYC-GDCVSEDGVTFTDPVVYLDAFFKACAN----CQVDAIAIHWYAC-------DLSALKWYVGQFKKYNKPLWLTEFACGDLKPPTSITVDVQKKYMVDAIGYLETEPAIERYAW 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102509.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102509.220.1 >prot_H-elongata_contig102509.220.1 ID=prot_H-elongata_contig102509.220.1|Name=mRNA_H-elongata_contig102509.220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp QANLTPLEAAAVWATVKAEADTLDADIVSPAVNFCSGDCTEEDPVQWLDDback to top mRNA from alignment at H-elongata_contig102509:1210..2144+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102509.220.1 ID=mRNA_H-elongata_contig102509.220.1|Name=mRNA_H-elongata_contig102509.220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=935bp|location=Sequence derived from alignment at H-elongata_contig102509:1210..2144+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102509:1210..2144+ >mRNA_H-elongata_contig102509.220.1 ID=mRNA_H-elongata_contig102509.220.1|Name=mRNA_H-elongata_contig102509.220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig102509:1210..2144+ (Himanthalia elongata Himel1 dioecious)back to top |