mRNA_H-elongata_contig102468.217.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE) HSP 1 Score: 195 bits (496), Expect = 3.280e-57 Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 1 Query: 10 TVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 T RGGGYGLDAELA +REANYD AQEWIE +T E FA+ FGEEL++GR+LC+LIN IKPGAVRRVNDSRMPFKQMEN+SNFLKACRAVGVAEHSLFETVDL+EGKDLGLVVRCL Sbjct: 339 TGGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCL 458
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI) HSP 1 Score: 176 bits (447), Expect = 2.390e-52 Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 1 Query: 16 ARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 ARG GYGLDAELA +REA YDH AE A+ WIE +T E FG+ LR+G +C L+N IKPGAVR++N+SRMPFKQMENISNFLK+CRA+GVAEHSLFETVDL+EGKD+GLVVRC+ Sbjct: 6 ARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCI 123
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.490e-48 Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 1 Query: 13 VARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 V RGGGYGLDAELA K A YD E+ AQEW+E +T F F L++G LC LINAIKPG ++R+N S+MPFKQMENISNFLKACR +GVAE+SLFETVDLFE KD+GLV+RCL Sbjct: 2 VGRGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCL 120
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.570e-47 Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = 1 Query: 16 ARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 ARGGGYGLDAELA K ANYD+ E AQEWIE +TR F F L++G LC L+NAI+PG V+++N S MPFKQMENIS +LK CRA+GVAEHSLFETVDL+E KD+ LV++CL Sbjct: 4 ARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCL 121
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A7R9YD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD67_9STRA) HSP 1 Score: 157 bits (396), Expect = 7.490e-44 Identity = 78/123 (63.41%), Postives = 98/123 (79.67%), Query Frame = 1 Query: 1 APVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 APV+ ARGGGYGLDA+LA+ R YD+ E + +EWIE +T E F FGE L++GR LC LINAIKPG++R +N S++PFKQMEN+S FL+ CRA+GVAEH LFETVDL+E KDLG+VV C+ Sbjct: 285 APVS-ARGGGYGLDAQLAQIRLDKYDYDLEAEVKEWIEAVTGEAFPGGFGESLKDGRILCKLINAIKPGSIRIINTSKLPFKQMENVSVFLRNCRALGVAEHDLFETVDLYELKDLGVVVNCI 406
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A2D4CAP3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN) HSP 1 Score: 142 bits (357), Expect = 2.500e-38 Identity = 72/119 (60.50%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 16 ARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVND-SRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 ARGGGYGLDAELA++ YD+ E +A++WIE +T FGE LR+G LC L N I PG +RR+ S+MPFK MEN+S FLKACR +GV E+ LFETVDLFE K LGLVVRCL Sbjct: 8 ARGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCL 126
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A024G6R3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6R3_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.400e-37 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 1 Query: 19 RGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVN-DSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 RGGGYGLDAELA++ YD+ E+DAQ+W+E +T D FGE L++G LC L+N I PG V R+ S++ F+ MEN+SNFLKACR +GV+E LFETVDLFE KDLGLVVRCL Sbjct: 9 RGGGYGLDAELAQRATERYDYGMEKDAQDWVESITGLQIGDSFGEGLKDGVILCNLVNKIHPGIVPRIEVKSKIKFRLMENVSNFLKACRTIGVSEFDLFETVDLFELKDLGLVVRCL 126
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A8K1CMC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMC3_PYTOL) HSP 1 Score: 142 bits (359), Expect = 3.900e-37 Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 1 Query: 4 PVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVND-SRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 PV V RGGGYGLDAELA++ YD+ E +A+ W+E +T D+FGE LR+G LC L+N I PG V+RV S+MPFK MEN+S FL+ACRA+GV E LFETVDLFE KDLGLVVRC+ Sbjct: 4 PVKV-RGGGYGLDAELAKRAAERYDYDLEDEARYWVEEITGMEIGDDFGEGLRDGVILCELVNKIHPGVVKRVETKSKMPFKLMENVSGFLRACRAMGVNEFELFETVDLFELKDLGLVVRCI 125
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A7S1U3T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3T7_9STRA) HSP 1 Score: 134 bits (338), Expect = 6.140e-37 Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 1 Query: 97 AQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVNDSRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 AQ+WIE LT E F FGE L++GR LC+ INAIKPG +RRVN S++PFKQMEN+S FL++CR +GVAEH LFETVDL+E KDLGLVV+C+ Sbjct: 2 AQQWIEELTGEAFPGGFGESLKDGRLLCLTINAIKPGTIRRVNASKLPFKQMENVSTFLRSCRTLGVAEHDLFETVDLYELKDLGLVVQCI 92
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Match: A0A5D6XYZ9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYZ9_9STRA) HSP 1 Score: 140 bits (352), Expect = 8.960e-37 Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 1 Query: 4 PVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGEELRNGRRLCMLINAIKPGAVRRVND-SRMPFKQMENISNFLKACRAVGVAEHSLFETVDLFEGKDLGLVVRCL 369 P RGGGYGLDAELA + YD+ E +A++WIE + + ++FGE LR+G LC L+NAI PG V RV S+MPFK MEN+S FL+ACR +GV E LFETVDLFE KDLG VVRC+ Sbjct: 4 PPVQTRGGGYGLDAELARRAAERYDYEMEDEARDWIEAVAHKDIGEDFGEGLRDGVVLCALVNAIHPGIVPRVETKSKMPFKLMENVSAFLRACRKIGVNEFDLFETVDLFELKDLGHVVRCI 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102468.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102468.217.1 >prot_H-elongata_contig102468.217.1 ID=prot_H-elongata_contig102468.217.1|Name=mRNA_H-elongata_contig102468.217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp APVTVARGGGYGLDAELAEKREANYDHRAEQDAQEWIEVLTREPFADEFGback to top mRNA from alignment at H-elongata_contig102468:93..464- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102468.217.1 ID=mRNA_H-elongata_contig102468.217.1|Name=mRNA_H-elongata_contig102468.217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig102468:93..464- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102468:93..464- >mRNA_H-elongata_contig102468.217.1 ID=mRNA_H-elongata_contig102468.217.1|Name=mRNA_H-elongata_contig102468.217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig102468:93..464- (Himanthalia elongata Himel1 dioecious)back to top |