mRNA_H-elongata_contig102428.213.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE) HSP 1 Score: 157 bits (396), Expect = 6.440e-43 Identity = 85/176 (48.30%), Postives = 110/176 (62.50%), Query Frame = 1 Query: 7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 TGL+V+ A+R+K A +A + L Y+ + S C L + PG+VA VE+ G F+ +FVMLGRAAHA +SP+K + +D GHLKGEW G+ML TCKDANN +HVATVI KED+ YK L KKN +M +L SK+T TDQH L A + R+CL HLI Sbjct: 115 TGLRVSYSAASRLKVAATRASKEQLEHGYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLGRAAHAAVRSPIKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLI 290
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5KNP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP1_9PHAE) HSP 1 Score: 143 bits (361), Expect = 6.420e-40 Identity = 79/174 (45.40%), Postives = 107/174 (61.49%), Query Frame = 1 Query: 10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHL 531 G K R+ R K A A QAA AGS QQ P C L + SPG+VA VE++ DG+FKR+ +++ RAA A+ KF+ VD GH+KG WKG++L+A KD NN LV VA VICDKE+S NY++L+ MKKN ++ L S +TI +D++ + A + R C HL Sbjct: 15 GHKADGRSVRRYKKNAVDALQAAAAGSIQQAPGYCRELVKMSPGSVANVERHPDGSFKRIAIVVNRAALVIARGLFKFLQVDGGHMKGTWKGMVLVAAGKDTNNNLVLVAFVICDKENSTNYEFLFSEMKKNVHLKAPLESPLTTIYSDENNGIKSAIEIEASDIIHRLCCKHL 188
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.900e-39 Identity = 83/176 (47.16%), Postives = 111/176 (63.07%), Query Frame = 1 Query: 7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 TGL+V+ TA+R+K AK+A + L Y+ + S C L + PG VA V++ G F +FVMLGRAA A +SP+K + +D GHLKGEW G+ML TCKDA+N +++VATVI KED+ YK L R KN +M +L SK+T TDQH L + A + R+CL HLI Sbjct: 157 TGLRVSYSTASRLKVAAKRASKEQLEHGYRIMDSYCKELVKDCPGPVAVVQRETTGRFPSVFVMLGRAARAAVRSPVKVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLL-RNCKNPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLI 331
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.320e-39 Identity = 83/176 (47.16%), Postives = 106/176 (60.23%), Query Frame = 1 Query: 7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 TGL+V+ TA+R+K A +A L Y+ + S C L + PG+VA VE+ G F+ +FVML RAAHA +SP+K + +D GHLKGEW G+ML TCKDANN +HVA VI KED+ Y L KKN +M +L SK+T TDQH L A + R CL HLI Sbjct: 118 TGLRVSYSTASRLKVAAARASNEQLEHGYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLRRAAHAAVRSPMKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLI 293
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE) HSP 1 Score: 135 bits (339), Expect = 5.760e-35 Identity = 82/205 (40.00%), Postives = 103/205 (50.24%), Query Frame = 1 Query: 7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLV-----------------------------HVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 TG+ VA RTA RMK A+ +A A YQ L S C LLQQ+ PG+VAE + +CVD+GHLKG+W G+ML+AT KDA+ LV HVAT ICDKE++ NY W Y MK N +M VLNS K+T+ TD+H SH P ++ A N R+CL H I Sbjct: 14 TGINVAHRTANRMKMTARDGDKATTAAGYQLLGSFCDLLQQQCPGSVAETQ---------------------------VLCVDAGHLKGDWNGMMLVATSKDADTKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHI 191
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.050e-29 Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = 1 Query: 7 TGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 TGL+V+ A+R+K A +A + L Y+ + S F+R+ +MLGRAA A +SP+K + D GHLKGEW G++L TCKDANN ++HVATVI KED+ YK L KKN +M +L SK+ TDQH L A + R+CL H+I Sbjct: 115 TGLRVSYSAASRLKVAATRASKEQLEHGYRIMDS-----------------------FRRVILMLGRAARAAVRSPMKVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHII 267
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5JC04_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC04_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.080e-28 Identity = 67/174 (38.51%), Postives = 98/174 (56.32%), Query Frame = 1 Query: 10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHL 531 G V+DR + R K A + AG+ +LPSL +++ PG+VA VE + D F R F+MLG+AA+ A S + +D+GHLKG WKGVM + D+NN ++HV+TV+ DKE++ NYK+L + +N M +L+S + T D H L R C+ HL Sbjct: 173 GFTVSDRQSQRAKKRIATASKEDEAGAISRLPSLFEGIERDCPGSVATVEVSPDNRFVRSFLMLGKAAYVAAHS---MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVLPQAPWRACVRHL 343
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.430e-28 Identity = 68/175 (38.86%), Postives = 98/175 (56.00%), Query Frame = 1 Query: 10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 G V+DR + R K A + AG+ +LPSL +++ PG+VA VE + D F R F+MLG+AA+ A S + +D+GHLKG WKGVM + D+NN ++HV TV+ DKE++ NYK+L + +N M +L+S + T D H L R C+ HLI Sbjct: 5 GFTVSDRQSQRAKKRIATASKEDEAGAISRLPSLFEGIERDCPGSVATVEVSPDNRFVRSFLMLGKAAYVAAHS---MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVTTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFVIDGHKGSPAALRAVVPQAPWRACVRHLI 176
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.280e-27 Identity = 64/175 (36.57%), Postives = 98/175 (56.00%), Query Frame = 1 Query: 10 GLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAEVEKNEDGTFKRLFVMLGRAAHACAQSPLKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 G V+DR + R K A + A + +LPSL +++ PG++A VE + D F R F+MLG+AA+ A S K + +D+GHLKG W GVM + D+NN ++HV+TV+ DKE++ NY++L + +N M+ +L+S + T D H L R C+ H I Sbjct: 84 GFTVSDRQSQRAKKRIATATKGDGAAALSRLPSLFQGIERDCPGSIATVEMSPDNRFVRSFLMLGKAAYVAAHSVPKIVAMDAGHLKGSWHGVMYVLCMHDSNNKIIHVSTVLADKENATNYEFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALRAVLPQAPWRACVRHFI 258
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.660e-24 Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 235 LKFICVDSGHLKGEWKGVMLLATCKDANNTLVHVATVICDKEDSGNYKWLYGRMKKNAEMETVLNSSKSTICTDQHASHGPVLSQFAKNCRRRFCLVHLI 534 L + +D GHLKGEW G+ML TCKDANN ++HVATVI KED+ YK L KKN +M +L SK+T TDQH L A + R+CL HLI Sbjct: 7 LVVVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLI 106 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102428.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102428.213.1 >prot_H-elongata_contig102428.213.1 ID=prot_H-elongata_contig102428.213.1|Name=mRNA_H-elongata_contig102428.213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp ERTGLKVADRTATRMKNVAKKAHQAALAGSYQQLPSLCSLLQQRSPGTVAback to top mRNA from alignment at H-elongata_contig102428:151..2289+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102428.213.1 ID=mRNA_H-elongata_contig102428.213.1|Name=mRNA_H-elongata_contig102428.213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2139bp|location=Sequence derived from alignment at H-elongata_contig102428:151..2289+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102428:151..2289+ >mRNA_H-elongata_contig102428.213.1 ID=mRNA_H-elongata_contig102428.213.1|Name=mRNA_H-elongata_contig102428.213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig102428:151..2289+ (Himanthalia elongata Himel1 dioecious)back to top |