mRNA_H-elongata_contig10240.211.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: D7G6Z3_ECTSI (DNA ligase IV n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z3_ECTSI) HSP 1 Score: 287 bits (735), Expect = 6.810e-87 Identity = 146/240 (60.83%), Postives = 181/240 (75.42%), Query Frame = 1 Query: 1 LDNLRDKYGVKTMKLAKLIAQMYFPD-RSSKQYQQLVLHTDPVKNPSPA-KEWQITGDFPLTLQYILQTSA-SLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSVRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSER 711 LDNLRDKYG++T K+A L A +YFP+ + + Y +L +TDP +N SP K WQ+TGD LTL+Y+L S + V+ TTWT+ VN L DLA A +D R +VL RIR +CS +NQKWI R+ILKNLKI +KK+ VLKK HP AL+ Y+RTTSLR+VCS FIG H+SV +LEVFT+FSPMLA N FY + KIVP + GRPFCMDVKLDGERMLCH EG K+KWFTRNAKDY+++ Sbjct: 79 LDNLRDKYGMRTAKMASLFADLYFPNNKKGEGYLRLQSYTDPDRNSSPGDKRWQVTGDLALTLEYVLTESRFGIKAVDATTWTIRDVNDALSDLANAPNDQRRKQVLTRIRTNCSPMNQKWIARMILKNLKINIKKE-VLKKFHPGALDYYNRTTSLRRVCSAFIGKHSSVTATFNLEVFTTFSPMLAMNFFYGLGKIVPSLQGRPFCMDVKLDGERMLCHREGNKVKWFTRNAKDYTDK 317
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: W7TM40_9STRA (Dna ligase 4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM40_9STRA) HSP 1 Score: 139 bits (350), Expect = 9.920e-36 Identity = 84/242 (34.71%), Postives = 140/242 (57.85%), Query Frame = 1 Query: 1 LDNLRDKYGVKTMKLAKLIAQMYFPD-RSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTLQY--ILQTSASLHVVEKTTW-TLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSV-RLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSER 711 +D R Y +K LAKL ++ D R S+ Q+L+ + + P P++E T P T + +L+ + V ++ + TL ++++ LD L RA R VL RI + SA QKW++RIIL+++KI L+++ +L H A+ ++ T LR VCS + R +++ F+PMLA L + + K+ P M G PF +++K+DGERMLCH +GG+++WF+R+A DY+++ Sbjct: 93 IDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRY----RQPRPSRELDSTPKRPCTFDWPEVLEDILATRVTQQASRATLGEISEVLDQLTRATEHRSRQTVLNRILLWLSAKEQKWLVRIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDK 330
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A4D9CSH9_9STRA (DNA_LIGASE_A3 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH9_9STRA) HSP 1 Score: 137 bits (345), Expect = 7.300e-34 Identity = 87/242 (35.95%), Postives = 135/242 (55.79%), Query Frame = 1 Query: 1 LDNLRDKYGVKTMKLAKLIAQMYFPD-RSSKQYQQLVLHTDPVKN---PSPAKEWQITGDFPLTLQYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSV-RLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSER 711 +D R Y +K LAKL ++ D R S+ Q+L+ + P SP K T D+P L+ +L T + T L ++N+ LD L RA R VL RI + SA QKW+ RIIL+++KI L+++ +L H A+ ++ T LR VCS + R +++ F+PMLA L + + K+ P M G PF +++K+DGERMLCH +GG+++WF+R+A DY+++ Sbjct: 93 IDTTRKNYSIKQAGLAKLYVEILGLDPRHSRDAQKLLRYRQPPPPRALDSPPKR-PCTFDWPDVLEDVLATRVTQQASRAT---LGELNEVLDQLTRATEHQSRQTVLNRILLWLSAKEQKWLARIILQDMKIGLREEQILGFYHAQAMSLWNATCDLRYVCSALTDSSRQIDRDALGVQLHRPFAPMLATMLHHQLYKVEPAMHGHPFAVEMKIDGERMLCHKDGGQVEWFSRSATDYTDK 330
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: H3HDA1_PHYRM (DNA ligase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDA1_PHYRM) HSP 1 Score: 128 bits (321), Expect = 3.380e-30 Identity = 86/230 (37.39%), Postives = 131/230 (56.96%), Query Frame = 1 Query: 22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNSVRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708 Y +K K+AK+ Q+ +SK Q+L DP S + GDF L + +L SA ++ TL+ VN LD L R+ S+T R +V + + SA QKWI+R++LK+LKI L+ + VLK IHPDA+E Y+ T L KVC+ +++VR L+ F F+PMLA + N + + + G F M+ KLDGER+ CH+ G ++++ +RN +Y+E Sbjct: 69 YMLKEKKIAKIYVQVLGLSSASKDAQKLEHFNDPKIVDSKS-----VGDFAAVLYEVVLYRSAVSKSRQQ--HTLKDVNDLLDALVRSDSNTGRKKVFMTLATEYSADEQKWIIRVVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCTDL--KNSAVRYVPQLQPFQVFTPMLAKRV--NFGECISAINGDTFVMEPKLDGERITCHVRGEEVQFISRNGINYTE 287
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A662X6F6_9STRA (DNA ligase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6F6_9STRA) HSP 1 Score: 127 bits (319), Expect = 6.670e-30 Identity = 84/230 (36.52%), Postives = 128/230 (55.65%), Query Frame = 1 Query: 22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTLQYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708 Y +K K+AK+ + +SK Q+L DP E + GDF L +L+ SL K TL+ VN+ LD L RA S+ R +++ R+ + A QKW++R++LK+LK+ L+ + VL +HPDA+E Y+ T L KVC+ L NS VR LE F FSPMLA + + + + F M+ KLDGER+ CH++G ++++ +RN +Y+E Sbjct: 85 YNLKEKKIAKIYVDVLGMSSASKDAQKLEHFNDP-----KVVESKSVGDFAAVLYEVLR-YRSLAGNTKREHTLQDVNELLDALVRADSNASRKKMVMRLATEFPANEQKWVVRVVLKDLKVGLRHERVLNFLHPDAMEMYNHTNDLHKVCTD---LRNSAVRYVPQLEPFQVFSPMLAKRVGFG--ECTTAINADAFVMEPKLDGERITCHVQGKQVQFISRNGINYTE 303
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A2P4YC19_9STRA (DNA ligase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC19_9STRA) HSP 1 Score: 127 bits (318), Expect = 9.010e-30 Identity = 87/231 (37.66%), Postives = 127/231 (54.98%), Query Frame = 1 Query: 22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708 Y +K K+AK+ + SK Q+L DP E + GDF L +L SA K TL+ VN+ LD L +A S+ R +V ++ + SA QKWI+R++LK+LKI L+ + VL+ IHPDA+E Y+ T L KVC L NS VR LE F F+PMLA + N + + + F M+ KLDGER+ CH++G ++++ +RN +Y+E Sbjct: 95 YMLKEKKIAKIYIDVLGLAPISKDAQKLEHFNDP-----KIVESKSVGDFAAVLFDVVLYQSA--RTTSKQQHTLQDVNELLDQLVQADSNAARKKVFMKLATEYSADEQKWIIRVVLKDLKIGLRHERVLQFIHPDAMEMYNHTNDLHKVCRE---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVMEPKLDGERITCHVQGNEVQFISRNGINYTE 313
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: G4YG23_PHYSP (DNA ligase n=3 Tax=Phytophthora TaxID=4783 RepID=G4YG23_PHYSP) HSP 1 Score: 127 bits (318), Expect = 9.010e-30 Identity = 86/230 (37.39%), Postives = 128/230 (55.65%), Query Frame = 1 Query: 22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTLQYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708 Y +K K+AK+ Q+ +SK Q+L DP S + GDF L Y + S + TL+ VN LD L +A ++ R +V+ ++ + SA QKWI+R++LK+LKI L+ + VLK IHPDA+E Y+ T L KVC L NS VR LE F F+PMLA + N + + + F M+ KLDGER+ CH++G ++++ +RN +Y+E Sbjct: 65 YMLKEKKIAKIYVQVLGLSPASKDAQKLEHFHDPKIVDSKS-----VGDFAAVL-YEVMLYRSTASKSRQQHTLKDVNALLDSLVQADNNATRKKVIMKLATEYSADEQKWIIRVVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCRE---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTE 283
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: D0MXT4_PHYIT (DNA ligase n=12 Tax=Phytophthora TaxID=4783 RepID=D0MXT4_PHYIT) HSP 1 Score: 127 bits (318), Expect = 9.010e-30 Identity = 90/231 (38.96%), Postives = 127/231 (54.98%), Query Frame = 1 Query: 22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708 Y +K K+AK+ + SK Q+L DP S + GDF L +L SA KT TLE VN LD L +A ++ R +V ++ + SA QKWI+R+ILK+LKI L+ + VLK IHPDA+E Y+ T L KVC L NS VR LE F F+PMLA + N + + + F M+ KLDGER+ CH++G ++++ +RN +Y+E Sbjct: 73 YMLKEKKIAKIYIDVLGLAPISKDAQKLEHFNDPKIVDSKS-----VGDFAAVLFDVVLYQSA--RTKSKTHHTLEDVNTLLDRLVQADNNAARKKVFMKLATEYSADEQKWIIRVILKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCKE---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTE 291
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: M4B6V2_HYAAE (DNA ligase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6V2_HYAAE) HSP 1 Score: 125 bits (314), Expect = 3.080e-29 Identity = 87/231 (37.66%), Postives = 130/231 (56.28%), Query Frame = 1 Query: 22 YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708 Y +K K+AKL Q+ SK Q+L DP S + GDF L + +L S + + K T++ VN+ LD L +A S+ R V ++ + +A QKWI+RI+LK+LKI L+ + VLK IHPDA+E Y+ T L KVC+ L NS VR LE F F+PMLA + N + + + F ++ KLDGER+ CH++G ++++ +RN +Y+E Sbjct: 69 YLLKEKKIAKLYIQVLGLAPISKDAQKLEHFNDPKIADSKS-----VGDFAAVLYEVVLYRSGASKLKPK--HTIQDVNELLDTLVQADSNAARKNVFMKLATEYAAEEQKWIIRIVLKDLKIGLRHERVLKFIHPDAMEMYNHTNDLHKVCTD---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINADAFVVEPKLDGERITCHVQGEEVQFISRNGINYTE 287
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Match: A0A3M6VJB0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJB0_9STRA) HSP 1 Score: 122 bits (305), Expect = 3.420e-29 Identity = 86/235 (36.60%), Postives = 134/235 (57.02%), Query Frame = 1 Query: 13 RDK-YGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEWQITGDFPLTL-QYILQTSASLHVVEKTTWTLEQVNKTLDDLARAGSDTVRAEVLRRIRVDCSAINQKWIMRIILKNLKIKLKKDSVLKKIHPDALEEYSRTTSLRKVCSTFIGLHNS-VRLKSSLEVFTSFSPMLAANLFYNMDKIVPRMMGRPFCMDVKLDGERMLCHLEGGKIKWFTRNAKDYSE 708 RD+ Y +K K+AK+ Q+ SK Q+L DP S + GDF L + +L S + K T++ VN+ L+ L +A S+T R +V ++ + +A QKWI+R++LK+LKI L+ + VL+ IHPDA+E Y+ T L KVC+ L NS VR LE F F+PMLA + N + + + F ++ KLDGER+ CH++G ++++ +RN +Y+E Sbjct: 67 RDRTYMLKEKKIAKIYIQVLGLAPISKDAQKLEHFNDPKIVDSKS-----VGDFAAVLYEVVLYRSGTSK--SKLKHTIQDVNELLNYLVQADSNTARKKVFMKLATEYTAEEQKWIIRVVLKDLKIGLRHERVLQFIHPDAMEMYNHTNDLHKVCTD---LRNSAVRYVPQLEPFQVFTPMLAKRV--NFGECISAINDDVFVVEPKLDGERITCHVKGKEVQYISRNGTNYTE 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10240.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10240.211.1 >prot_H-elongata_contig10240.211.1 ID=prot_H-elongata_contig10240.211.1|Name=mRNA_H-elongata_contig10240.211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp LDNLRDKYGVKTMKLAKLIAQMYFPDRSSKQYQQLVLHTDPVKNPSPAKEback to top mRNA from alignment at H-elongata_contig10240:3664..7599+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10240.211.1 ID=mRNA_H-elongata_contig10240.211.1|Name=mRNA_H-elongata_contig10240.211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3936bp|location=Sequence derived from alignment at H-elongata_contig10240:3664..7599+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10240:3664..7599+ >mRNA_H-elongata_contig10240.211.1 ID=mRNA_H-elongata_contig10240.211.1|Name=mRNA_H-elongata_contig10240.211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig10240:3664..7599+ (Himanthalia elongata Himel1 dioecious)back to top |