mRNA_H-elongata_contig102377.208.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 6.520e-145 Identity = 216/254 (85.04%), Postives = 233/254 (91.73%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S AGVTGAR+ +P+DLK FVGRVRAATDKPLS FGISS EQV+EVA +ADGVVVGS FM AVDE+ DAPASEIAAHL KFT LKAG+ ++EMSF HTG++GL+Y+GKDVSGGYFGDFGGRYIPE LVEAHRELEEAYEAAK DPAFHEE+AWYRREYIGGPTPMYHAK L+E MGGAQIWLKREEL+HTGAHKINNAVGQALLAKRIGK RIIAETGAGQHGVATATVCALLGMEC+IYMGAVDCERQKLN Sbjct: 237 SVAGVTGARSGLPADLKDFVGRVRAATDKPLSVGFGISSKEQVQEVAGIADGVVVGSAFMNAVDEVDADAPASEIAAHLKKFTEGLKAGITSAEMSFEHTGEQGLAYEGKDVSGGYFGDFGGRYIPETLVEAHRELEEAYEAAKADPAFHEEVAWYRREYIGGPTPMYHAKRLTEEMGGAQIWLKREELSHTGAHKINNAVGQALLAKRIGKNRIIAETGAGQHGVATATVCALLGMECIIYMGAVDCERQKLN 490
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A835YTN0_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN0_9STRA) HSP 1 Score: 359 bits (922), Expect = 1.680e-116 Identity = 180/256 (70.31%), Postives = 205/256 (80.08%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLS--YQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTGART +P DLK+FV R+R+ TDKPL+ FGIS E V VA++ADGVV GS M A+D+++PDA +++ AH+ FT L G+ +MS+ HTG E S Y D+ YFG FGGRYIPE LVEAHRELE+AY A+ DP FHEEIAWYR+EYIGGPT MYHAK LSE +GGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMEC++YMG VDCERQKLN Sbjct: 253 SVTGVTGARTGLPDDLKQFVARIRSKTDKPLAVGFGISQPEHVNGVAELADGVVCGSAIMNAIDKISPDASSADKRAHIKAFTQSLTQGLKDGQMSYTHTGAEETSDAYAAADMKAAYFGAFGGRYIPETLVEAHRELEQAYAEAQADPKFHEEIAWYRKEYIGGPTVMYHAKRLSEQLGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECIVYMGEVDCERQKLN 508
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: H6WB94_VAULI (Tryptophan synthase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB94_VAULI) HSP 1 Score: 340 bits (873), Expect = 2.200e-110 Identity = 167/256 (65.23%), Postives = 202/256 (78.91%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEG--LSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTGART +P++LK+F+ R+R TDKP++ FGIS V++V+++ADG V GS M +D ++ +A ++ H+ KFTA L ++ ++++ HTG E Y+ D+ YFGD+GGR+IPE LVEAHRELE+AYE A DP FHEE+ WYR+EYIGGPT MYHAK LSE MGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMEC++YMG VDCERQKLN Sbjct: 144 SVTGVTGARTGLPANLKEFIARIRTKTDKPIAVGFGISESSHVEQVSEIADGAVCGSAIMNHLDTISSEASPADKREHIKKFTANLTKDLNEGKLTYKHTGTENPYAEYKNADMRSAYFGDYGGRFIPETLVEAHRELEQAYEEALADPKFHEEVDWYRKEYIGGPTVMYHAKRLSEKMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECIVYMGEVDCERQKLN 399
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: W7TQB9_9STRA (Tryptophan synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQB9_9STRA) HSP 1 Score: 325 bits (833), Expect = 2.150e-103 Identity = 169/261 (64.75%), Postives = 197/261 (75.48%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGV-------DASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTG+R+ +P DLK FV R+RA TDK L+ FGIS+ V +VA +ADGVVVGS + A+D P + AA + F A LK G DA ++ G + +DVS +FG+FGGRYIPE LVEAHRELEEAYEAA DPAF EE+A+YR++YIGGPTPMYHAK L+EA+GGAQIWLKREELAHTGAHKINNAVGQALLAKR+GK+RIIAETGAGQHGVATATVCAL+ MEC+IYMGA DCERQ LN Sbjct: 232 SLTGVTGSRSDVPVDLKDFVARIRAVTDKNLAVGFGISTPTHVAQVAALADGVVVGSAILHAIDSAGPQSDTQARAAKVQAFIAELKGGAQKPGAAGDAGRVTHNGEGNGKAVAEDRDVSHRHFGEFGGRYIPETLVEAHRELEEAYEAALKDPAFQEEVAFYRKQYIGGPTPMYHAKRLTEAVGGAQIWLKREELAHTGAHKINNAVGQALLAKRLGKQRIIAETGAGQHGVATATVCALMDMECIIYMGAADCERQALN 492
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7S2UWZ9_9STRA (Tryptophan synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWZ9_9STRA) HSP 1 Score: 305 bits (780), Expect = 8.410e-98 Identity = 155/254 (61.02%), Postives = 193/254 (75.98%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTG+RT +P+DL F+ R+R TD PL+ FGIS + VK V+ ADG+VVGS M +D + DAP ++ A + F +K SE +F G++ ++Q + SG +FG+FGGRYIPE L+EAHRELEE YE AK DP F +EI +YRR++IGGPTP+Y A+ L++A+GGAQIWLKREELAHTGAHKINNAVGQA+LAKRIGK RIIAETGAGQHGVATATVCA G++C++YMGAVDCERQ LN Sbjct: 232 SLTGVTGSRTELPADLSDFLARIRKQTDLPLAVGFGISKPDHVKTVSANADGIVVGSAIMNTIDTVDADAPTADKCAAVKVFVESMKEARVPSE-NFQAGGEKKGAFQSPETSGSHFGEFGGRYIPETLIEAHRELEEEYEKAKVDPEFIKEIDFYRRQFIGGPTPLYFAERLTKAVGGAQIWLKREELAHTGAHKINNAVGQAILAKRIGKDRIIAETGAGQHGVATATVCAHFGLKCIVYMGAVDCERQALN 484
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI) HSP 1 Score: 291 bits (746), Expect = 4.170e-91 Identity = 157/255 (61.57%), Postives = 178/255 (69.80%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVS-GGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTGAR +P L+KF+ RVR AT KPLS FGISS EQV+ VA +ADGVVVGS FM A+DE AS M + + K V GG G FGG YIPE LVEAHR LEEAY AAK DP F EE+AWYRREYIGGPTP++HAK LSE MGG QIWLKREE+AHTGA +INNA+ QALLAKR+GK R++A TG+GQHGVATAT CALLGMEC ++MGAVDC+RQKLN Sbjct: 209 SVTGVTGARAHLPIGLEKFIRRVRRATGKPLSVGFGISSTEQVQAVAGIADGVVVGSAFMNAIDE--------------------------ASRMR--------IEGERKAVPPGGNIGAFGGCYIPETLVEAHRGLEEAYAAAKADPCFREELAWYRREYIGGPTPLHHAKSLSEEMGGGQIWLKREEMAHTGAQEINNAMAQALLAKRVGKTRVVAATGSGQHGVATATACALLGMECTVFMGAVDCQRQKLN 429
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A8J5XVG6_DIALT (Tryptophan synthase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVG6_DIALT) HSP 1 Score: 292 bits (747), Expect = 5.090e-91 Identity = 158/261 (60.54%), Postives = 182/261 (69.73%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKF-------TAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTGAR +P +L +F+ RVRA ++ PL+ FGI++ V E+A ADGVVVGS KAV+ + A A + TA KA +E ++ + +FG+FGGRYIPE LVEAHRELEEAY+ AK DPAFH E+A YR YIGGPTPMYHAK LS MGGAQIWLKREELAHTGAHKINNAVGQALLAKR+GKKRIIAETGAGQHGVATATVCALLG+ECV+YMGA D RQ LN Sbjct: 182 SLTGVTGARAELPKELPQFIKRVRANSNVPLAVGFGIATRAHVAEIATFADGVVVGSAVCKAVENVKDVADIRPTLAAFVQSLLPDSAQTATAKAARPGAENEEGALAQQNAKIDESVKAAAHFGEFGGRYIPETLVEAHRELEEAYDKAKKDPAFHAEVAEYRARYIGGPTPMYHAKRLSAEMGGAQIWLKREELAHTGAHKINNAVGQALLAKRLGKKRIIAETGAGQHGVATATVCALLGIECVVYMGAEDVRRQSLN 442
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7S0XDP8_9STRA (Tryptophan synthase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDP8_9STRA) HSP 1 Score: 293 bits (749), Expect = 5.620e-91 Identity = 152/258 (58.91%), Postives = 185/258 (71.71%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVD----ASEMSFVHTGKEGLSYQGKDVSGGYFGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTGAR +PSDLK+FV R+R ++D PL+ FGIS+ E V +V+++A+GVV+GS + +D P E A L F + L + A + HT +D+S FG+FGGRYIPE L+EAHRELE AY +A DP FHEEIA+YRRE+ GGPTP+Y A+ L++ MGGA IW KREELAHTGAHKINNAVGQALLAKR+GK+RIIAETGAGQHGVATA VCA G++C IYMGAVDCERQ LN Sbjct: 236 SVTGVTGARGELPSDLKEFVNRIRKSSDVPLAVGFGISTPEHVHQVSEIAEGVVLGSAIISTIDSALDKTP-KERAKTLEDFISTLSVALTKRETAKDTENFHTDNSAPKPIHRDISNRNFGEFGGRYIPETLIEAHRELEAAYASAIADPKFHEEIAFYRREFTGGPTPLYFAENLTKKMGGADIWFKREELAHTGAHKINNAVGQALLAKRLGKRRIIAETGAGQHGVATAAVCAHFGLDCTIYMGAVDCERQALN 492
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7R9Y8B0_9STRA (Tryptophan synthase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8B0_9STRA) HSP 1 Score: 286 bits (732), Expect = 9.900e-90 Identity = 159/259 (61.39%), Postives = 187/259 (72.20%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEG-LSYQGKDVSGGY----FGDFGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S G+TG DL+ FVGRVR TDKPL+ FGI + EQV EV+ +ADGVVVGS V+ ++ D +E AA+L +F A LK+GV V GK G LS + Y FGDFGGRYIPE L+ AH ELE AY+ A DPAF EEI +YRRE+IGGPTP+Y AK L+E GGA+IWLKREELAHTGAHKINNAVGQALLAKR+GKKRIIAETGAGQHGVA+A VCALL ++ +YMGAVDC+RQ+LN Sbjct: 94 SVTGITGGAGATAEDLQAFVGRVRKFTDKPLAVGFGIKTPEQVAEVSQIADGVVVGSAI---VNSVSLDKSLAENAAYLEEFCASLKSGVQERSEENV-AGKSGPLSEADAETLATYGDSHFGDFGGRYIPETLLRAHMELEAAYKEAMEDPAFKEEIDFYRREFIGGPTPLYLAKRLTEKCGGARIWLKREELAHTGAHKINNAVGQALLAKRLGKKRIIAETGAGQHGVASACVCALLDLDLTVYMGAVDCDRQRLN 348
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Match: A0A7S4DAV4_HETAK (Tryptophan synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV4_HETAK) HSP 1 Score: 288 bits (737), Expect = 4.180e-89 Identity = 156/259 (60.23%), Postives = 179/259 (69.11%), Query Frame = 1 Query: 1 SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMADGVVVGSPFMKAVDEMAPDAPASEIAAHLTKFTAVLKAGVDASEMSFVHTGKEGLSYQGKDVSGGYFGD-----FGGRYIPEILVEAHRELEEAYEAAKNDPAFHEEIAWYRREYIGGPTPMYHAKGLSEAMGGAQIWLKREELAHTGAHKINNAVGQALLAKRIGKKRIIAETGAGQHGVATATVCALLGMECVIYMGAVDCERQKLN 762 S GVTGAR+ +P DL FV R+R TD PL+ FGIS E V +V+ +ADGVVVGS M +D A + A E AA L F LK G + +Y S YFGD FGGRYIPE L EAH ELE+AY AK DPAF E+ +YRRE++GGPTPMYHA+ LS+ GGAQIWLKREELAHTGAHKINNAVGQALL KR+GK R+IAETGAGQHGVATA VCA +G+ CV+YMGAVDCERQ LN Sbjct: 226 SLTGVTGARSGLPDDLPDFVARIRGVTDMPLAVGFGISQPEHVAQVSKLADGVVVGSAIMNTIDGCAAGSSAQEKAAALEAFVGTLK-GACGEPAQTAGPARARGAYVAPPTST-YFGDDAQTGFGGRYIPETLAEAHVELEKAYAEAKADPAFQAEVDFYRREFVGGPTPMYHAERLSKHCGGAQIWLKREELAHTGAHKINNAVGQALLVKRMGKTRVIAETGAGQHGVATAAVCAHMGLPCVVYMGAVDCERQALN 482 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102377.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102377.208.1 >prot_H-elongata_contig102377.208.1 ID=prot_H-elongata_contig102377.208.1|Name=mRNA_H-elongata_contig102377.208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp SAAGVTGARTTIPSDLKKFVGRVRAATDKPLSAAFGISSVEQVKEVADMAback to top mRNA from alignment at H-elongata_contig102377:274..2342+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102377.208.1 ID=mRNA_H-elongata_contig102377.208.1|Name=mRNA_H-elongata_contig102377.208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2069bp|location=Sequence derived from alignment at H-elongata_contig102377:274..2342+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102377:274..2342+ >mRNA_H-elongata_contig102377.208.1 ID=mRNA_H-elongata_contig102377.208.1|Name=mRNA_H-elongata_contig102377.208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig102377:274..2342+ (Himanthalia elongata Himel1 dioecious)back to top |