mRNA_H-elongata_contig10223.198.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10223.198.1
Unique NamemRNA_H-elongata_contig10223.198.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.230e-23
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 VPIALVETSWSAPGQDHEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
            VPI+ V+T+W       +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:  169 VPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 229
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BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.160e-22
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 VPIALVETSWSAPGQDHEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
            VPI+ V+T+W       +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:  343 VPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 403
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.440e-22
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 VPIALVETSWSAPGQDHEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
            VPI+ V+T+W       +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:   60 VPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 120
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.530e-22
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 VPIALVETSWSAPGQDHEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
            VPI+ V+T+W       +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct: 1474 VPISPVDTTW------QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 1534
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.650e-21
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   49 HEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
             +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:    8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 58
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.920e-21
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   49 HEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
             +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 56
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.070e-21
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   28 WSAPGQDHEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
            WS   +D  GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:   67 WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 122
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.940e-21
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   49 HEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
             +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 56
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.450e-20
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   49 HEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
             +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:    3 QDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 53
[Close]
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.190e-20
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   49 HEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVINLGGKEACAGLTFVCLS 201
             +GGT  RTQLPL+LCWAIT+HKSQGQTL+K VI+LG KEAC GLTFVCLS
Sbjct:    6 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLS 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10223.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE5.230e-2368.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE3.160e-2268.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE3.440e-2268.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE4.530e-2268.66ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5KSF1_9PHAE1.650e-2178.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE3.920e-2178.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE4.070e-2174.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE7.940e-2178.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE1.450e-2078.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE7.190e-2078.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10223contigH-elongata_contig10223:5993..6193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.9
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog104355.XP_007870130.1
EggNOG OGs2D017@1,2SCDQ@2759,3AE97@33154,3P8YD@4751
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.922765-CDS-H-elongata_contig10223:5992..61931622929560.922765-CDS-H-elongata_contig10223:5992..6193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10223 5993..6193 -
1691679070.7122495-CDS-H-elongata_contig10223:5992..61931691679070.7122495-CDS-H-elongata_contig10223:5992..6193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10223 5993..6193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10223.198.1prot_H-elongata_contig10223.198.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10223 5993..6193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10223.198.1

>prot_H-elongata_contig10223.198.1 ID=prot_H-elongata_contig10223.198.1|Name=mRNA_H-elongata_contig10223.198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
VPIALVETSWSAPGQDHEGGTMARTQLPLKLCWAITIHKSQGQTLSKTVI
NLGGKEACAGLTFVCLS
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mRNA from alignment at H-elongata_contig10223:5993..6193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10223.198.1 ID=mRNA_H-elongata_contig10223.198.1|Name=mRNA_H-elongata_contig10223.198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig10223:5993..6193- (Himanthalia elongata Himel1 dioecious)
GTTCCAATCGCTCTTGTTGAGACCTCATGGTCTGCACCAGGCCAAGACCA
TGAAGGTGGTACCATGGCCAGAACTCAGCTCCCACTAAAGTTATGCTGGG
CTATCACCATACACAAAAGTCAAGGCCAGACGTTATCAAAGACCGTGATC
AATTTGGGGGGAAAAGAAGCGTGCGCTGGGTTGACTTTCGTCTGTTTGAG
T
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Coding sequence (CDS) from alignment at H-elongata_contig10223:5993..6193-

>mRNA_H-elongata_contig10223.198.1 ID=mRNA_H-elongata_contig10223.198.1|Name=mRNA_H-elongata_contig10223.198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig10223:5993..6193- (Himanthalia elongata Himel1 dioecious)
GTTCCAATCGCTCTTGTTGAGACCTCATGGTCTGCACCAGGCCAAGACCA
TGAAGGTGGTACCATGGCCAGAACTCAGCTCCCACTAAAGTTATGCTGGG
CTATCACCATACACAAAAGTCAAGGCCAGACGTTATCAAAGACCGTGATC
AATTTGGGGGGAAAAGAAGCGTGCGCTGGGTTGACTTTCGTCTGTTTGAG
TGTTCCAATCGCTCTTGTTGAGACCTCATGGTCTGCACCAGGCCAAGACC
ATGAAGGTGGTACCATGGCCAGAACTCAGCTCCCACTAAAGTTATGCTGG
GCTATCACCATACACAAAAGTCAAGGCCAGACGTTATCAAAGACCGTGAT
CAATTTGGGGGGAAAAGAAGCGTGCGCTGGGTTGACTTTCGTCTGTTTGA
GT
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