mRNA_H-elongata_contig10211.191.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: D8LGZ5_ECTSI (23S RNA-specific pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ5_ECTSI) HSP 1 Score: 214 bits (544), Expect = 9.880e-67 Identity = 125/226 (55.31%), Postives = 142/226 (62.83%), Query Frame = 1 Query: 16 MCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRK----------------------ASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFP----------LEDRSIMLHASELVVPHPTRRGQTVRVVAPPPEEWSRICGEDIADVVLAD 597 MC+ARTSKAA RLSASFR R VEKIYHA+VAG+L+G G R+DLLVS GA+ R+ A+ P SP G K A LEW AI+V SS L C R+G P TL+RVRL+TGRKHQIR QLA MG P+VGD RYGR RGG TD + P LEDRSI+LHASEL+VPHPTR G TVR VA PP WS +CG D V D Sbjct: 1 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRAGLSSVPARGGAGGRLLAAGPTSSPDG-KLAQLEWEAINVSSSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDATDESAVPPPRRAGRIEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVFGD 225
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE) HSP 1 Score: 207 bits (528), Expect = 6.270e-63 Identity = 128/233 (54.94%), Postives = 142/233 (60.94%), Query Frame = 1 Query: 4 VSGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRK--------ASRPVGSPLGA-------------KHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRF-----RGGGGTD--------VGSF-PLEDRSIMLHASELVVPHPTRRGQTVRVVAPPPEEWSRICGEDIADVVLAD 597 VSGVMC+ARTSKAA RLSASFR R VEKIYHA+VAG L+G G R+D LVS GA+ R+ +S PV G K A LEW AIDV S L C R+G P TL+RVRL+TGRKHQIR QLA MG P+VGD RYGR RGG TD GS PLEDRSI+LHASEL+VPHPTR G VR VA PP WS +CG D V D Sbjct: 104 VSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAVARRGRGPRTGLSSAPVRGGAGGRLLAAGPTSSSEGKLAQLEWEAIDVSPSSADRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSSWCQSRGGDATDESAVPPPRAGSMEPLEDRSILLHASELIVPHPTRVGAMVRAVAAPPGMWSDLCGRSCIDEVFGD 336
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A259TYX9_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TYX9_9BACT) HSP 1 Score: 120 bits (302), Expect = 2.220e-30 Identity = 89/201 (44.28%), Postives = 109/201 (54.23%), Query Frame = 1 Query: 7 SGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAI-DVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFPLED-RSIMLHASELVVPHPTRRGQTVRVVAPPPEEWSRICGEDIADVVLADTR 603 SGVM +ARTSKAA+RL+ FR R SVEK+Y A+V G L GSG ED L D G + R + GAK A+LEW A+ VR TL+RV L TGR HQ+R QL G+G PIVGD+RY PL D SI LHA+ L + HPT++ + R A PP W GED A + A+ R Sbjct: 64 SGVMVLARTSKAASRLTEQFRKR-SVEKVYLALVEGKLEGSGRLEDWLFKTHDT-ETGTRVKRVSSTTSGAKKAVLEWRALATVRGR--------------TLVRVVLETGRPHQVRVQLGGIGHPIVGDLRY----------AAPVPLGDGHSIALHAAHLALDHPTQKDRR-RFTAAPPPAW----GEDFARPIEAELR 233
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT) HSP 1 Score: 114 bits (286), Expect = 3.780e-28 Identity = 79/183 (43.17%), Postives = 99/183 (54.10%), Query Frame = 1 Query: 4 VSGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFPLEDRSIMLHASELVVPHPTRRGQTVRVVAPPPEEW 552 VSGVM +ARTSKAA RLS +FR+R VEK Y A+V G +SG+G RED L+ + GR P G K A+L W A+ L+L+ V+L+TGR HQ+R QLA +G PI+GD RYG R L+ R++ LHA L HP RR V APPP W Sbjct: 61 VSGVMVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLLKED-----GRVRIVSADHPKG-KRAVLRWQALGEEGR-------------LSLVEVKLLTGRAHQVRVQLAALGTPILGDFRYGATR----------ELDGRNLALHAYRLAFEHPVRREPLV-FTAPPPVSW 212
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT) HSP 1 Score: 105 bits (263), Expect = 1.310e-24 Identity = 82/202 (40.59%), Postives = 103/202 (50.99%), Query Frame = 1 Query: 4 VSGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFPLED-RSIMLHASELVVPHPTRRGQTVRVVAPPPEEWSRICGEDIADVVLADTRR 606 V G M IARTSKAA+RL+ FR R + EK Y A+V G L GSG D L+ D G + R GAK A++ WT+ S+ +RS L+ V L TGR HQIR QL+G+G PIVGD+RYG PL D R I LHA+ L + HPT+R + APP W I ++V R Sbjct: 63 VGGAMVIARTSKAASRLAEQFRQR-TPEKRYLAMVEGRLDGSGRETDWLLKTRDP-KRGTRVKRVRQGTDGAKRAVMTWTS--------RSVLGTRS-----LVEVGLETGRAHQIRVQLSGLGHPIVGDLRYGA----------EAPLGDGRGIALHATHLTIEHPTKRDRRTFTSAPP-RVWGGAFDPAIREIVRPSQSR 238
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A5S9IDS9_RHOMR (RNA pseudouridine synthase n=4 Tax=Rhodothermus marinus TaxID=29549 RepID=A0A5S9IDS9_RHOMR) HSP 1 Score: 103 bits (257), Expect = 1.100e-23 Identity = 79/183 (43.17%), Postives = 97/183 (53.01%), Query Frame = 1 Query: 4 VSGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFPLEDRSIMLHASELVVPHPTRRGQTVRVVAPPPEEW 552 VSGVM +ARTSKAA RL FR+R +VEK+Y A+V G L GSGT ED + D L P P G K A+L W A+ R+ LTL+R+ TGRKHQIR QLA G PI+GD RY R L + LHA +L + HPTRR + ++ AP P W Sbjct: 67 VSGVMVLARTSKAAARLMQQFRER-TVEKVYLALVEGELEGSGTWEDFMAPARDHMRL-----VPEDHPFG-KRAVLHWQALMTRNG-------------LTLMRLVPETGRKHQIRVQLAFRGYPILGDRRYRARRW----------LAPGQMALHAWKLALTHPTRR-ERMQWTAPVPPFW 218
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: UPI001420CA78 (RNA pseudouridine synthase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001420CA78) HSP 1 Score: 102 bits (254), Expect = 2.380e-23 Identity = 76/182 (41.76%), Postives = 94/182 (51.65%), Query Frame = 1 Query: 7 SGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFPLEDRSIMLHASELVVPHPTRRGQTVRVVAPPPEEW 552 SGVM +ARTSKAA RLS FR R EK Y A+V G +G+GT D LV G R + GA+ A L W + + L+L+ VRL TGR HQ+R QLA G P++GD RYG R PL+ R++ LHA L + HPTRR + VAPPP W Sbjct: 64 SGVMVLARTSKAAARLSDQFR-RRLPEKRYLALVEGVWTGAGTAVDHLVKAG------RTVRVVPATHPGARRAELAWRVL-----------ATDEAERLSLVEVRLETGRPHQVRVQLAHRGHPLLGDFRYGASR----------PLDGRNLALHAYRLGIEHPTRR-VPMHWVAPPPAAW 216
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A7K1ZH14_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium SB0668_bin_1 TaxID=2604896 RepID=A0A7K1ZH14_9BACT) HSP 1 Score: 102 bits (254), Expect = 4.140e-23 Identity = 76/196 (38.78%), Postives = 97/196 (49.49%), Query Frame = 1 Query: 7 SGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFPLEDRSIMLHASELVVPHPTRRGQTVRVVAPPPEEWSRICGEDIADVVLA 594 SGV+ +ARTSKAA RLS FR R + EK Y A+V G GSGT L + G P G G K A L+W ++ V+ L+LL VRL TGRKHQIR Q + G PI+GD RYG R L+ R++ LHA L V HP R + + PPP W + +IA + + Sbjct: 82 SGVVVLARTSKAAARLSDQFRQR-TPEKEYLALVEGVCRGSGTLRHTLAAS----VRGGVRIVPAGDASG-KEARLQWRSLGVQDD-------------LSLLSVRLETGRKHQIRVQFSAEGHPILGDFRYGALR----------ELDGRNLALHAFRLTVAHPVTR-ERMTFCTPPPPAWGTLFAREIAQALAS 247
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A2G6NW90_9BACT (RNA pseudouridine synthase n=2 Tax=unclassified Bacteria TaxID=49928 RepID=A0A2G6NW90_9BACT) HSP 1 Score: 101 bits (252), Expect = 4.700e-23 Identity = 74/185 (40.00%), Postives = 105/185 (56.76%), Query Frame = 1 Query: 4 VSGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSG-SGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYG-RFRGGGGTDVGSFPLEDRSIMLHASELVVPHPTRRGQTVRVVAPPPEEW 552 VSGV+ +ARTSKAA+RL+A+FRD+ VEKIY A+VAG +G + L ++GD + R +P GA+ ++L + ++ L+L+ VR VTGR+HQIRAQLA G P++GDV+YG R R L D + LHA L + HP G+ +R+ PPP +W Sbjct: 63 VSGVVLLARTSKAASRLAAAFRDKK-VEKIYQAVVAGRPHPEAGRLQAWLGAKGDARGVTRARRQPFS---GARESLLRYRLLEADQG-------------LSLVEVRPVTGRRHQIRAQLALAGHPLLGDVKYGSRHR-----------LPDHRLALHALALELEHPVG-GRALRLETPPPPDW 218
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Match: A0A271J2Z8_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J2Z8_9BACT) HSP 1 Score: 101 bits (251), Expect = 6.750e-23 Identity = 83/193 (43.01%), Postives = 104/193 (53.89%), Query Frame = 1 Query: 7 SGVMCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDLGALGRKASRPVGSPLGAKHAILEWTAIDVRSSGVASLCCSRSGTPLTLLRVRLVTGRKHQIRAQLAGMGCPIVGDVRYGRFRGGGGTDVGSFPLED-RSIMLHASELVVPHPTRRGQTVRVVAPPPEEWSRICGEDIAD 582 SGVM +ARTSKAA+RLS FR R +K Y A+V G+ G G V D G G PVG + A L + + R S +RS L+ V L+TGRKHQIRAQLA +G PI+GD RYG P D R + LHA LVV HPT+R + V VVAPPPE W+ + + +A+ Sbjct: 62 SGVMMLARTSKAASRLSDQFR-RRVPQKRYLAVVEGD-PGDGGAWTERVDAIDKGGGGSVDVVPVGE---GQRAALRYRTL-ARDS-------ARS-----LVEVELLTGRKHQIRAQLAELGAPILGDFRYGN----------QTPFADGRGVALHAYRLVVEHPTKR-EPVTVVAPPPEAWAGLFPDAVAE 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10211.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10211.191.1 >prot_H-elongata_contig10211.191.1 ID=prot_H-elongata_contig10211.191.1|Name=mRNA_H-elongata_contig10211.191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp MCIARTSKAATRLSASFRDRHSVEKIYHAIVAGNLSGSGTREDLLVSQGDback to top mRNA from alignment at H-elongata_contig10211:7955..8695- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10211.191.1 ID=mRNA_H-elongata_contig10211.191.1|Name=mRNA_H-elongata_contig10211.191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=741bp|location=Sequence derived from alignment at H-elongata_contig10211:7955..8695- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10211:7955..8695- >mRNA_H-elongata_contig10211.191.1 ID=mRNA_H-elongata_contig10211.191.1|Name=mRNA_H-elongata_contig10211.191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig10211:7955..8695- (Himanthalia elongata Himel1 dioecious)back to top |