mRNA_H-elongata_contig10207.187.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 233 bits (594), Expect = 3.430e-75 Identity = 112/167 (67.07%), Postives = 135/167 (80.84%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLA 501
M+KP+K H AK LRYLAG+ DFSITYK+GGF LA FSD+NW NNP+NG+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKE VFCS M+ ELGF + F +P+Y DN + LH GNR++S R KHIALR+FF+++L+ EGKISIHY TED LA
Sbjct: 22 MAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLA 188
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 240 bits (613), Expect = 3.730e-75 Identity = 115/168 (68.45%), Postives = 138/168 (82.14%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLAD 504
M+KP+K HM AKH LRYLAG+ DFSITYK+GGF LA FSD+NW NNP+NG+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKE VFCS M+ ELGF + F +P+Y DN + LH GNR++S R KHIALR+FF+++L+ EGKISIHY TED LAD
Sbjct: 247 MAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLAD 414
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 239 bits (610), Expect = 1.460e-72 Identity = 115/168 (68.45%), Postives = 138/168 (82.14%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLAD 504
M+KP+K HM AKH LRYLAG+ DFSITYK+GGF LA FSD+NW NNP+NG+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKE VFCS M+ ELG + F +P+Y DN + LH GNR++S R KHIALR+FF+++L+ EGKISIHYV TED LAD
Sbjct: 468 MAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLAD 635
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 243 bits (621), Expect = 3.890e-72 Identity = 116/168 (69.05%), Postives = 140/168 (83.33%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLAD 504
M+KP+K HM AKH LRYLAG+ DFSITYK+GGF LA FSD+NW NNP+NG+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKE VFCS M+ ELGF + F +P+Y DN + LH GNR++S R KHIALR+FF+++L+ EGKISIHYV+TED LAD
Sbjct: 807 MAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLAD 974
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.210e-68 Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLAD 504
M+KP+K HM AKH LRYLAG+ DFSITYK+GGF LA FSD+NW NNP+NG+STSSY+ +LANAP+SF+ GLQGLTA STMEAELVA+AL M E VF S M+ ELGF + F +P+Y DN + LH GNR++S R KHIALR+FF+++L+ EGKISIHYV TED LAD
Sbjct: 1476 MAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLAD 1643
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 232 bits (592), Expect = 4.510e-68 Identity = 111/168 (66.07%), Postives = 138/168 (82.14%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLAD 504
MS P+K HMG AKHLLRYL+GS DFSITYK+GGF L A SDANWGNNP+N +S SSYI+M++ AP+SFK GLQ LTA ST+EAELVAAAL MKE +FC+ M+ ELGF F S PLYI N + LHV GN+T+S R KH+ALR+F+++++++EG+ISIHY+ TED LAD
Sbjct: 501 MSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLAD 667
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 219 bits (557), Expect = 4.580e-64 Identity = 105/168 (62.50%), Postives = 136/168 (80.95%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLAD 504
MS P+K HMG AKHLLRYL+GS DFSITYK+GGF L A S+AN G+N +NG+S SSYI+M++ AP S K GLQ LTA ST+EAELVA+AL MKEV+FC+ M+ ELGF F S PL+ID+ + L+V GN+T+S KH+ALR+F+++K+++EG+ISIHY+ TED LAD
Sbjct: 588 MSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLAD 755
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE) HSP 1 Score: 209 bits (533), Expect = 1.200e-62 Identity = 104/158 (65.82%), Postives = 125/158 (79.11%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIH 474
MSK K HMG AKHLLR G+ DF ITYK+GGF L AFSDANW +NP+N RSTSSY++M++ AP+SFK GLQ LT STMEAEL+AAALTMKE VFCS M+ ELGF + FG VPLYI+N + LHV GN+ YS R KHIAL +F V++L++EG I+IH
Sbjct: 346 MSKAAKAHMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 214 bits (545), Expect = 1.610e-62 Identity = 100/168 (59.52%), Postives = 130/168 (77.38%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALRYFFVQKLIEEGKISIHYVKTEDQLAD 504
M+KP+K+HMG AK RYLAG++ F I YK+GGF L AF+D+NWGNNP+NG+STSS++ ML +AP++FK GLQ LT +STME ELVAAAL +KE VFCS ++ ELGF + VPLY DN + LH GNR+YS KHIALR+FF+++L+ EG+I+IHYV + AD
Sbjct: 530 MAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPAD 697
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE) HSP 1 Score: 202 bits (513), Expect = 4.830e-62 Identity = 98/142 (69.01%), Postives = 116/142 (81.69%), Query Frame = 1 Query: 1 MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENGRSTSSYIVMLANAPISFKVGLQGLTAESTMEAELVAAALTMKEVVFCSPMILELGFHESFGSVPLYIDNMSALHVAGNRTYSPRAKHIALR 426
M+KP+K HM AKH LRYLAG+ DFSITYK+GGF LA FSD+NW NNP+NG+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKE VFCS M+ ELGF + F +P+Y DN + LH GNR++S R KHIALR
Sbjct: 124 MAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10207.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10207.187.1 >prot_H-elongata_contig10207.187.1 ID=prot_H-elongata_contig10207.187.1|Name=mRNA_H-elongata_contig10207.187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp MSKPTKDHMGVAKHLLRYLAGSSDFSITYKQGGFTLAAFSDANWGNNPENback to top mRNA from alignment at H-elongata_contig10207:8017..8523+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10207.187.1 ID=mRNA_H-elongata_contig10207.187.1|Name=mRNA_H-elongata_contig10207.187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=507bp|location=Sequence derived from alignment at H-elongata_contig10207:8017..8523+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10207:8017..8523+ >mRNA_H-elongata_contig10207.187.1 ID=mRNA_H-elongata_contig10207.187.1|Name=mRNA_H-elongata_contig10207.187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig10207:8017..8523+ (Himanthalia elongata Himel1 dioecious)back to top |