mRNA_H-elongata_contig102057.186.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102057.186.1
Unique NamemRNA_H-elongata_contig102057.186.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.230e-26
Identity = 61/145 (42.07%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG  IS+ G    EI  R+  AW CF + S ++YD P      K+R L+AEV+E +LYGC +W+L+   + KL   HR  L RC+      R+   +  LSY + L++  CE  I+A V K  L +AG V+RM
Sbjct:  112 GQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 253          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.800e-26
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDC-ECIDAAVMKLILHYAGRVVRM 432
            G  + Q   FVYLG  I   G +  EI  R   A  CF + S+A+YD P   +  KVR L+AEV+E +LYGCVTW L P ++ KLR AH   LLRC+      R   K+  LSY + L+   C E ++A V K  L +AG V RM
Sbjct:  119 GMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRER---KDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARM 260          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5JPY3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.000e-25
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L RC+      R+   +  LSY + L++  CE  I+A V K  L +AG V+RM
Sbjct:   61 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 202          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.330e-25
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG TIS+ G V  EI  RT  AW C+ + S ++YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L RC+      R+   +  LSY + L++  CE  I+A V K  L + G VVRM
Sbjct:  549 GQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFVGFVVRM 690          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5K8E6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.060e-25
Identity = 61/145 (42.07%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y+Q D FVYLG TIS+ G V  EI  R+  AW C+ + S ++YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L RC+      R+   +  LSY + L++  CE  I+A V K  L +AG V+RM
Sbjct:  365 GQTYNQTDRFVYLGRTISADGKVDREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 506          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.060e-25
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+AEV+E +LYGC +W+L+   + KL E HR  L RC+      R+   +  LSY + L++  CE  I+A V K  L +AG V+RM
Sbjct:  406 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 547          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 8.590e-25
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L RC+      R+   +  LSY + L++  CE  I+A V K  L +AG V+RM
Sbjct:  162 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 303          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5JAM2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.260e-24
Identity = 58/145 (40.00%), Postives = 83/145 (57.24%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG  IS+ G    EI  R+  AW C+ + S ++YD        K+R L+AEV+E +L+GC +W+L+   + KL   HR  L RC+      R+   +  LSY + L++  CE  I+A+V K  L +AG V+RM
Sbjct:   61 GQTYKQTDRFVYLGRIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLHGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYTQALIQAGCEETIEASVRKRGLCFAGFVMRM 202          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L7Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.300e-24
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD   +    K+R L+AEV+E +LYGC +W+L+   + KL   HR  L RC+      R+   +  LS+   L++  CE  I+A V K  L +AG V+ M
Sbjct:   32 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRKSASMYDRRRVDRKLKIRLLQAEVVETLLYGCASWSLTAEHYTKLIGTHRQFLTRCIGWSKRKRS---DRPLSFARALIQAGCEETIEATVRKRRLCFAGFVMCM 173          
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5KG97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG97_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.600e-24
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
            GQ Y Q D FVYLG TIS+ G    EI  R+  AW C+ + S ++YD        K+R L+AEV+E +LYGC +W+L+   + KL   HR  L RC+      R+   +  LSY +VL++  CE  I+A   K  L + G V+RM
Sbjct:   78 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQVLIQAGCEETIEATARKRRLCFVGFVMRM 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5J5_9PHAE4.230e-2642.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2J8_9PHAE4.800e-2643.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPY3_9PHAE2.000e-2541.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L020_9PHAE2.330e-2542.76Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K8E6_9PHAE3.060e-2542.07Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JZD4_9PHAE3.060e-2542.07Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5T8_9PHAE8.590e-2541.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JAM2_9PHAE1.260e-2440.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L7Y9_9PHAE1.300e-2440.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG97_9PHAE1.600e-2440.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102057contigH-elongata_contig102057:67..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score69.7
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog13616.ENSMODP00000040406
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,3JN9Q@40674,48QQZ@7711,49FN3@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.2601333-CDS-H-elongata_contig102057:66..4981622929560.2601333-CDS-H-elongata_contig102057:66..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102057 67..498 +
1691679070.3877468-CDS-H-elongata_contig102057:66..4981691679070.3877468-CDS-H-elongata_contig102057:66..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102057 67..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102057.186.1prot_H-elongata_contig102057.186.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102057 67..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102057.186.1

>prot_H-elongata_contig102057.186.1 ID=prot_H-elongata_contig102057.186.1|Name=mRNA_H-elongata_contig102057.186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPH
IVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAY
TSTRAAPKNHMLSYLEVLLRTDCECIDAAVMKLILHYAGRVVRM
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mRNA from alignment at H-elongata_contig102057:67..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102057.186.1 ID=mRNA_H-elongata_contig102057.186.1|Name=mRNA_H-elongata_contig102057.186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig102057:67..498+ (Himanthalia elongata Himel1 dioecious)
GGGCAAAGGTACAGCCAAGTCGACACCTTCGTGTATCTTGGCAGCACCAT CAGCAGCGTTGGAGACGTCGGCCTTGAGATCAAACGCCGTACTGGCTACG CCTGGAACTGCTTCCTCAAGTACAGCAGGGCGGTGTATGACAACCCACAC ATCGTAGTGGCAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCGAGGT CATGCTCTACGGCTGTGTGACTTGGACTCTTTCACCCGGCGACTTCGACA AGTTGCGGGAAGCCCACCGCGGAATGCTGCTGAGGTGCCTCAATGCCTAC ACCTCGACGCGGGCCGCCCCTAAGAACCACATGCTCTCATACCTCGAGGT CCTCCTCAGGACTGACTGTGAGTGCATTGATGCTGCTGTGATGAAGCTCA TCCTCCACTACGCCGGCCGCGTCGTACGCATG
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Coding sequence (CDS) from alignment at H-elongata_contig102057:67..498+

>mRNA_H-elongata_contig102057.186.1 ID=mRNA_H-elongata_contig102057.186.1|Name=mRNA_H-elongata_contig102057.186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig102057:67..498+ (Himanthalia elongata Himel1 dioecious)
GGGCAAAGGTACAGCCAAGTCGACACCTTCGTGTATCTTGGCAGCACCAT
CAGCAGCGTTGGAGACGTCGGCCTTGAGATCAAACGCCGTACTGGCTACG
CCTGGAACTGCTTCCTCAAGTACAGCAGGGCGGTGTATGACAACCCACAC
ATCGTAGTGGCAGACAAGGTCCGTTTCCTGAAGGCGGAAGTACTCGAGGT
CATGCTCTACGGCTGTGTGACTTGGACTCTTTCACCCGGCGACTTCGACA
AGTTGCGGGAAGCCCACCGCGGAATGCTGCTGAGGTGCCTCAATGCCTAC
ACCTCGACGCGGGCCGCCCCTAAGAACCACATGCTCTCATACCTCGAGGT
CCTCCTCAGGACTGACTGTGAGTGCATTGATGCTGCTGTGATGAAGCTCA
TCCTCCACTACGCCGGCCGCGTCGTACGCATGGGGCAAAGGTACAGCCAA
GTCGACACCTTCGTGTATCTTGGCAGCACCATCAGCAGCGTTGGAGACGT
CGGCCTTGAGATCAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTCA
AGTACAGCAGGGCGGTGTATGACAACCCACACATCGTAGTGGCAGACAAG
GTCCGTTTCCTGAAGGCGGAAGTACTCGAGGTCATGCTCTACGGCTGTGT
GACTTGGACTCTTTCACCCGGCGACTTCGACAAGTTGCGGGAAGCCCACC
GCGGAATGCTGCTGAGGTGCCTCAATGCCTACACCTCGACGCGGGCCGCC
CCTAAGAACCACATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTG
TGAGTGCATTGATGCTGCTGTGATGAAGCTCATCCTCCACTACGCCGGCC
GCGTCGTACGCATG
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