mRNA_H-elongata_contig102057.186.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE) HSP 1 Score: 110 bits (275), Expect = 4.230e-26 Identity = 61/145 (42.07%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG IS+ G EI R+ AW CF + S ++YD P K+R L+AEV+E +LYGC +W+L+ + KL HR L RC+ R+ + LSY + L++ CE I+A V K L +AG V+RM
Sbjct: 112 GQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 253
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 108 bits (270), Expect = 4.800e-26 Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDC-ECIDAAVMKLILHYAGRVVRM 432
G + Q FVYLG I G + EI R A CF + S+A+YD P + KVR L+AEV+E +LYGCVTW L P ++ KLR AH LLRC+ R K+ LSY + L+ C E ++A V K L +AG V RM
Sbjct: 119 GMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRER---KDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARM 260
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5JPY3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY3_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.000e-25 Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG TIS+ G EI R+ AW C+ + S ++YD K+R L+AEV+E +LYGC +W+L+ + KL HR L RC+ R+ + LSY + L++ CE I+A V K L +AG V+RM
Sbjct: 61 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 202
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.330e-25 Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG TIS+ G V EI RT AW C+ + S ++YD K+R L+AEV+E +LYGC +W+L+ + KL HR L RC+ R+ + LSY + L++ CE I+A V K L + G VVRM
Sbjct: 549 GQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFVGFVVRM 690
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5K8E6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E6_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.060e-25 Identity = 61/145 (42.07%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y+Q D FVYLG TIS+ G V EI R+ AW C+ + S ++YD K+R L+AEV+E +LYGC +W+L+ + KL HR L RC+ R+ + LSY + L++ CE I+A V K L +AG V+RM
Sbjct: 365 GQTYNQTDRFVYLGRTISADGKVDREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 506
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE) HSP 1 Score: 110 bits (274), Expect = 3.060e-25 Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG TIS+ G EI R+ AW C+ + S ++YD K+R L+AEV+E +LYGC +W+L+ + KL E HR L RC+ R+ + LSY + L++ CE I+A V K L +AG V+RM
Sbjct: 406 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 547
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE) HSP 1 Score: 107 bits (268), Expect = 8.590e-25 Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG TIS+ G EI R+ AW C+ + S ++YD K+R L+AEV+E +LYGC +W+L+ + KL HR L RC+ R+ + LSY + L++ CE I+A V K L +AG V+RM
Sbjct: 162 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM 303
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5JAM2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM2_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.260e-24 Identity = 58/145 (40.00%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG IS+ G EI R+ AW C+ + S ++YD K+R L+AEV+E +L+GC +W+L+ + KL HR L RC+ R+ + LSY + L++ CE I+A+V K L +AG V+RM
Sbjct: 61 GQTYKQTDRFVYLGRIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLHGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYTQALIQAGCEETIEASVRKRGLCFAGFVMRM 202
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5L7Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y9_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.300e-24 Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG TIS+ G EI R+ AW C+ + S ++YD + K+R L+AEV+E +LYGC +W+L+ + KL HR L RC+ R+ + LS+ L++ CE I+A V K L +AG V+ M
Sbjct: 32 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRKSASMYDRRRVDRKLKIRLLQAEVVETLLYGCASWSLTAEHYTKLIGTHRQFLTRCIGWSKRKRS---DRPLSFARALIQAGCEETIEATVRKRRLCFAGFVMCM 173
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Match: A0A6H5KG97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG97_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.600e-24 Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1 GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHIVVADKVRFLKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPKNHMLSYLEVLLRTDCE-CIDAAVMKLILHYAGRVVRM 432
GQ Y Q D FVYLG TIS+ G EI R+ AW C+ + S ++YD K+R L+AEV+E +LYGC +W+L+ + KL HR L RC+ R+ + LSY +VL++ CE I+A K L + G V+RM
Sbjct: 78 GQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRS---DRPLSYAQVLIQAGCEETIEATARKRRLCFVGFVMRM 219 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102057.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102057.186.1 >prot_H-elongata_contig102057.186.1 ID=prot_H-elongata_contig102057.186.1|Name=mRNA_H-elongata_contig102057.186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp GQRYSQVDTFVYLGSTISSVGDVGLEIKRRTGYAWNCFLKYSRAVYDNPHback to top mRNA from alignment at H-elongata_contig102057:67..498+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102057.186.1 ID=mRNA_H-elongata_contig102057.186.1|Name=mRNA_H-elongata_contig102057.186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig102057:67..498+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102057:67..498+ >mRNA_H-elongata_contig102057.186.1 ID=mRNA_H-elongata_contig102057.186.1|Name=mRNA_H-elongata_contig102057.186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig102057:67..498+ (Himanthalia elongata Himel1 dioecious)back to top |