mRNA_H-elongata_contig102036.185.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE) HSP 1 Score: 286 bits (733), Expect = 9.630e-87 Identity = 187/344 (54.36%), Postives = 213/344 (61.92%), Query Frame = 1
Query: 46 VCSSA--SDGFITPPACLARSFGAGDPFYSVERRLGSCGEEGRHQ----RRGEARRSATTPRP----------------GARWW---RSASTTGAPCRMKAAAGVQAASEAALLENDPSHRKQGSPGMPFDMHDDSDFYREMEELRSRKDTRSSSNSLRLLIDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSEPLAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
+C+SA ++GF TPP CLAR GAGD FYS ERRL + GR RRG R P ARW + S + A M AA + E L P PGMPFDM DDS+FY EME + T + + + XXXXXXX + LAFYLR +AKVDLLKPHEE++LGRQIQKGV YENTRDHLQLMRG EPTEEEWA+ALG+D EEL KEL RA KAKMAMLAANLRLVVS+AKRYR++ L+F DLIQEGTFGLVKA+EKFDPERGFKFSTYATWWIKQSI+RG+ADQ
Sbjct: 1 MCASAPPAEGF-TPPVCLARVCGAGDAFYSAERRLAAGSGAGRDGGSGGRRGTMRGREAAAAPVARGALPAPPTRRRSTAARWMIQHPAPSRSAATRMMSAAVAAEPVEELDTLRPPPPQL----PGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDM---------------VGLGKVSTKKSAKRDGXXXXXXXXXDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPTEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQ 324
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI) HSP 1 Score: 247 bits (631), Expect = 1.190e-72 Identity = 122/146 (83.56%), Postives = 136/146 (93.15%), Query Frame = 1
Query: 565 EPLAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
+ LAFYLR +AKVDLLKPHEE++LGRQIQKGV YENTRDHLQLMRG EP+EEEWA+ALG+D EEL KEL RA KAKMAMLAANLRLVVS+AKRYR++ L+F DLIQEGTFGLVKA+EKFDPERGFKFSTYATWWIKQSI+RG+ADQ
Sbjct: 49 DALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQ 194
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA) HSP 1 Score: 171 bits (433), Expect = 2.500e-46 Identity = 81/144 (56.25%), Postives = 112/144 (77.78%), Query Frame = 1
Query: 571 LAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
L++YL M+ +DLLKP EEV LGR IQ G+++E ++ L + ++P+ EWA +G+DE+ L + R+ +AK M++ANLRL VSIAKRY+ RGL DL+QEG+FGL+KA+E+FDP++GFKFSTYATWWIKQSI+R +ADQ
Sbjct: 58 LSWYLSRMSAIDLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKHRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQ 201
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA) HSP 1 Score: 169 bits (427), Expect = 5.710e-46 Identity = 82/144 (56.94%), Postives = 108/144 (75.00%), Query Frame = 1
Query: 571 LAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
L + M +DLLKP EE+ L RQI+ G+++E R+ L + + P+ EWA +G+DE+ L + R+ +AK M++ANLRL VSIAKRYR RGL PDLIQEG+FGL+KA+E+FDPE+GFKFSTYATWWIKQSI+R +ADQ
Sbjct: 17 LQHLFKRMTSIDLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAKRYRRRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQ 160
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE) HSP 1 Score: 171 bits (433), Expect = 7.070e-44 Identity = 86/148 (58.11%), Postives = 111/148 (75.00%), Query Frame = 1
Query: 559 NSEPLAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
++ PL Y + + K+ LLKP EEV+LGRQIQ+G++ E RD L+ G P+ EEWA L + ++EL +EL A +AK M++ANLRLVVS+A+ YR RGL FPDLIQEGT GLVKA EKF+PE GF+F TYA WWIK+SIL G+A+Q
Sbjct: 236 DANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYAQWWIKKSILTGIANQ 383
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA) HSP 1 Score: 160 bits (405), Expect = 4.610e-42 Identity = 80/146 (54.79%), Postives = 107/146 (73.29%), Query Frame = 1
Query: 565 EPLAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
E ++ YL+ M DLL+ EEVIL R IQ +K+E R+ L+ + PT EWA+A+ +D L +++ R+++AK A++ +NLRLVVSIAKRY RG+ F DL QEGT GL +A+EKFDPERGF+FSTYATWWIKQ I+R +ADQ
Sbjct: 88 ESISHYLKTMGNHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAVAVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRGMNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQ 233
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA) HSP 1 Score: 162 bits (409), Expect = 5.340e-42 Identity = 79/148 (53.38%), Postives = 113/148 (76.35%), Query Frame = 1
Query: 559 NSEPLAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
+S L ++ +++ + LL+ EEV+L R++Q + +E+ RD L+ G+ PT EEWA ++G+ +EL ++L R + AK AM+++NLRLV+SIAKRY+ RGL DLIQEG+ GLV+A EKFDPE+GFKFSTY+TWWIKQ+ILR +ADQ
Sbjct: 156 SSNELGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQ 303
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A7S2SH06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SH06_9STRA) HSP 1 Score: 157 bits (397), Expect = 8.460e-41 Identity = 79/149 (53.02%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 562 SEPLAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALAL--GIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
++ + +YL+ M +LLK +EE+IL R+IQ +K+E R+ L+ + PT EWA A+ G+ E+ K++ R+ +AK A+ +NLRLV+SIAK+Y+ RGLTF DL QEGT GL +A EKFDPERGF+FSTYATWWIKQ I+R +ADQ
Sbjct: 165 NDSMKYYLKTMGNHELLKKNEEIILAREIQILIKWETQREELESSLMRPPTYAEWAAAVQKGMTVPEMKKQIRRSLRAKTALTESNLRLVISIAKKYQNRGLTFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQ 313
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA) HSP 1 Score: 157 bits (397), Expect = 3.030e-40 Identity = 78/143 (54.55%), Postives = 107/143 (74.83%), Query Frame = 1
Query: 580 YLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALALGIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRY--RWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
YL++M DLL EEV+L R +Q +K+E R+ L++ + PT EWA A+G+D ++L +++ R+++AK AM+ +NLRLV+SIAKRY R L+ DL QEG+ GLVKA EKFDPERGF+FSTYATWWIKQS++R +ADQ
Sbjct: 177 YLKSMGNHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQ 319
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Match: B8C130_THAPS (RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C130_THAPS) HSP 1 Score: 153 bits (386), Expect = 3.240e-40 Identity = 76/148 (51.35%), Postives = 107/148 (72.30%), Query Frame = 1
Query: 565 EPLAFYLRNMAKVDLLKPHEEVILGRQIQKGVKYENTRDHLQLMRGKEPTEEEWALAL--GIDEEELSKELGRARKAKMAMLAANLRLVVSIAKRYRWRGLTFPDLIQEGTFGLVKASEKFDPERGFKFSTYATWWIKQSILRGVADQ 1002
+ + +Y++ M DLL+ +EE+IL R+IQ +K+E R+ L+ + PT +EWA A+ G+ ++ K++ R+ +AK A+ +NLRLV+SIAKRY+ RGL DL QEGT GL +A EKFDPERGF+FSTYATWWIKQ I+R +ADQ
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQ 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102036.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102036.185.1 >prot_H-elongata_contig102036.185.1 ID=prot_H-elongata_contig102036.185.1|Name=mRNA_H-elongata_contig102036.185.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp MVSSRRKLTVCVVGAVCSSASDGFITPPACLARSFGAGDPFYSVERRLGSback to top mRNA from alignment at H-elongata_contig102036:320..1817- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102036.185.1 ID=mRNA_H-elongata_contig102036.185.1|Name=mRNA_H-elongata_contig102036.185.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1498bp|location=Sequence derived from alignment at H-elongata_contig102036:320..1817- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102036:320..1817- >mRNA_H-elongata_contig102036.185.1 ID=mRNA_H-elongata_contig102036.185.1|Name=mRNA_H-elongata_contig102036.185.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2064bp|location=Sequence derived from alignment at H-elongata_contig102036:320..1817- (Himanthalia elongata Himel1 dioecious)back to top |