mRNA_H-elongata_contig102016.182.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.050e-13 Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1
Query: 13 EDPKHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKA 144
ED KH G GGMADTRDPEP D DPRKSIS AP+FEEY+KQK+A
Sbjct: 33 EDEKHRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQA 76
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.490e-13 Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1
Query: 1 MAEEEDPKHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAE 147
MA + KH G GGMADTRDPEP D DPRKSIS AP+FEEY+KQK+AE
Sbjct: 27 MALSAEEKHRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQAE 75
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: K0TRG6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TRG6_THAOC) HSP 1 Score: 65.5 bits (158), Expect = 3.380e-12 Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1
Query: 22 KHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQK 138
K LGSGGMADTRDPE +D DPRKSISAAPSFEEYLKQ+
Sbjct: 92 KKLGSGGMADTRDPEAFEDEDPRKSISAAPSFEEYLKQR 130
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A835YPW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW3_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.790e-11 Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 25 HLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKA 144
H+G+GGMADTR+P+PKD DPRKSIS AP+FEEYLKQ+ A
Sbjct: 147 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAA 186
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2JSU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSU5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.240e-11 Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query: 28 LGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQK 138
LG+GGMADTRDPE D DPRKSISAAPSFEEYLKQ+
Sbjct: 31 LGAGGMADTRDPEEYSDDDPRKSISAAPSFEEYLKQR 67
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2XX01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX01_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 6.390e-11 Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query: 19 PKHLGSGGMADTRDPEPK-DDPDPRKSISAAPSFEEYLKQK 138
P H+GSGGMADTRDPEP ++ DPR+SISAAPSFEEY+KQK
Sbjct: 38 PGHVGSGGMADTRDPEPFINESDPRQSISAAPSFEEYMKQK 78
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2BTZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTZ6_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 7.120e-11 Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 22 KHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAEE 150
+H+G GGM DTRDPE DPRKSISAAPSFEEY+KQ+ AE+
Sbjct: 75 EHVGKGGMVDTRDPEVMTHEDPRKSISAAPSFEEYMKQRAAEQ 117
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2MQH4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQH4_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 9.630e-11 Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1
Query: 25 HLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLK 132
H+GSGGMADTRDP+ + DPRKSISAAPSFEEYLK
Sbjct: 33 HIGSGGMADTRDPDAMEHEDPRKSISAAPSFEEYLK 68
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: K0TP57_THAOC (FAS1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TP57_THAOC) HSP 1 Score: 63.9 bits (154), Expect = 1.060e-10 Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query: 28 LGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAE 147
LGSGGMADTRDPE +D DPRKSISAAPSFEEYLK + AE
Sbjct: 35 LGSGGMADTRDPEAFNDEDPRKSISAAPSFEEYLKSRAAE 74
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: B8LEA0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEA0_THAPS) HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10 Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1
Query: 22 KHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAEE 150
+H+GSGGMADTR+PE + DPRKSISAAPSFEEYLKQ+ A++
Sbjct: 29 QHIGSGGMADTRNPEASVNEDPRKSISAAPSFEEYLKQRAAQD 71 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102016.182.1 >prot_H-elongata_contig102016.182.1 ID=prot_H-elongata_contig102016.182.1|Name=mRNA_H-elongata_contig102016.182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp MAEEEDPKHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAEEback to top mRNA from alignment at H-elongata_contig102016:228..386+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102016.182.1 ID=mRNA_H-elongata_contig102016.182.1|Name=mRNA_H-elongata_contig102016.182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig102016:228..386+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102016:228..386+ >mRNA_H-elongata_contig102016.182.1 ID=mRNA_H-elongata_contig102016.182.1|Name=mRNA_H-elongata_contig102016.182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig102016:228..386+ (Himanthalia elongata Himel1 dioecious)back to top |