mRNA_H-elongata_contig102016.182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102016.182.1
Unique NamemRNA_H-elongata_contig102016.182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.050e-13
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1
Query:   13 EDPKHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKA 144
            ED KH G GGMADTRDPEP D  DPRKSIS AP+FEEY+KQK+A
Sbjct:   33 EDEKHRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQA 76          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.490e-13
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 MAEEEDPKHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAE 147
            MA   + KH G GGMADTRDPEP D  DPRKSIS AP+FEEY+KQK+AE
Sbjct:   27 MALSAEEKHRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQAE 75          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: K0TRG6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TRG6_THAOC)

HSP 1 Score: 65.5 bits (158), Expect = 3.380e-12
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1
Query:   22 KHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQK 138
            K LGSGGMADTRDPE  +D DPRKSISAAPSFEEYLKQ+
Sbjct:   92 KKLGSGGMADTRDPEAFEDEDPRKSISAAPSFEEYLKQR 130          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A835YPW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.790e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:   25 HLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKA 144
            H+G+GGMADTR+P+PKD  DPRKSIS AP+FEEYLKQ+ A
Sbjct:  147 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAA 186          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2JSU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSU5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.240e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1
Query:   28 LGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQK 138
            LG+GGMADTRDPE   D DPRKSISAAPSFEEYLKQ+
Sbjct:   31 LGAGGMADTRDPEEYSDDDPRKSISAAPSFEEYLKQR 67          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2XX01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX01_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.390e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query:   19 PKHLGSGGMADTRDPEPK-DDPDPRKSISAAPSFEEYLKQK 138
            P H+GSGGMADTRDPEP  ++ DPR+SISAAPSFEEY+KQK
Sbjct:   38 PGHVGSGGMADTRDPEPFINESDPRQSISAAPSFEEYMKQK 78          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2BTZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTZ6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.120e-11
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   22 KHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAEE 150
            +H+G GGM DTRDPE     DPRKSISAAPSFEEY+KQ+ AE+
Sbjct:   75 EHVGKGGMVDTRDPEVMTHEDPRKSISAAPSFEEYMKQRAAEQ 117          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: A0A7S2MQH4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQH4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.630e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1
Query:   25 HLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLK 132
            H+GSGGMADTRDP+  +  DPRKSISAAPSFEEYLK
Sbjct:   33 HIGSGGMADTRDPDAMEHEDPRKSISAAPSFEEYLK 68          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: K0TP57_THAOC (FAS1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TP57_THAOC)

HSP 1 Score: 63.9 bits (154), Expect = 1.060e-10
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:   28 LGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAE 147
            LGSGGMADTRDPE  +D DPRKSISAAPSFEEYLK + AE
Sbjct:   35 LGSGGMADTRDPEAFNDEDPRKSISAAPSFEEYLKSRAAE 74          
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Match: B8LEA0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEA0_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1
Query:   22 KHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAEE 150
            +H+GSGGMADTR+PE   + DPRKSISAAPSFEEYLKQ+ A++
Sbjct:   29 QHIGSGGMADTRNPEASVNEDPRKSISAAPSFEEYLKQRAAQD 71          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102016.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTB4_9STRA1.050e-1377.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLE0_9STRA1.490e-1371.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TRG6_THAOC3.380e-1284.62Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835YPW3_9STRA1.790e-1175.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2JSU5_9STRA3.240e-1183.78Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2XX01_9STRA6.390e-1178.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BTZ6_9STRA7.120e-1169.77Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2MQH4_9STRA9.630e-1180.56Hypothetical protein (Fragment) n=3 Tax=Helicothec... [more]
K0TP57_THAOC1.060e-1082.50FAS1 domain-containing protein n=1 Tax=Thalassiosi... [more]
B8LEA0_THAPS1.200e-1072.09Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102016contigH-elongata_contig102016:228..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue5.1e-09
Seed eggNOG ortholog159749.K0TRG6
EggNOG OGs2D5RA@1,2SZDG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.0269148-CDS-H-elongata_contig102016:227..3861622929560.0269148-CDS-H-elongata_contig102016:227..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102016 228..386 +
1691679070.3145761-CDS-H-elongata_contig102016:227..3861691679070.3145761-CDS-H-elongata_contig102016:227..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102016 228..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102016.182.1prot_H-elongata_contig102016.182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102016 228..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102016.182.1

>prot_H-elongata_contig102016.182.1 ID=prot_H-elongata_contig102016.182.1|Name=mRNA_H-elongata_contig102016.182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAEEEDPKHLGSGGMADTRDPEPKDDPDPRKSISAAPSFEEYLKQKKAEE
NK*
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mRNA from alignment at H-elongata_contig102016:228..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102016.182.1 ID=mRNA_H-elongata_contig102016.182.1|Name=mRNA_H-elongata_contig102016.182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig102016:228..386+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGAGGAGGAAGACCCGAAGCACCTCGGCAGCGGTGGCATGGCTGA CACCCGAGACCCCGAACCCAAGGACGACCCCGACCCGCGCAAGTCTATTT CTGCTGCTCCTTCCTTCGAGGAGTACCTCAAACAGAAGAAGGCAGAAGAG AACAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig102016:228..386+

>mRNA_H-elongata_contig102016.182.1 ID=mRNA_H-elongata_contig102016.182.1|Name=mRNA_H-elongata_contig102016.182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig102016:228..386+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGAGGAGGAAGACCCGAAGCACCTCGGCAGCGGTGGCATGGCTGA
CACCCGAGACCCCGAACCCAAGGACGACCCCGACCCGCGCAAGTCTATTT
CTGCTGCTCCTTCCTTCGAGGAGTACCTCAAACAGAAGAAGGCAGAAGAG
AACAAGTGAATGGCCGAGGAGGAAGACCCGAAGCACCTCGGCAGCGGTGG
CATGGCTGACACCCGAGACCCCGAACCCAAGGACGACCCCGACCCGCGCA
AGTCTATTTCTGCTGCTCCTTCCTTCGAGGAGTACCTCAAACAGAAGAAG
GCAGAAGAGAACAAGTGA
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