mRNA_H-elongata_contig102.181.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 100 bits (250), Expect = 3.080e-22 Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369 S S LWKPYKP+ FYY+V+E L+++F F +ISEGLAPY S D W+NR+GH VVV SMY ALL K D+ + Q FE +L+ +V+M++ +AE Sbjct: 1464 STSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAE 1584
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.000e-21 Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAEATI 378 S S LWKPYKP+ FYY+VIE L+++F F ++SEGLAPY S D W++R+GHAVV SMY ALL K D+ N+ Q FEV+L++ + MI+ + E + Sbjct: 1919 STSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVV 2042
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 1.510e-19 Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 1 Query: 7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369 S S LWKPYKP+ FYY+VIE LM++F F ++SEGLAP+ S DAW+NR GH VV SMY ALL K D+ + Q +E++L++ + MI+ + E Sbjct: 1108 STSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTE 1228
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 2.660e-19 Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAEA 372 S S LWKPY+P+ FYY+V E LM++F F I+SE L+PY S D WVNR+GH VV SM+ ALL K D+ ++ Q FE +L++ +V M++ + EA Sbjct: 550 STSGLWKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEA 671
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 5.250e-19 Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369 S S LW+PYKP+ FYY+VIE LM++F F ++SE ++PY S + WVNR+GH VV SMY ALL K D+ ++ Q+ FE +L++++ MI+ + E Sbjct: 1279 STSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1399
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.480e-18 Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369 S S LW+PYKP+ FYY+VIE LM++F F ++SE ++PY S + WVNR+GH VV S+Y ALL K D+ ++ Q+ FE +L++++ MI+ + E Sbjct: 1338 STSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1458
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 1.570e-17 Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 1 Query: 13 SSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMI 351 + LWKPY+P+ FYY+VIE AL+++ VF +ISE LAPY S D W+ R+GHAVV SMY ALL K D+ ++ Q FE +L++ +V M+ Sbjct: 831 ADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMV 943
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 5.420e-17 Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 1 MGSISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369 + SIS+LW+PY+P+ +YY+VIE L+++ VF ++SE L PY D WV+R+ HAVV S+Y ALL K D+ N+ Q FE +L++ + MI+ + E Sbjct: 867 VASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVE 989
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 5.660e-17 Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 1 MGSISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369 + SIS+LW+PY+P+ +YY+VIE L+++ VF ++SE L PY D WV+R+ HAVV S+Y ALL K D+ N+ Q FE +L++ + MI+ + E Sbjct: 2605 VASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVE 2727
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.250e-15 Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 1 Query: 7 SISSLWKPYKPTRFYYKVIESXXXXXXXXXXXXXXXXXXXXXXXALMLSFVFFIISEGLAPYESHVDAWVNRLGHAVVVFSMYYALLSKFDILNDSHLIQNAFEVMLISIYVLMIIFEIAE 369 SIS LW+PY+P RFYY+V+E L+ +F FF I E ++PY+S D W++R GH +V FSM+ LL K D+ ++ Q F +L++ +VLM++ + E Sbjct: 895 SISGLWEPYRPERFYYEVVECGRRVMLTGVVVFIFPNDAAQIAITLLSAFCFFAIFEMVSPYKSDSDMWLSRGGHVIVFFSMFDLLLRKVDVSDEREESQAVFAGVLVAGHVLMVLAIVVE 1015 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102.181.1 >prot_H-elongata_contig102.181.1 ID=prot_H-elongata_contig102.181.1|Name=mRNA_H-elongata_contig102.181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp MGSISSLWKPYKPTRFYYKVIESSRRMMLIGVVVVMQDDSATQIAAALMLback to top mRNA from alignment at H-elongata_contig102:26574..26954+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102.181.1 ID=mRNA_H-elongata_contig102.181.1|Name=mRNA_H-elongata_contig102.181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig102:26574..26954+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102:26574..26954+ >mRNA_H-elongata_contig102.181.1 ID=mRNA_H-elongata_contig102.181.1|Name=mRNA_H-elongata_contig102.181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig102:26574..26954+ (Himanthalia elongata Himel1 dioecious)back to top |