mRNA_H-elongata_contig10199.176.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: D8LKZ7_ECTSI (Methionyl-tRNA formyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ7_ECTSI) HSP 1 Score: 327 bits (839), Expect = 1.510e-108 Identity = 162/201 (80.60%), Postives = 181/201 (90.05%), Query Frame = 1 Query: 16 AGVKHKKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDGTVK 618 A V+ KKVVFLGTP+IAASSL LLL+ASRQG+GGGFDVVRAVSNPPAR GRKKVLQP VQA+A+SEG+ VMTP +ARDE FLA LEEL PDLCITAAYGQFLP+RFLDIPKFGTLNVHPSLLP YRGASPVQRCLEAG+ ETGVTVAFTVLKMDAGP+VRQ VR+L G+EK PELLQELF +GT++LI+CL +WD TV+ Sbjct: 98 ANVERKKVVFLGTPEIAASSLGLLLEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSAVQALADSEGITVMTPGTARDEEFLAGLEELQPDLCITAAYGQFLPRRFLDIPKFGTLNVHPSLLPLYRGASPVQRCLEAGDTETGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTKQLIECLPGVWDNTVE 298
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: A0A7S0L2B0_9EUKA (Methionyl-tRNA formyltransferase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2B0_9EUKA) HSP 1 Score: 269 bits (688), Expect = 1.150e-86 Identity = 134/201 (66.67%), Postives = 161/201 (80.10%), Query Frame = 1 Query: 16 AGVKHKKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDGTVK 618 A KKVVFLGTP +AA SL+LLL+ASR GRGGGFDV VS P AR GRKK+L P PV A+AE++GV V+ P +A++ GFLAE+EE++PDLCITAAYG FLP+RFL+I K GTLN+HPSLLP YRGA+P+QRCLEAG+ GV+V FTVLKMDAGPI+RQ R L+ E+ PELL ELF+ GTE L+D L S+WDGT K Sbjct: 49 AAADRKKVVFLGTPSVAARSLELLLEASRAGRGGGFDVAAVVSQPDARTGRKKLLTPSPVSAMAEAQGVRVLKPPNAKEVGFLAEIEEIAPDLCITAAYGCFLPRRFLEIGKCGTLNIHPSLLPLYRGAAPLQRCLEAGDEVGGVSVLFTVLKMDAGPILRQVRRPLATEEQAPELLLELFETGTELLVDALPSVWDGTYK 249
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: A0A7S2Y3A0_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3A0_9STRA) HSP 1 Score: 263 bits (671), Expect = 1.730e-83 Identity = 132/202 (65.35%), Postives = 158/202 (78.22%), Query Frame = 1 Query: 7 ETPAGVKHKKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAEL-EELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDG 609 E G K+VVFLGTP +AA SL+LLLDAS+ GRGGGF+V V+ PPAR GRKK L P PV +AE++G+PV+TP A+DE FL L E+++PDLCITAAYGQFLP +FL+IPKFGTLN+HPSLLP YRGASPVQR L+ G ETGV+V FTVLKMDAGPIVRQ L G E+TP+LL LF+ GT+EL+D L S+W G Sbjct: 87 EATEGSDPKRVVFLGTPPVAARSLELLLDASKSGRGGGFEVSAVVTQPPARSGRKKRLTPSPVHQLAEAQGIPVLTPEKAKDEDFLQALREDINPDLCITAAYGQFLPTKFLNIPKFGTLNIHPSLLPLYRGASPVQRSLQDGVAETGVSVLFTVLKMDAGPIVRQPRITLDGDEQTPDLLLRLFELGTKELVDALPSVWSG 288
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: R1CZB6_EMIHU (Methionyl-tRNA formyltransferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZB6_EMIHU) HSP 1 Score: 261 bits (667), Expect = 7.150e-83 Identity = 131/200 (65.50%), Postives = 158/200 (79.00%), Query Frame = 1 Query: 31 KKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEEL------IDCLSSIWDGT 612 ++VVFLGTP +AA SL+LLLDAS QG GGGF+V VS PPAR GRK L PVQ +AE+ G+ ++TP SA++E FLA L+EL PDLCITAAYG FLPQRFLDIP+FGTLNVHPSLLP YRGA+P+QRCLEAG+ GV+VAFTVLKMDAGP++RQ+ R L G E+ P LL ELF++GTE L +D L S+WDG+ Sbjct: 37 RRVVFLGTPAVAARSLELLLDASAQGGGGGFEVAAVVSQPPARSGRKMKLTASPVQTLAEARGIELLTPASAKEEAFLARLDELQPDLCITAAYGCFLPQRFLDIPRFGTLNVHPSLLPLYRGAAPLQRCLEAGDAVAGVSVAFTVLKMDAGPLLRQEERPLVGDEQEPPLLLELFERGTEPLEAEDLLLDALPSVWDGS 236
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: A0A835YXF4_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXF4_9STRA) HSP 1 Score: 257 bits (656), Expect = 3.960e-82 Identity = 125/205 (60.98%), Postives = 153/205 (74.63%), Query Frame = 1 Query: 4 TETPAGVKHKKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDGTVK 618 +++PA KKVVFLGTPD+AA SL LLL+AS +G GGGFD+ V+ PPAR GR K + P V +A+ G+PVM P ARD FL L EL PDLCITAAYGQFLPQ+FLDIP+ GTLN+HPSLLP+YRGASPVQRCL+AG+ TGVT+ FT LKMD+GP++RQ+ R L G EK P LL+ELF G L+ L +WDG+ + Sbjct: 4 SDSPAA--RKKVVFLGTPDVAAHSLSLLLEASSKGEGGGFDISAVVTQPPARTGRGKKVLPSAVHQLADQHGLPVMVPERARDPEFLEALRELGPDLCITAAYGQFLPQKFLDIPRHGTLNIHPSLLPKYRGASPVQRCLQAGDAVTGVTILFTELKMDSGPVLRQRSRALRGDEKAPALLRELFADGAAALVGALPEVWDGSAQ 206
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: A0A6S9KXU3_HETAK (Methionyl-tRNA formyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KXU3_HETAK) HSP 1 Score: 251 bits (641), Expect = 1.940e-79 Identity = 120/197 (60.91%), Postives = 151/197 (76.65%), Query Frame = 1 Query: 28 HKKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDGTVK 618 KKV+FLGTPD+AA +L LL AS +GRGGGFD+ V+ PPA GRKK L P PVQ +AE +G+ V+TP A+D+ F+ L ++ PDLCITAAYGQFLP +FL+IPKFGTLN+HPSLLPR+RGASPVQR LEAG+ TGV+V FTVLKMDAGPI + +G E+ P LL+ LF GT+ L++ L ++WDGT+K Sbjct: 56 RKKVIFLGTPDVAAQTLNRLLKASEEGRGGGFDISAVVTQPPAPAGRKKKLTPSPVQVLAEEKGLIVLTPEKAKDDNFIETLTQIGPDLCITAAYGQFLPTKFLNIPKFGTLNIHPSLLPRWRGASPVQRALEAGDAVTGVSVLFTVLKMDAGPIAKSIEYTCTGDEQAPWLLEHLFGLGTDGLVEVLPAVWDGTIK 252
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: W7T6E6_9STRA (Methionyl-tRNA formyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6E6_9STRA) HSP 1 Score: 251 bits (640), Expect = 7.220e-79 Identity = 124/196 (63.27%), Postives = 150/196 (76.53%), Query Frame = 1 Query: 31 KKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDGTVK 618 K+VVFLGTPD+AA +L LL AS+ GRGGGF++V V+ PPA GRK L P PVQ +AESE VPV+ P A+D FL+ LE L+PDLCITAAYG FLP +FL IP++GTLN+HPSLLP+YRGASPVQR L+AG+ TGV+V FT LKMDAGP++ Q L G EK PELLQ LF GTE L++ L S+WDGT + Sbjct: 81 KRVVFLGTPDVAALTLSRLLAASKDGRGGGFEIVSVVTQPPAPSGRKLKLTPSPVQTLAESEKVPVLCPDKAKDPIFLSALETLAPDLCITAAYGNFLPSKFLAIPRYGTLNIHPSLLPKYRGASPVQRTLQAGDAVTGVSVLFTELKMDAGPLLAQVPYPLRGEEKAPELLQTLFTAGTEALLEALPSVWDGTAR 276
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: A0A7S1XQ41_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQ41_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.660e-74 Identity = 120/197 (60.91%), Postives = 149/197 (75.63%), Query Frame = 1 Query: 31 KKVVFLGTPDIAASSLKLLLDASRQGRGGG-FDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDGTVK 618 KKVVFLGTPD+AA SL++LLD S +G G +++V V+NPPAR GR K + PV +AE G+ +TP SA+D FL ELE + DLCITAAYGQ+LP+RFL PKFGTLNVHPSLLPR+RGASPVQR LEAG+ TGV+V FTV KMDAGPI+ Q R L G E+ PELL ELF++GT L+D L+ ++DG+ + Sbjct: 5 KKVVFLGTPDVAARSLEILLDRSAEGAAAGLYEIVGVVTNPPARKGRGKKIVASPVGTLAEERGLKCLTPASAKDAEFLDELEAMGVDLCITAAYGQYLPKRFLATPKFGTLNVHPSLLPRWRGASPVQRSLEAGDETTGVSVLFTVTKMDAGPILAQADRTLGGDERAPELLMELFEEGTNLLVDNLAGVFDGSAE 201
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: A0A0G4EPG3_VITBC (Methionyl-tRNA formyltransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPG3_VITBC) HSP 1 Score: 238 bits (606), Expect = 6.030e-74 Identity = 120/200 (60.00%), Postives = 149/200 (74.50%), Query Frame = 1 Query: 4 TETPAGVKHKKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIW 603 TE GV +KVVFLGTPD+AA L+ + A+++ GFD++ V+NPPA VGRK+ + P PVQA AE G+PV P DE FL E+E LSPDLCITAAYG FLPQRFLDIP++GTLN+HPSLLP+YRGA+PVQR LEAGE TGV+V TVLKMDAGP+++Q L+G E P+LL LF+ GT+ L+D L S+W Sbjct: 53 TEGAEGVVRRKVVFLGTPDVAALCLQRIHKAAQEDSS-GFDLMGVVTNPPAPVGRKRTVVPSPVQAYAEENGLPVWAPDKPSDEAFLNEMEALSPDLCITAAYGGFLPQRFLDIPEYGTLNIHPSLLPKYRGAAPVQRALEAGEAVTGVSVVRTVLKMDAGPVLKQIEYPLTGDETCPQLLHTLFELGTDALLDLLPSVW 251
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Match: A0A8J5X4E8_DIALT (Methionyl-tRNA formyltransferase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4E8_DIALT) HSP 1 Score: 236 bits (602), Expect = 1.730e-73 Identity = 125/201 (62.19%), Postives = 148/201 (73.63%), Query Frame = 1 Query: 10 TPAGVKHKKVVFLGTPDIAASSLKLLLDASR-QGRGGGFDVVRAVSNPPARVGRKKVLQPCPVQAIAESEGVPVMTPTSARDEGFLAELEELSPDLCITAAYGQFLPQRFLDIPKFGTLNVHPSLLPRYRGASPVQRCLEAGEPETGVTVAFTVLKMDAGPIVRQKVRDLSGAEKTPELLQELFQQGTEELIDCLSSIWDG 609 TPA ++VVFLGTP +AA SL++LLDA+R F+VV VS PPA GRKKVL PV A+A++ GV V+TP SARD FL ELE + DLC+TAAYG FLP RFL IP GTLN+HPSLLPR+RGA+PVQR LEAG+ TGVTV FTVLKMDAGPIVRQ+ L G E+ PELL+ LF+ G EL+DCL +W G Sbjct: 65 TPA----RRVVFLGTPAVAAHSLEMLLDAARPHAPDSTFEVVAVVSQPPAPAGRKKVLTNSPVHALADARGVRVLTPKSARDGAFLDELEAMGIDLCVTAAYGCFLPARFLAIPSCGTLNIHPSLLPRWRGAAPVQRTLEAGDAVTGVTVLFTVLKMDAGPIVRQRTLPLRGDEQCPELLRNLFEIGCHELLDCLPDVWSG 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10199.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10199.176.1 >prot_H-elongata_contig10199.176.1 ID=prot_H-elongata_contig10199.176.1|Name=mRNA_H-elongata_contig10199.176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp MTETPAGVKHKKVVFLGTPDIAASSLKLLLDASRQGRGGGFDVVRAVSNPback to top mRNA from alignment at H-elongata_contig10199:8287..9057+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10199.176.1 ID=mRNA_H-elongata_contig10199.176.1|Name=mRNA_H-elongata_contig10199.176.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at H-elongata_contig10199:8287..9057+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10199:8287..9057+ >mRNA_H-elongata_contig10199.176.1 ID=mRNA_H-elongata_contig10199.176.1|Name=mRNA_H-elongata_contig10199.176.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig10199:8287..9057+ (Himanthalia elongata Himel1 dioecious)back to top |