Homology
BLAST of mRNA_H-elongata_contig10199.175.1 vs. uniprot
Match:
D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)
HSP 1 Score: 330 bits (845), Expect = 2.790e-106
Identity = 163/233 (69.96%), Postives = 190/233 (81.55%), Query Frame = 2
Query: 275 LPEQPTNAADLARMEREYYYKYN-------QKEAKRLGELKKQLEDLPRQRQCHRYRWTQTEKTFDVEIPMLKACEDKDLYLVVEKDQFQVAIKTDDSFGAITGVFPGDVDASKSSYRIHSRNDEPYIHVEIAKMASPGVYEFWHELLQGEVESPTIRFAGTTRRYTWKQNSETVEVMIPVPNNATKRKTRLDLDKTGERLHLSLTSKPDFEPLEGKFKGLISPLDSVWMLDE 952
+PE P +L R+EREYY + Q++ RL EL+ L DLP QRQCHRYRWTQTE TFDVEIPMLKAC D+DLYLVVEKDQ QVAIKTD+SFGAITGVFPGDVDA S+RIHSR +EPYIH+EI K+ +PG+YEFWHELLQGE ESPTIRF G T RY+WKQN+ET+E+ IPVP++ TKRKT LDLD G+R+H+S +++PDFEPLEGKFKGLISPLDSVWML E
Sbjct: 8 IPEDPN---ELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237
BLAST of mRNA_H-elongata_contig10199.175.1 vs. uniprot
Match:
A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)
HSP 1 Score: 176 bits (445), Expect = 7.790e-47
Identity = 99/270 (36.67%), Postives = 146/270 (54.07%), Query Frame = 2
Query: 299 ADLARMEREY-YYKYNQKEAKRLGELKKQLEDLPRQRQCHRYRWTQTEKTFDVEIPMLKACEDKDLYLVVEKDQFQVAIKTDDSFGAITGVFPGDVDASKSSYRIHSRND-EPYIHVEIAKMASPGVYEFWHELLQGEVESPTIRFAGTTRRYTWKQNSETVEVMIPVPNNATKRKTRLDLDKTGE--------------RLHLSLTSKPDFEPLEGKFKGLISPLDSVWMLDE-GESGKVLALTIKKRRGPKDTTV-WWSGVLEGDDKW 1054
AD +ERE +YK + E K + ++P QR+CH+YRW QT + VE+P+ +AC+ +DL V+ + Q++I++D +F + G FPG VD S+Y +HS + Y+ + + K+A PG E W+ LL+GE +PT+RF G TR Y W Q ++V VP T TR+D + G RL LS+ P+ E +F+G I D WMLDE G+ GK L++ + KR P V WW G+ E +D W
Sbjct: 12 ADAEALERERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKR--PSGAGVPWWGGLFEHEDGW 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10199.175.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.79e-106 / Id = 69.96 Expect = 7.79e-47 / Id = 36.67 Sequence D8LL06_ECTSI A0A836CLX2_9STRA
Match Name E-value Identity Description
D8LL06_ECTSI 2.790e-106 69.96 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A836CLX2_9STRA 7.790e-47 36.67 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 61.2 Seed ortholog evalue 1e-06 Seed eggNOG ortholog 5888.CAK60670 Preferred name nudc GOs GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0005856,GO:0006457,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007097,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0016043,GO:0022402,GO:0030473,GO:0030705,GO:0031505,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046907,GO:0048285,GO:0051082,GO:0051179,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0072384,GO:0098813,GO:0099111,GO:0140014,GO:1903047 EggNOG free text desc. N-terminal conserved domain of Nudc. EggNOG OGs 3ZAZE@5878,KOG2265@1,KOG2265@2759 COG Functional cat. T Best tax level Ciliophora Best eggNOG OG NA|NA|NA Hectar predicted targeting category signal anchor Ec32 ortholog description HSP20-like chaperone Ec32 ortholog Ec-11_006260.1 Exons 6 Model size 1851 Cds size 999 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929559.4360843-UTR-H-elongata_contig10199:483..541 1622929559.4360843-UTR-H-elongata_contig10199:483..541 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig10199 484..541 + 1691679070.0829434-UTR-H-elongata_contig10199:483..541 1691679070.0829434-UTR-H-elongata_contig10199:483..541 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig10199 484..541 + 1622929559.5599978-UTR-H-elongata_contig10199:5016..5810 1622929559.5599978-UTR-H-elongata_contig10199:5016..5810 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig10199 5017..5810 + 1691679070.1510615-UTR-H-elongata_contig10199:5016..5810 1691679070.1510615-UTR-H-elongata_contig10199:5016..5810 Himanthalia elongata Himel1 dioecious UTR H-elongata_contig10199 5017..5810 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929559.459866-CDS-H-elongata_contig10199:541..793 1622929559.459866-CDS-H-elongata_contig10199:541..793 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 542..793 + 1691679070.0944207-CDS-H-elongata_contig10199:541..793 1691679070.0944207-CDS-H-elongata_contig10199:541..793 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 542..793 + 1622929559.4763675-CDS-H-elongata_contig10199:1910..2162 1622929559.4763675-CDS-H-elongata_contig10199:1910..2162 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 1911..2162 + 1691679070.1033587-CDS-H-elongata_contig10199:1910..2162 1691679070.1033587-CDS-H-elongata_contig10199:1910..2162 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 1911..2162 + 1622929559.5006576-CDS-H-elongata_contig10199:3053..3159 1622929559.5006576-CDS-H-elongata_contig10199:3053..3159 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 3054..3159 + 1691679070.1123395-CDS-H-elongata_contig10199:3053..3159 1691679070.1123395-CDS-H-elongata_contig10199:3053..3159 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 3054..3159 + 1622929559.5198085-CDS-H-elongata_contig10199:3398..3511 1622929559.5198085-CDS-H-elongata_contig10199:3398..3511 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 3399..3511 + 1691679070.1253967-CDS-H-elongata_contig10199:3398..3511 1691679070.1253967-CDS-H-elongata_contig10199:3398..3511 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 3399..3511 + 1622929559.5370517-CDS-H-elongata_contig10199:4406..4572 1622929559.5370517-CDS-H-elongata_contig10199:4406..4572 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 4407..4572 + 1691679070.1357348-CDS-H-elongata_contig10199:4406..4572 1691679070.1357348-CDS-H-elongata_contig10199:4406..4572 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 4407..4572 + 1622929559.548529-CDS-H-elongata_contig10199:4906..5016 1622929559.548529-CDS-H-elongata_contig10199:4906..5016 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 4907..5016 + 1691679070.1431174-CDS-H-elongata_contig10199:4906..5016 1691679070.1431174-CDS-H-elongata_contig10199:4906..5016 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig10199 4907..5016 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10199.175.1
>prot_H-elongata_contig10199.175.1 ID=prot_H-elongata_contig10199.175.1|Name=mRNA_H-elongata_contig10199.175.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
MEGNIRCRGSPMGLFVIVVILMGIISYTSAFLAPVVSWRIKVGGSAGSDA back to top mRNA from alignment at H-elongata_contig10199:484..5810+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10199.175.1 ID=mRNA_H-elongata_contig10199.175.1|Name=mRNA_H-elongata_contig10199.175.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5327bp|location=Sequence derived from alignment at H-elongata_contig10199:484..5810+ (Himanthalia elongata Himel1 dioecious)AGTTCCCCCGCGCTTCCAGGATGCTGTGTATGAACAGCATCACACCATCC
GAGTGGAG ATGGAAGGGAACATAAGATGTCGGGGTTCACCCATGGGGCTA
TTTGTCATTGTGGTCATCCTTATGGGGATTATTTCATATACATCTGCATT
CCTGGCTCCAGTGGTGTCCTGGAGAATCAAGGTTGGTGGGTCCGCGGGAT
CAGATGCACAACAGACACACCGTTACCGCTGCTCCTGCAGCACCAACATG
ACCTCGGGAAAACATGAAGGGAGTTTGCCGGAACAGCCGACCAATGCCGC
TGATTTAGCG GTAAGTATGTAGTGGATGAATAGGAAAATTAATTCTCGCG
TGACCTCCCTCCACAAGCCATGATTCATGAATACTTGTGGTACAACGGTT
TTTAGTGCTGTTCAACAGCCACAATGGTCCGTAACGGTAAGGTGGTGGTC
GACTTTGACCTCTCTTGACGTCGCAGCAGCAGTTGACCACACAAAAACTT
TCCTTAGGTAAAAAGAGTTACAGCGTGGGCTGTTATGCCCTGGTAATCCA
ACTGAGAATCTACAAAGCCCAGCCATAGCCTTGGGATATCTCGAGTTCGA
TTCTCAAGGAGAACATTGGTGGGTGAAGTTCAGACTGCCTCCAATACTAT
ATCTGCAAATGTCCACTCTACCAATAATGGGTGGGAAAAAAGAGGCGCAC
AATAATTGGTCCATGGGGTTACCTGAATAGGCTGCATCTGCTACTCAAGC
TACCTTGAGGACTGCTGGCTCAGTGTCGGTGGACTCTCGGTGGTAAACGC
CATCGGTAAGCAATTGCGTGACCTGATGAAATCGGGATTGGCCCGATGGC
GGTTGACGGTAAAAATGGACGCCGTCGCGGAAAACGAGAGGATCGCGGGA
GCACGCACCAGATTTAGTCTGGGTTAAGAAAATGGGCAGGCTGACGCCGG
ACGGGACTGCCGAGCCTGTCTCGCGAGATTAAATTCTCAGGCGTGAACGG
GGGCAGGAAAAAAATGATTTTCTTGTTCAGCTGACCATGAACAGGAGGCA
ACCAAATCCGGTTGATCCTTATATGTGATAATGAATAATGATGACCACAC
AGACATTGAACTTTGACTCACAGGTTGAACGGGTGATAGATCCGTCCAAC
GAATAAAAGCGCGGTCGTTAGTCGGAAAGAGAAGGGTAGTTTCCCTGGAA
CACCAGGCGGGATGTTTAGATGTGTTGAAAGTGGGATTGGTAACCTAGTA
CATTGAACGTAAATACTCCATCGGCAGAAAGTGGGAGAGAAAGCAGTTCA
GGAGGTACTGCAGATCTGCGATATGATGCGCTGTACGGAAATGTAAACGG
ACGACATCGAACAGCTGCACTGATCCTCTTGGAAGAAATCCCTGTACAAG
GGTTCCCGCCTGTGCCGCACTTCGCAGAGGATGGAGCGGGAGTATTACTA
CAAGTACAACCAAAAGGAGGCAAAAAGGCTCGGAGAGCTGAAGAAGCAAC
TAGAGGACCTGCCGAGGCAGCGGCAGTGCCACAGGTACCGATGGACTCAG
ACGGAGAAGACGTTTGACGTGGAAATCCCCATGCTCAAGGCGTGCGAGGA
TAAGGACTTGTATCTCGTCGTGGAGAAGGACCAGTTTCAGGTGGCCATCA
AAACAGACGACTCATTTGGGGCCATCACG GTGAGTGCCAAGAGATCAGGA
TCAAAGCTCCTACCGCTGCTGCCTTGATTGACAAGTACAGCAAAATCATC
TCGCGAGGATATTTCGATCAAAACCGCCCGTGAATTGAGGCCGGCGCCCT
TTATGTCATCGCTGCTGTGTACTTTATGAGGTCGTTGGAATCTTCGCGCC
GACACACGAGCAGATCTTTTCTTTTCGTATGATTACATACACACACTATT
CTCCGGTGACACCATCGTAGGCTAGGGTTTTCTCGGGGAGGGGTTCCAAT
ATAAAATATTGCCTTCGTGTAGTTCTTCGGGAGTTGGTAAGGGCTGCAGC
GGTGTGTTCCTTGGGCGACTTCTTCTAGAGTGTTTATATCCGTTGAGCGC
CGTTCTGGGTCCCCCCTGCGCAGCGTATCAATCAATGCGCTCATAACTGA
ATCTAAAGAGCACTCTATTACTTCGCCACCCCGCCGCCGAAGAAGTGTGT
GGTAGTAACAGTGGTACTCATGTAAGCCATCGATCATTAGTTCAAATCTT
ACCAGGATGGTTCTTTATTTATGTTCTGTACTGTATAGGCTATATAATAA
TAGGCTATAATACTATAATAGCCGAAAACGTGAGAAATTATTGTCTGAGG
AGTGTTGAATTATCATCGCGATAAAACAAATGCAATAGTGCAATAGTAGG
CTTGAGGTTAGGGTTAGGGTAAGGGATAGTTGGCCCCTTACGACCACAGG
TGAAATGAACAACGTTGCAGTAGATGGGTTTGGTAGTGAGAATGAAAAAT
GATAATCCCAAGGTTCTCCCAAAATGGTCCCAAGTTGCAATATCTTGACG
TGGTCCGTGAATACGCAGTATCTGTAAACGCTGAATCCCCATCGATTTCG
TCTTAACTCGAACGGTGCAGGGTGTATTTCCTGGAGACGTCGATGCATCG
AAGAGCAGCTATCGCATTCACAGCCGCAACGACGAGCCCTACATCCACGT
CGAGATTGCCAAGATGGCGTCGCCAG GTGCTGCTATTTCTGATGATAATA
AATGACGTATGCAAGCCTTTTTCTACGGGTGCTTCATGGAACGTCGCTTT
TTCAATTACCGTTGTCGCTTATAGATATATATTTTTTAGTTTGCCCCACC
GTTCGGGCGTGTCCCGAAACGTTGTACGAGTACTATCAACATGCCTTTAC
CATATACAAAGCCATAGCGACAAGGTCTCAAGGGCGCGCGTGCCCATCTT
TCGTGCGCCTCTTAGGAGTGTACGAGTTTTGGCACGAGCTTCTCCAGGGA
GAAGTCGAGAGCCCTACGATCCGATTCGCCGGGACGACGAGGCGGTATAC
TTGGAAACAGAATTCCGAAACCGTTGAG GTTAGTCGACCAATGAGATATG
GCCAGTTCTACGATTAATGACATCATGAATGCTTGAAGAGGGGAACGGGC
GTCCCAAACTCACTAGGAGAGAAGGATGATGAAAGCTATCGCCTGGAAAC
ATTGCCGTTATGCTATTTTGCTAGGGGGCACTCTTATAGCACCTGGAGTA
GTGACTCAATCGCGATCTGAGTGAATCTGCTTGGGGTTGAGTAGCCAGGA
ACCCCAGTGTTTGGACGTTTGTATCATACAACATATGTTGGCGTAGTGAT
AGTGAACTATTTGACATTGTATACTTCATGGTATTAGTAGTACTATTAAG
CTCTATTAACATAACACGATGCGGACGGTTGGGTTAGGGTTAGCAGTCTA
ATGTCCATTGTACTTCTGTCTGTTTCATTCGTGGGCGCTCCATTGAATCT
CTTTGTCTGTAATGAAATGTAATGATAACACCTCTACAAATAATAATCCC
TCCACAAAGTGCATTTTGTATTAGTACGCTTGGCGATTTTCAGGTTTTTC
TATTTTTTTTCTTTCTGTTTTTGTGTTTCTTCCTTCATTTCCCTCCACTT
CACTCAGCGAATCACGATCGAGCGGAGTTGGTTGGCAATAGATCGCATCG
GCATCATGCTAGCTCGACGATGATAACGACAGGAACAGCGACAACCCCAT
CCACGCGATATCGACATCATCCTCAGACACGCGAGGCAGACGGCGAACTA
AGCTCTTCTAGCGTACAGTATAATTCAAGCAAAGTATTAGTATGCTATGT
TATATTGAGAAGTCCCCTTTGAAGTCTGGTACCGATATGCGATATATTAG
TATTAATATGCGATATATTCCCTCGGGACTTTTATGTCTTGTGATGGTTT
GTCCGTACGGCGGGGGTCCGGAGGTGATGATTCCCGTTCCTAACAACGCT
ACGAAGCGAAAGACGAGGCTAGATTTGGACAAGACGGGCGAAAGGCTGCA
CCTATCCCTGACAAGCAAGCCGGACTTCGAGCCTCTGGAGGGAAAGTTCA
AGGGACTCATAAGCCCGCTGGATTCCGTGTGGATGCTCG GTGAGTTGTGG
CAGTCAAGGCGAGGTTTTATCGAGGCGTTGTCGCTTTCTCTTAGATCAGT
CAGTGGGGATTGAACGTGTAGACCTCAGCGCGCAATCCAGATCCATCATC
CCGTCAACGAGCAATTCAGATCCAGGAAGCCCCCTCTGCGGAGAGCGAAA
AGCGCAAGGGTGTCATTTTCGCGAACTCTCTTTTTTTCTTGTAATGTTTT
GAATCATCTGTAAAGCTATATAAGAAATATATATATATATAACGTGATCT
TCAGAGAGACGCGCGAAAAATAACGCCCTCCGTGTGGTGAAAACCAACAC
GTCCATACGCCCGACACTTGCAGACGAGGGAGAAAGCGGTAAGGTACTGG
CTTTGACCATCAAAAAGCGACGGGGCCCCAAAGACACCACCGTATGGTGG
AGTGGCGTCCTGGAAGGCGATGACAAATGGTAA TCGTCCGCCTGTCTCTT
GAGGGTACCAATCGCTTGGTACTTAGTTGCAAGTACTTCGGTAATCAATA
ATGATATATTGATGCTTGGTGCGCGATTGGTTCGGCATATTTACGCAACA
GAGCATGACGCAATTTAGAAACTCTTGATGATGTGTTAGCTCCGACTGTG
TTTCAGCGTGCGCTTGCTGCCAAGGCGCCAAGGGCTTTCAGGAGCTGTCG
CTGCGTCCATAGATTCGCTCAACTCGCGAAATGTAGCTTAGCTCGAGTAT
GGGTACGTAACCGGGGGGAGAAAGCTACCGTGTGAGATGCTCCACACCGT
CAGCGTTTTCGTGTGAGGTACTCCGCACCGTCGGTGTTTTCGTGTGAGGG
GCTCCACACCGCCGGCGTTTTCGTGATAGGGTCTCCAGATCACATGCGTT
TTCGTGCTAGGGGCTCTATATCACAGACGTTTTCGTGCGAGGTGCTCCAC
ACTGCAGGCGTATTTACACCCACGAGATGCTGACGGTGGTTCAGAAATAA
TATACATTGTTGGCGAGGCACACGGAATGAGAGCTTGAGGTGATTCGTCC
AAGCTCAGGTTATGTTTGGAAGTGCAGGTGAACGTGCAATCTGCTGTCCT
TGCAATCGATTACAGCGATGGTGGCACATCCTCGATGAATCTCAGCATAT
CCAATCGTAGACAAAATATCTACGGGGGCTAACCAACGTTGTCTGTGAAG
TAGAGTAGTGTATACAAGCTCCAGGAGGTCTCCAAGACCTGCACTGGCGG
TCGACATCCCCCAATATAGCGACGCAC back to top Coding sequence (CDS) from alignment at H-elongata_contig10199:484..5810+
>mRNA_H-elongata_contig10199.175.1 ID=mRNA_H-elongata_contig10199.175.1|Name=mRNA_H-elongata_contig10199.175.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig10199:484..5810+ (Himanthalia elongata Himel1 dioecious) back to top