mRNA_H-elongata_contig101941.172.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 107 bits (268), Expect = 4.660e-25 Identity = 59/118 (50.00%), Postives = 83/118 (70.34%), Query Frame = 1
Query: 1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
+AL+R +VTRY+ SSQ +DRL Q ++ + VE +KKV+QDV TRW ST + RLL LR PI++HE D + PLLK +DW VL ++ P+ +PF+ +Q E K VTVSL++ +I DL
Sbjct: 166 LALARRVVTRYNMSSQASDRLEQ-MRDIVQVE-RKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADL 281
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.300e-23 Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
+AL+RG+VTRY+ SSQ +DRL Q V + VE +K V+QDV TRW ST + RL+ LR PI++HE D PLLK +DW VL ++ +L+PFM Q LE K VTV L+ +I DL
Sbjct: 122 LALARGVVTRYTISSQASDRLEQ-VCDIVQVE-RKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADL 237
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.190e-16 Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
+AL RG+VTRY+ SSQ ++RL Q + VE +KKV+QDV TRW ST E D + PLL +DW VL ++ P+L PFM Q LE K VTVSL+ +I DL
Sbjct: 110 LALPRGVVTRYTMSSQASNRLEQMCDI-VQVE-RKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADL 209
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 2.140e-10 Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1
Query: 1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVT 129
M L+RGLVTRY TSSQ ADRL QFVKTYLGV+NK+ VIQDVVT
Sbjct: 158 MVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKR-VIQDVVT 199
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI000A2C0776 (zinc finger BED domain-containing protein 4-like n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI000A2C0776) HSP 1 Score: 62.0 bits (149), Expect = 8.690e-9 Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 13 RGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEA-DKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
+ +V + S+ ++L + K G+E KK+IQDVVTRW+ST ++ R + L++ I +K P+L +W++ + + VL PF + L G KYVT S I + + L
Sbjct: 320 KSVVAFFKRSTTCNEKLLNYQKNN-GIEQPKKLIQDVVTRWNSTFYMLERYVLLKDAIKTTIVLINKDLPILSENEWLICEEVVEVLRPFEEITRELSGEKYVTASKIPVIVKGL 433
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI000B938B10 (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B938B10) HSP 1 Score: 59.3 bits (142), Expect = 6.540e-8 Identity = 32/97 (32.99%), Postives = 55/97 (56.70%), Query Frame = 1
Query: 76 KTYL---GVENKKKVIQDVVTRWSSTCTIMGRLLELREPI-SKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
KTY G++ +KK+IQDV TRW+ST ++ R +E+ + I D L +EDW++L + +L+PF + + +KY SL+++ + L
Sbjct: 60 KTYQINNGIKERKKLIQDVQTRWNSTYYMINRFVEMEKSIRGTLGLLDNAPDTLSSEDWLILQDLIKILKPFDEATKAISRQKYTIASLVIVIVQGL 156
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI001A9D9B41 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9D9B41) HSP 1 Score: 59.3 bits (142), Expect = 7.050e-8 Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 100 KKKVIQDVVTRWSSTCTIMGRLLELREPISKH-EEADKLE---PLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIV 336
KKK+ QD+ TRW+ST ++ LLEL+EP+ + E++ ++ P L DW +L+ + VL+P + LL G KYVT S+++
Sbjct: 116 KKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLI 198
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI001AD6D62A (E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001AD6D62A) HSP 1 Score: 59.3 bits (142), Expect = 7.580e-8 Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 100 KKKVIQDVVTRWSSTCTIMGRLLELREPISKH-EEADKLE---PLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIV 336
KKK+ QD+ TRW+ST ++ LLEL+EP+ + E++ ++ P L DW +L+ + VL+P + LL G KYVT S+++
Sbjct: 321 KKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLI 403
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: J9KUZ2_ACYPI (BED-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KUZ2_ACYPI) HSP 1 Score: 53.9 bits (128), Expect = 5.740e-6 Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 1
Query: 13 RGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
+ +V + S++ ++L Q ++ LG K+IQDVVTRWSST + R EL+ PI + L + DW ++ +L+ F + + K VT+S +LF L
Sbjct: 315 KSIVEYFKRSTRATEKLNQ-MQEQLGYSPVHKLIQDVVTRWSSTFHMFQRFFELKTPILSSLADLNYDVSLTSGDWQIISKSCDILKRFEEITLEMSSEKGVTISKTILFTQAL 427
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI00046B7842 (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI00046B7842) HSP 1 Score: 53.9 bits (128), Expect = 5.900e-6 Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 1
Query: 13 RGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
+ +V + S++ ++L Q ++ LG K+IQDVVTRWSST + R EL+ PI + L + DW ++ +L+ F + + K VT+S +LF L
Sbjct: 274 KSIVEYFKRSTRATEKLNQ-MQEQLGYSPVHKLIQDVVTRWSSTFHMFQRFFELKTPILSSLADLNYDVSLTSGDWQIISKSCDILKRFEEITLEMSSEKGVTISKTILFTQAL 386 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101941.172.1 >prot_H-elongata_contig101941.172.1 ID=prot_H-elongata_contig101941.172.1|Name=mRNA_H-elongata_contig101941.172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTback to top mRNA from alignment at H-elongata_contig101941:985..1338+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101941.172.1 ID=mRNA_H-elongata_contig101941.172.1|Name=mRNA_H-elongata_contig101941.172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig101941:985..1338+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101941:985..1338+ >mRNA_H-elongata_contig101941.172.1 ID=mRNA_H-elongata_contig101941.172.1|Name=mRNA_H-elongata_contig101941.172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig101941:985..1338+ (Himanthalia elongata Himel1 dioecious)back to top |