mRNA_H-elongata_contig101941.172.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101941.172.1
Unique NamemRNA_H-elongata_contig101941.172.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.660e-25
Identity = 59/118 (50.00%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
            +AL+R +VTRY+ SSQ +DRL Q ++  + VE +KKV+QDV TRW ST   + RLL LR PI++HE  D + PLLK +DW VL ++ P+ +PF+ +Q   E  K VTVSL++ +I DL
Sbjct:  166 LALARRVVTRYNMSSQASDRLEQ-MRDIVQVE-RKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADL 281          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.300e-23
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
            +AL+RG+VTRY+ SSQ +DRL Q V   + VE +K V+QDV TRW ST   + RL+ LR PI++HE  D   PLLK +DW VL ++  +L+PFM  Q  LE  K VTV L+  +I DL
Sbjct:  122 LALARGVVTRYTISSQASDRLEQ-VCDIVQVE-RKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADL 237          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.190e-16
Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
            +AL RG+VTRY+ SSQ ++RL Q     + VE +KKV+QDV TRW ST                  E D + PLL  +DW VL ++ P+L PFM  Q  LE  K VTVSL+  +I DL
Sbjct:  110 LALPRGVVTRYTMSSQASNRLEQMCDI-VQVE-RKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADL 209          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.140e-10
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1
Query:    1 MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVT 129
            M L+RGLVTRY TSSQ ADRL QFVKTYLGV+NK+ VIQDVVT
Sbjct:  158 MVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKR-VIQDVVT 199          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI000A2C0776 (zinc finger BED domain-containing protein 4-like n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI000A2C0776)

HSP 1 Score: 62.0 bits (149), Expect = 8.690e-9
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   13 RGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEA-DKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
            + +V  +  S+   ++L  + K   G+E  KK+IQDVVTRW+ST  ++ R + L++ I       +K  P+L   +W++ + +  VL PF +    L G KYVT S I + +  L
Sbjct:  320 KSVVAFFKRSTTCNEKLLNYQKNN-GIEQPKKLIQDVVTRWNSTFYMLERYVLLKDAIKTTIVLINKDLPILSENEWLICEEVVEVLRPFEEITRELSGEKYVTASKIPVIVKGL 433          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI000B938B10 (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B938B10)

HSP 1 Score: 59.3 bits (142), Expect = 6.540e-8
Identity = 32/97 (32.99%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   76 KTYL---GVENKKKVIQDVVTRWSSTCTIMGRLLELREPI-SKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
            KTY    G++ +KK+IQDV TRW+ST  ++ R +E+ + I       D     L +EDW++L  +  +L+PF +    +  +KY   SL+++ +  L
Sbjct:   60 KTYQINNGIKERKKLIQDVQTRWNSTYYMINRFVEMEKSIRGTLGLLDNAPDTLSSEDWLILQDLIKILKPFDEATKAISRQKYTIASLVIVIVQGL 156          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI001A9D9B41 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9D9B41)

HSP 1 Score: 59.3 bits (142), Expect = 7.050e-8
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  100 KKKVIQDVVTRWSSTCTIMGRLLELREPISKH-EEADKLE---PLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIV 336
            KKK+ QD+ TRW+ST  ++  LLEL+EP+ +  E++  ++   P L   DW +L+ +  VL+P +    LL G KYVT S+++
Sbjct:  116 KKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLI 198          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI001AD6D62A (E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001AD6D62A)

HSP 1 Score: 59.3 bits (142), Expect = 7.580e-8
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  100 KKKVIQDVVTRWSSTCTIMGRLLELREPISKH-EEADKLE---PLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIV 336
            KKK+ QD+ TRW+ST  ++  LLEL+EP+ +  E++  ++   P L   DW +L+ +  VL+P +    LL G KYVT S+++
Sbjct:  321 KKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLI 403          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: J9KUZ2_ACYPI (BED-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KUZ2_ACYPI)

HSP 1 Score: 53.9 bits (128), Expect = 5.740e-6
Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   13 RGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
            + +V  +  S++  ++L Q ++  LG     K+IQDVVTRWSST  +  R  EL+ PI         +  L + DW ++     +L+ F +    +   K VT+S  +LF   L
Sbjct:  315 KSIVEYFKRSTRATEKLNQ-MQEQLGYSPVHKLIQDVVTRWSSTFHMFQRFFELKTPILSSLADLNYDVSLTSGDWQIISKSCDILKRFEEITLEMSSEKGVTISKTILFTQAL 427          
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Match: UPI00046B7842 (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI00046B7842)

HSP 1 Score: 53.9 bits (128), Expect = 5.900e-6
Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   13 RGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCTIMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALLEGRKYVTVSLIVLFIHDL 354
            + +V  +  S++  ++L Q ++  LG     K+IQDVVTRWSST  +  R  EL+ PI         +  L + DW ++     +L+ F +    +   K VT+S  +LF   L
Sbjct:  274 KSIVEYFKRSTRATEKLNQ-MQEQLGYSPVHKLIQDVVTRWSSTFHMFQRFFELKTPILSSLADLNYDVSLTSGDWQIISKSCDILKRFEEITLEMSSEKGVTISKTILFTQAL 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101941.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JJV8_9PHAE4.660e-2550.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.300e-2350.85Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.190e-1644.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE2.140e-1081.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000A2C07768.690e-933.04zinc finger BED domain-containing protein 4-like n... [more]
UPI000B938B106.540e-832.99zinc finger BED domain-containing protein 1-like n... [more]
UPI001A9D9B417.050e-839.76E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ixodes s... [more]
UPI001AD6D62A7.580e-839.76E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapul... [more]
J9KUZ2_ACYPI5.740e-630.70BED-type domain-containing protein n=1 Tax=Acyrtho... [more]
UPI00046B78425.900e-630.70zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101941contigH-elongata_contig101941:985..1338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue4.3e-16
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.268952-CDS-H-elongata_contig101941:984..13381622929559.268952-CDS-H-elongata_contig101941:984..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101941 985..1338 +
1691679070.0440712-CDS-H-elongata_contig101941:984..13381691679070.0440712-CDS-H-elongata_contig101941:984..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101941 985..1338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101941.172.1prot_H-elongata_contig101941.172.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101941 985..1338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101941.172.1

>prot_H-elongata_contig101941.172.1 ID=prot_H-elongata_contig101941.172.1|Name=mRNA_H-elongata_contig101941.172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MALSRGLVTRYSTSSQMADRLAQFVKTYLGVENKKKVIQDVVTRWSSTCT
IMGRLLELREPISKHEEADKLEPLLKAEDWVVLDIIHPVLEPFMQTQALL
EGRKYVTVSLIVLFIHDL
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mRNA from alignment at H-elongata_contig101941:985..1338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101941.172.1 ID=mRNA_H-elongata_contig101941.172.1|Name=mRNA_H-elongata_contig101941.172.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig101941:985..1338+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCTGTCCCGCGGTTTGGTCACGCGGTACTCGACATCAAGCCAGAT GGCCGACCGGCTTGCGCAGTTCGTCAAGACCTACCTTGGTGTAGAGAACA AGAAGAAGGTGATCCAAGACGTGGTAACGAGGTGGTCGTCTACTTGTACA ATTATGGGGCGGCTGCTAGAGTTGAGGGAACCAATAAGCAAGCACGAGGA AGCGGACAAGCTGGAGCCGCTGCTGAAGGCTGAAGACTGGGTGGTACTTG ATATTATTCATCCGGTCTTAGAACCGTTCATGCAAACACAGGCTCTGCTG GAGGGCCGCAAGTATGTGACGGTTAGTTTAATTGTGCTATTCATCCACGA CCTC
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Coding sequence (CDS) from alignment at H-elongata_contig101941:985..1338+

>mRNA_H-elongata_contig101941.172.1 ID=mRNA_H-elongata_contig101941.172.1|Name=mRNA_H-elongata_contig101941.172.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig101941:985..1338+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCTGTCCCGCGGTTTGGTCACGCGGTACTCGACATCAAGCCAGAT
GGCCGACCGGCTTGCGCAGTTCGTCAAGACCTACCTTGGTGTAGAGAACA
AGAAGAAGGTGATCCAAGACGTGGTAACGAGGTGGTCGTCTACTTGTACA
ATTATGGGGCGGCTGCTAGAGTTGAGGGAACCAATAAGCAAGCACGAGGA
AGCGGACAAGCTGGAGCCGCTGCTGAAGGCTGAAGACTGGGTGGTACTTG
ATATTATTCATCCGGTCTTAGAACCGTTCATGCAAACACAGGCTCTGCTG
GAGGGCCGCAAGTATGTGACGGTTAGTTTAATTGTGCTATTCATCCACGA
CCTCATGGCTCTGTCCCGCGGTTTGGTCACGCGGTACTCGACATCAAGCC
AGATGGCCGACCGGCTTGCGCAGTTCGTCAAGACCTACCTTGGTGTAGAG
AACAAGAAGAAGGTGATCCAAGACGTGGTAACGAGGTGGTCGTCTACTTG
TACAATTATGGGGCGGCTGCTAGAGTTGAGGGAACCAATAAGCAAGCACG
AGGAAGCGGACAAGCTGGAGCCGCTGCTGAAGGCTGAAGACTGGGTGGTA
CTTGATATTATTCATCCGGTCTTAGAACCGTTCATGCAAACACAGGCTCT
GCTGGAGGGCCGCAAGTATGTGACGGTTAGTTTAATTGTGCTATTCATCC
ACGACCTC
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