mRNA_H-elongata_contig101910.168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101910.168.1
Unique NamemRNA_H-elongata_contig101910.168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: D7G1P2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P2_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 8.430e-57
Identity = 109/129 (84.50%), Postives = 118/129 (91.47%), Query Frame = 1 
Query:    1 SVKPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLRKQLKNQSDR 372
            S +PNREDSPL RKIRMLENRLDKAMIKYNEA SIRKTYEQI     EERVGFDN+LGAVERTLQAK+KDYEELLLLSGDANHAREVAQ+ELDR+R  YEEERRRRE+ELRE+HQVVQLRKQ+K Q+DR
Sbjct:  119 SQQPNREDSPLTRKIRMLENRLDKAMIKYNEAQSIRKTYEQIVKRLKEERVGFDNQLGAVERTLQAKIKDYEELLLLSGDANHAREVAQSELDRLRTDYEEERRRRESELRERHQVVQLRKQIKLQADR 247
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A7S1TV28_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV28_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.660e-47
Identity = 92/129 (71.32%), Postives = 111/129 (86.05%), Query Frame = 1 
Query:    1 SVKPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLRKQLKNQSDR 372
            S +PN+EDSP+ R IR+LENRLDKAMIKYNEA SI+KTY+QI     EERVGFDN++ ++ERTL AK +DY+ELLLLSGDANHAREVAQ EL+RVRK YE ER+RRE ELREKHQVVQ+RKQ+K + ++
Sbjct:  124 SRRPNQEDSPVMRNIRVLENRLDKAMIKYNEAMSIKKTYDQIVKRLQEERVGFDNQISSIERTLAAKNRDYQELLLLSGDANHAREVAQCELERVRKGYEAERKRREQELREKHQVVQMRKQMKERQEK 252
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A836CG60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG60_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.840e-45
Identity = 91/129 (70.54%), Postives = 109/129 (84.50%), Query Frame = 1 
Query:    1 SVKPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLRKQLKNQSDR 372
            + +P  ED+PL R IR+LENRLDKAMIKYNEA SIRKTYEQI     EERVGFDN+LGA+ERT+ AK KD+EEL+LLSGDANHAREVA  EL+RVR  YEEERRRR+AELRE+ QV  LR+Q+++++DR
Sbjct:  118 ATQPGHEDTPLTRHIRILENRLDKAMIKYNEAQSIRKTYEQIVRRLKEERVGFDNQLGALERTIGAKAKDHEELMLLSGDANHAREVAVAELERVRAGYEEERRRRDAELRERQQVATLRRQMRDRADR 246
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A7S3ZSK6_9STRA (Hypothetical protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSK6_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.900e-41
Identity = 84/116 (72.41%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:   19 EDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLRKQ 351
            ED+P+ R IRMLENRLDKA+IK+NEA SI++TYEQI     EER+GFD++L A+ERT  AK +DYEELLLLSGDANHAREVAQ+EL  VR  YEEERRRR+ ELRE+HQ+VQLRKQ
Sbjct:  124 EDTPVTRNIRMLENRLDKALIKFNEAQSIKRTYEQIVKRLREERIGFDHQLTALERTFAAKQRDYEELLLLSGDANHAREVAQSELSHVRNGYEEERRRRDLELRERHQMVQLRKQ 239
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A7S1CBH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBH4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.500e-40
Identity = 83/125 (66.40%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:    7 KPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLRKQLKNQS 366
            KPN EDSPL RKIR+LENRLDKAMIKYNEA SIRKTYEQI     EERVGFDN+L A+ERTL+AK  DYEELLLLSGDANHA+E+A  EL++V+   + +  RR+ ELREK  +VQ R  +K+++
Sbjct:   49 KPNTEDSPLTRKIRLLENRLDKAMIKYNEAQSIRKTYEQIVKRLEEERVGFDNQLAAIERTLKAKQHDYEELLLLSGDANHAKEMAIVELEKVKAFAKADHERRQRELREKDGLVQSRIDMKDKA 173
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A2D4C5M1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5M1_PYTIN)

HSP 1 Score: 144 bits (362), Expect = 2.170e-37
Identity = 84/129 (65.12%), Postives = 100/129 (77.52%), Query Frame = 1 
Query:    1 SVKPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLRKQLKNQSDR 372
            S KP+ ED+P  RKIRMLENRLDKAMIK+NEA SIRKTYEQI     EERVGFDN+L A+ER L AK  DYEELLLLS DA HARE+   EL++ R  YE+E+R+RE ELREK Q V++R ++ N+ DR
Sbjct:  766 SKKPSLEDTPETRKIRMLENRLDKAMIKFNEAQSIRKTYEQIVKRLKEERVGFDNQLAALERALAAKQHDYEELLLLSSDATHAREMILQELEKARGQYEDEKRQREKELREKQQYVKIRLEMSNRIDR 894
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A1V9Z8L8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8L8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.800e-37
Identity = 81/119 (68.07%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 SVKPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQL 342
            S KP+ ED+P  RKIRMLENRLDKAMIKYNEA SIRKTYEQI     EER+GFDN+L A+ER   AK  DY+EL++LS DA HA+E+ Q EL+RVR  YEEERR RE ELREK QVV++
Sbjct:  136 SRKPSMEDTPETRKIRMLENRLDKAMIKYNEAQSIRKTYEQIVKRLKEERIGFDNQLAAIERAAAAKNHDYDELVMLSNDAAHAKELTQLELERVRSNYEEERRLREKELREKQQVVKM 254
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A7S1N8X2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N8X2_9EUGL)

HSP 1 Score: 135 bits (339), Expect = 6.700e-37
Identity = 76/114 (66.67%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:   19 EDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLR 345
            ++SPL RKIRMLENRLDK+MIKYNEA SIRKTYEQI     EER+GFDN+L A+ERTL+AK  DY+ELL +S DANHA+E+A+ EL + R AYEEERR+++ EL E+ Q VQ R
Sbjct:  120 DESPLTRKIRMLENRLDKSMIKYNEAQSIRKTYEQIVKRLKEERIGFDNQLAAIERTLKAKDHDYQELLNMSHDANHAKEIAKAELAQFRAAYEEERRQKDKELTERKQYVQSR 233
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A067C208_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C208_SAPPC)

HSP 1 Score: 140 bits (354), Expect = 1.020e-36
Identity = 81/119 (68.07%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:    1 SVKPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQL 342
            S KP+ ED+P  RKIRMLENRLDKAMIKYNEA SIRKTYEQI     EER+GFDN+L A+ER   AK  DYEEL++LS DA HA+E+   EL+RVR  YEEERR RE ELREK QVV++
Sbjct:  136 SKKPSMEDTPETRKIRMLENRLDKAMIKYNEAQSIRKTYEQIVKRLKEERIGFDNQLAAIERAAAAKNHDYEELVMLSNDAAHAKELTLLELERVRSNYEEERRLREKELREKQQVVKM 254
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BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Match: A0A662Y3D2_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3D2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.740e-36
Identity = 79/127 (62.20%), Postives = 98/127 (77.17%), Query Frame = 1 
Query:    7 KPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQI-----EERVGFDNELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRRREAELREKHQVVQLRKQLKNQSDR 372
            KP+ ED+P  RKIRMLENRLDKAMIK+NEA SIRKTYEQI     EER+GFDN+L A+ER L AK  D+EEL+LLS DA HARE  Q EL++ R  +E+E+R RE ELREK Q V++R ++ N+ D+
Sbjct:  152 KPSLEDTPETRKIRMLENRLDKAMIKFNEAQSIRKTYEQIVKRLKEERIGFDNQLAAIERALTAKQHDFEELVLLSADATHARETIQLELEKARSQHEDEKRHREKELREKQQYVKIRLEMSNRLDK 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101910.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1P2_ECTSI8.430e-5784.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TV28_9STRA6.660e-4771.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836CG60_9STRA1.840e-4570.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3ZSK6_9STRA5.900e-4172.41Hypothetical protein n=5 Tax=Pelagomonas calceolat... [more]
A0A7S1CBH4_9STRA3.500e-4066.40Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2D4C5M1_PYTIN2.170e-3765.12Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9Z8L8_9STRA3.800e-3768.07Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S1N8X2_9EUGL6.700e-3766.67Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A067C208_SAPPC1.020e-3668.07Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A662Y3D2_9STRA2.740e-3662.20Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101910contigH-elongata_contig101910:670..1694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue7.7e-48
Seed eggNOG ortholog2880.D7G1P2
Preferred nameCCDC151
GOsGO:0000226,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009605,GO:0009628,GO:0009629,GO:0009799,GO:0009855,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031344,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0033043,GO:0034622,GO:0035082,GO:0035253,GO:0036064,GO:0036158,GO:0040011,GO:0042330,GO:0042332,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044087,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0048060,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0060271,GO:0060491,GO:0061371,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0097014,GO:0097542,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115
EggNOG free text desc.outer dynein arm assembly
EggNOG OGs28IVN@1,2QR7A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101910.168.1prot_H-elongata_contig101910.168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101910 670..1694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.944286-CDS-H-elongata_contig101910:669..7951622929558.944286-CDS-H-elongata_contig101910:669..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101910 670..795 +
1691679069.9174008-CDS-H-elongata_contig101910:669..7951691679069.9174008-CDS-H-elongata_contig101910:669..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101910 670..795 +
1622929558.9633503-CDS-H-elongata_contig101910:1253..13701622929558.9633503-CDS-H-elongata_contig101910:1253..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101910 1254..1370 +
1691679069.9328585-CDS-H-elongata_contig101910:1253..13701691679069.9328585-CDS-H-elongata_contig101910:1253..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101910 1254..1370 +
1622929558.9796898-CDS-H-elongata_contig101910:1565..16941622929558.9796898-CDS-H-elongata_contig101910:1565..1694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101910 1566..1694 +
1691679069.9422715-CDS-H-elongata_contig101910:1565..16941691679069.9422715-CDS-H-elongata_contig101910:1565..1694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101910 1566..1694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101910.168.1

>prot_H-elongata_contig101910.168.1 ID=prot_H-elongata_contig101910.168.1|Name=mRNA_H-elongata_contig101910.168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
SVKPNREDSPLARKIRMLENRLDKAMIKYNEAHSIRKTYEQIEERVGFDN
ELGAVERTLQAKVKDYEELLLLSGDANHAREVAQTELDRVRKAYEEERRR
REAELREKHQVVQLRKQLKNQSDR
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mRNA from alignment at H-elongata_contig101910:670..1694+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101910.168.1 ID=mRNA_H-elongata_contig101910.168.1|Name=mRNA_H-elongata_contig101910.168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-elongata_contig101910:670..1694+ (Himanthalia elongata Himel1 dioecious)
TCGGTGAAGCCAAACAGAGAAGATTCACCCTTGGCGCGGAAGATCCGAAT
GCTGGAAAACCGCCTGGACAAGGCGATGATTAAGTACAACGAGGCCCATA
GCATCCGCAAGACGTACGAGCAGATCGTCAAGAGGCTCAAGGAGAGAACG
CGCGCGCGATACAACTACGGTTACTTTTAGAGTTTATGACCCCCTCCCCG
CCCTTTCACCCTCCGCGTGTGGTGTTAGATCTAGATATTGGAATATTCGA
AGAGTACGCCACTTCGGAGACAGGATTTCCCACACACAATAAGAAGGGCA
CCGGCGCGGAAAATTAGATTTTTGAGTTGTTCTCGGCGTCATCTCTCCAA
CGCCGCACTATCTTTTACTATAATTAGTATATATTGCGTCACACGAAAAT
GGAGAGGGAAATTCAATTCTCGGAGGGTCTTCTCATCTATAAATAAAAAA
CAGCTCCACATAGACAGCATCGGGGAATGGAATGACCCAGAGCAACACGT
GAAGACCCATTTGGCGCCATCACTGAGGTCGACATCCTCCGGGGAGCCAG
CCTAACGTACGTGCCCTGACTTCATGACCCGCAGGAGGAACGTGTGGGCT
TCGACAATGAGCTGGGTGCGGTTGAACGTACCCTTCAAGCGAAGGTCAAG
GACTACGAGGAACTGTTATTGCTGTCGGGAGACGCTAACCACGCCCGAGA
GGTGACTTCGTCACGTCAAAAACACGAGACAAATACAGCTGAATAGGGCA
CATACATCCCACCAAGAGTGACAATCTCGGAGTCAAGCTCAATCCTGTCG
CGCTGCTGTTTTTGTCGAATCTCTTGCGTCACTCTTGCAGACTGTCATAT
CTGGTAACGCTCTCTGGCACGCTGACACGTAATCAAAATGAACCAGGTGG
CCCAAACGGAGCTGGATCGTGTTCGCAAAGCCTACGAGGAGGAGAGGAGG
CGGAGAGAGGCGGAACTCCGTGAAAAGCACCAAGTCGTGCAGCTGCGAAA
ACAGCTCAAAAATCAGTCCGACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig101910:670..1694+

>mRNA_H-elongata_contig101910.168.1 ID=mRNA_H-elongata_contig101910.168.1|Name=mRNA_H-elongata_contig101910.168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig101910:670..1694+ (Himanthalia elongata Himel1 dioecious)
TCGGTGAAGCCAAACAGAGAAGATTCACCCTTGGCGCGGAAGATCCGAAT
GCTGGAAAACCGCCTGGACAAGGCGATGATTAAGTACAACGAGGCCCATA
GCATCCGCAAGACGTACGAGCAGATCTCGGTGAAGCCAAACAGAGAAGAT
TCACCCTTGGCGCGGAAGATCCGAATGCTGGAAAACCGCCTGGACAAGGC
GATGATTAAGTACAACGAGGCCCATAGCATCCGCAAGACGTACGAGCAGA
TCGAGGAACGTGTGGGCTTCGACAATGAGCTGGGTGCGGTTGAACGTACC
CTTCAAGCGAAGGTCAAGGACTACGAGGAACTGTTATTGCTGTCGGGAGA
CGCTAACCACGCCCGAGAGGAGGAACGTGTGGGCTTCGACAATGAGCTGG
GTGCGGTTGAACGTACCCTTCAAGCGAAGGTCAAGGACTACGAGGAACTG
TTATTGCTGTCGGGAGACGCTAACCACGCCCGAGAGGTGGCCCAAACGGA
GCTGGATCGTGTTCGCAAAGCCTACGAGGAGGAGAGGAGGCGGAGAGAGG
CGGAACTCCGTGAAAAGCACCAAGTCGTGCAGCTGCGAAAACAGCTCAAA
AATCAGTCCGACAGGGTGGCCCAAACGGAGCTGGATCGTGTTCGCAAAGC
CTACGAGGAGGAGAGGAGGCGGAGAGAGGCGGAACTCCGTGAAAAGCACC
AAGTCGTGCAGCTGCGAAAACAGCTCAAAAATCAGTCCGACAGG
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