mRNA_H-elongata_contig101861.160.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE) HSP 1 Score: 128 bits (322), Expect = 4.070e-32 Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = 1 Query: 1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGG------------------------GVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVR 291 S PL ++ I RHPSA++ SHHDERGAGF+A+GFARAG G GG G+CAVVT+SGT+VANLLPAAAEADAAGL ML+LTADRPPE RGCGSNQTIDQ R Sbjct: 670 SAPL-AVAIARHPSAVSISHHDERGAGFYAVGFARAG-PGRGGRAHSXXXXXXXXXXXXXXXXXGALGICAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQAR 788
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI) HSP 1 Score: 125 bits (315), Expect = 3.650e-31 Identity = 75/120 (62.50%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAE----------------------GDGG-GVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVR 291 S PL ++ I RHPSA++ SHHDERGAGF+A+GFARAG G G G+CAVVT+SGT+VANLLPAAAEADAAGL ML+LTADRPPE RGCGSNQTIDQ R Sbjct: 903 SAPL-AVAIARHPSAVSISHHDERGAGFYAVGFARAGPGRGXXXXXXXXXXXXXXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQAR 1021
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A835Z971_9STRA (ADC synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z971_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.910e-21 Identity = 59/102 (57.84%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 1 SPPLPSLFINRHPSA------MATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQV 288 S PL R PSA M HHDERGA FFA+G+A+ G GG CAVVTTSGT+VANLLP A EA G ML+LTADRPPE R G++QT+DQV Sbjct: 235 STPLTHAAAPRAPSAAXXXXAMPLVHHDERGAAFFALGYAK----GSGGRPCAVVTTSGTAVANLLPGAMEAGLGGHAMLLLTADRPPEARDVGADQTLDQV 332
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.540e-21 Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 31 RHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPS 339 RHP HHDERGAGF+ +G+ARA G AV+ TSGT+VANLLPAA EA +P+L+LTADRPPE+R CG+NQT+ Q W +P P+ Sbjct: 577 RHPDTTLMVHHDERGAGFYCLGYARAR-----GRPAAVIVTSGTAVANLLPAAVEAATDRVPLLLLTADRPPEQRDCGANQTVAQPDMFLHFARWTKDVPCPT 674
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: MEND_CHLAA (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=3 Tax=Chloroflexi TaxID=200795 RepID=MEND_CHLAA) HSP 1 Score: 96.7 bits (239), Expect = 5.800e-21 Identity = 60/116 (51.72%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPSLYL 348 S PL +L + RHPS H DER AGFFA+G ARA G AV+ TSGT+VANLLPA EA+ A +P+++LTADRPPE R G+ QTIDQ+ R W LP P + L Sbjct: 37 STPL-ALAVARHPSLRVWMHLDERSAGFFALGMARAR-----GMPAAVLCTSGTAVANLLPAVVEANLARVPLVILTADRPPELRDNGAPQTIDQIGIFGRNVRWFVDLPTPDMAL 146
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: UPI0004DFA02D (2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase n=2 Tax=unclassified Chloroflexus TaxID=2633855 RepID=UPI0004DFA02D) HSP 1 Score: 96.3 bits (238), Expect = 7.920e-21 Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 1 Query: 1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPSLYL 348 S PL +L + RHP+ H DER AGFFA+G ARA AV+ TSGT+VANLLPA EA A +P+L+LTADRPPE R G+ QTIDQ+ R W LP+P + L Sbjct: 37 STPL-ALAVARHPALRVWMHLDERSAGFFALGIARARHR-----PAAVLCTSGTAVANLLPAVVEAHLARVPLLLLTADRPPELRDNGAPQTIDQIGIFGRNVRWFIDLPVPQMTL 146
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A2T2U9C8_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Bacteroidetes bacterium QS_8_64_10 TaxID=1919108 RepID=A0A2T2U9C8_9BACT) HSP 1 Score: 96.3 bits (238), Expect = 7.960e-21 Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 19 LFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQ---VRDGARGDGWVSGLPIPS 339 L + RHP A A H+DERG+ F A+G+ARA A+ DG A +TTSGT+VAN LPA EA +PML+LT DRPPE R SNQTIDQ D AR W LP P+ Sbjct: 47 LAVARHPEAQAVVHYDERGSAFAALGYARATAD-DGSRPAAWITTSGTAVANGLPAVVEAGTDAVPMLLLTTDRPPERRDTASNQTIDQPDIFGDYAR---WQFDLPAPT 152
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: MEND_SALRD (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=12 Tax=Salinibacter ruber TaxID=146919 RepID=MEND_SALRD) HSP 1 Score: 95.5 bits (236), Expect = 1.480e-20 Identity = 61/113 (53.98%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPS 339 S PL ++ I RHP A + H DERGA F A+G RA G A VTTSGT+VAN LPAA EA G+PML+LTADRPPE R G+NQTIDQV+ W + +P PS Sbjct: 42 STPL-TVAIARHPEAESVLHVDERGAAFAALGVGRAAR-----GPAAWVTTSGTAVANGLPAAVEASVDGVPMLLLTADRPPELRDTGANQTIDQVKIFGDYVRWQADVPPPS 148
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A2H3P0E4_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Longimonas halophila TaxID=1469170 RepID=A0A2H3P0E4_9BACT) HSP 1 Score: 94.4 bits (233), Expect = 3.760e-20 Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 25 INRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPS 339 + +HP A + H DERG F A+GFARA G +TTSGT+VAN +PA AEA G+PML+LTADRPPE RG G+NQTIDQV+ W + +P PS Sbjct: 50 VAQHPVAQSVLHVDERGGAFAALGFARATGHPAGW-----ITTSGTAVANGMPAVAEAGQEGIPMLLLTADRPPELRGTGANQTIDQVKLFGDHVRWSADVPPPS 149
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: UPI000AC99170 (2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase n=1 Tax=Rhodothermus marinus TaxID=29549 RepID=UPI000AC99170) HSP 1 Score: 90.1 bits (222), Expect = 4.390e-20 Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 25 INRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPSLYL 348 + RHP A A H+DERG F A+G+ RA G A +TTSGT+VAN PA EA +P+L+LTADRPPE R G+NQTIDQV+ W LP+P L Sbjct: 42 VARHPEARAIVHYDERGTAFLALGYGRAT-----GRPAAWITTSGTAVANGFPAVVEASQDEIPLLLLTADRPPELRDTGANQTIDQVKLFGSYVRWQFELPVPDPDL 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101861.160.1 >prot_H-elongata_contig101861.160.1 ID=prot_H-elongata_contig101861.160.1|Name=mRNA_H-elongata_contig101861.160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTback to top mRNA from alignment at H-elongata_contig101861:1856..2206+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101861.160.1 ID=mRNA_H-elongata_contig101861.160.1|Name=mRNA_H-elongata_contig101861.160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig101861:1856..2206+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101861:1856..2206+ >mRNA_H-elongata_contig101861.160.1 ID=mRNA_H-elongata_contig101861.160.1|Name=mRNA_H-elongata_contig101861.160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig101861:1856..2206+ (Himanthalia elongata Himel1 dioecious)back to top |