mRNA_H-elongata_contig10186.159.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10186.159.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI) HSP 1 Score: 313 bits (802), Expect = 1.550e-90 Identity = 272/483 (56.31%), Postives = 339/483 (70.19%), Query Frame = 1
Query: 73 KWRNVLSERLEKAGAEAAATVAAAAREHDALVEETQQAFREERNRFREEAKILAASAVEEERKRGLEREAEARANGVAEADXXXXXXXEEDRRKSDKELTVALAAAAERTMEAVVETRAAXXXXXXXXXXXXXXXXEELEREFVTARKRAVTLERDKWLKASEDAEVRAAAEKAAAYERGMVDRGRRAEIEAIQLHDAGEKALEKVKEETRSTIEEMVTRHAQEIDVEIKRVSEEARVVRERALEAARETWAQQQTKAVSNARAAATAEARVRAERERTVAVEAAKEREKLVTEKVKDELRSAKTAWTAERHRLKEKTTALEEAEKKAKAEILRVMVTSNQATQRAQARWEEGQKVAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAQAGATSERLRKQASFSLQQAEATQADMRRERDQVTTELEKCRTKIKELDVIVSNTQEDALEQAASHSILVWRLTAAGLRRELSHEK 1521
KWR VL E L+KA EAAA AAA+R+HDAL+EETQQAFR ER R REEA+ LA++A E ER+RGL AEA+A G AEA E+D +++++ AL AA R EA R+ XXXXXXXXXXXXXXXX LER AR+RAV LE KW +ASE+A G DRGR+AE+EA+QL DA EKALE+VK+ R+TIEEM RH++E++ E KRVS+E V RE AL+AA E ++QQQTKAV+N +AVEAAKERE+L TEKV+DELRS+KT W AER RLKE+ T LEEAE+KAK +LR M S+QATQ+A+ARWEE QK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQA A +ER+RKQA+ SLQ+AE A+ ++E+D +T ELEKCR ++E + + +++ D EQ+ +HS+ WR+ A + + +EK
Sbjct: 1580 KWRGVLREELKKAEDEAAAVAAAASRDHDALLEETQQAFRMERERLREEAERLASAATEAERQRGLTLCAEAKAAGAAEAGAAFALTREQDLAEAERKREEALEEAAGRAKEAEALARSXXXXXXXXXXXXXXXXXXXLERALAKARERAVELEGGKWKRASEEAXXXXXXXXXXXXXXGTADRGRQAEVEALQLQDAAEKALEEVKQGARTTIEEMAARHSEELEAERKRVSDEEAVAREAALKAAGEEFSQQQTKAVANXXXXXXXXXXXXXXXXXGLAVEAAKERERLATEKVQDELRSSKTEWAAERRRLKEQITLLEEAEQKAKDNLLRAMANSSQATQKARARWEESQKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQAEAMAERIRKQANVSLQKAEGLYAESQQEKDLLTAELEKCRNTLEECESSLVHSEADLKEQSVTHSVATWRMAVASINLRVVNEK 2062 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10186.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10186.159.1 >prot_H-elongata_contig10186.159.1 ID=prot_H-elongata_contig10186.159.1|Name=mRNA_H-elongata_contig10186.159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=507bp QAAVLRTNEACAEVSKKVAEETGKKWRNVLSERLEKAGAEAAATVAAAARback to top mRNA from alignment at H-elongata_contig10186:1347..5876- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10186.159.1 ID=mRNA_H-elongata_contig10186.159.1|Name=mRNA_H-elongata_contig10186.159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4530bp|location=Sequence derived from alignment at H-elongata_contig10186:1347..5876- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10186:1347..5876- >mRNA_H-elongata_contig10186.159.1 ID=mRNA_H-elongata_contig10186.159.1|Name=mRNA_H-elongata_contig10186.159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3042bp|location=Sequence derived from alignment at H-elongata_contig10186:1347..5876- (Himanthalia elongata Himel1 dioecious)back to top |