mRNA_H-elongata_contig10176.150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10176.150.1
Unique NamemRNA_H-elongata_contig10176.150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10176.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10176contigH-elongata_contig10176:3507..6921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size2024
Cds size1599
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.9062116-UTR-H-elongata_contig10176:3506..35301622929556.9062116-UTR-H-elongata_contig10176:3506..3530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10176 3507..3530 +
1691679068.912754-UTR-H-elongata_contig10176:3506..35301691679068.912754-UTR-H-elongata_contig10176:3506..3530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10176 3507..3530 +
1622929557.0145497-UTR-H-elongata_contig10176:6520..69211622929557.0145497-UTR-H-elongata_contig10176:6520..6921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10176 6521..6921 +
1691679068.964224-UTR-H-elongata_contig10176:6520..69211691679068.964224-UTR-H-elongata_contig10176:6520..6921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10176 6521..6921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.9263875-CDS-H-elongata_contig10176:3530..40281622929556.9263875-CDS-H-elongata_contig10176:3530..4028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 3531..4028 +
1691679068.9253054-CDS-H-elongata_contig10176:3530..40281691679068.9253054-CDS-H-elongata_contig10176:3530..4028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 3531..4028 +
1622929556.9462526-CDS-H-elongata_contig10176:4540..48371622929556.9462526-CDS-H-elongata_contig10176:4540..4837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 4541..4837 +
1691679068.9325113-CDS-H-elongata_contig10176:4540..48371691679068.9325113-CDS-H-elongata_contig10176:4540..4837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 4541..4837 +
1622929556.968301-CDS-H-elongata_contig10176:5077..52301622929556.968301-CDS-H-elongata_contig10176:5077..5230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 5078..5230 +
1691679068.9399977-CDS-H-elongata_contig10176:5077..52301691679068.9399977-CDS-H-elongata_contig10176:5077..5230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 5078..5230 +
1622929556.9824903-CDS-H-elongata_contig10176:5614..57761622929556.9824903-CDS-H-elongata_contig10176:5614..5776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 5615..5776 +
1691679068.9476328-CDS-H-elongata_contig10176:5614..57761691679068.9476328-CDS-H-elongata_contig10176:5614..5776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 5615..5776 +
1622929556.99705-CDS-H-elongata_contig10176:6031..65201622929556.99705-CDS-H-elongata_contig10176:6031..6520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 6032..6520 +
1691679068.9556415-CDS-H-elongata_contig10176:6031..65201691679068.9556415-CDS-H-elongata_contig10176:6031..6520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10176 6032..6520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10176.150.1prot_H-elongata_contig10176.150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10176 3531..6520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10176.150.1

>prot_H-elongata_contig10176.150.1 ID=prot_H-elongata_contig10176.150.1|Name=mRNA_H-elongata_contig10176.150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=533bp
MHLKYCTFGCSIMCGPTHAILIMLLDIMEAWGYIGLAFAAKQDPIFISFR
QVMPLFPTKIHDCTSAGSGAARRCQDFSAPDAYSKCTINSSSIPIVDPNI
PRLMAVSVRIATLKVGTYLNSSAASPRAKFVSSDIGMQERDSLVALMEVA
ATEIEVCGDIDVEGGKITARAGATTIELRDNSLLRENTLSPVKTDPQQPQ
LMRAGPVGVEMSAACLTPTCRQGQPRATPDNLRGCLDDVLLMDHLPRVTT
LAPIDSPEQTRLGHEEPLGNSRDSASEETFWDVLRSMDKWNCGVRLILGH
YTAELGKWPGRIVAQEVWRRFRFMVPAQNLESVVQDTEILRGATRDASGM
VKSSTWLLRSGTSCLALDFKVPQQSPPPPHDGDVLFPGPPTVYLYVSSSE
SESESEMGATAAERTSNEHRDHATKHGTEARYSCMGCVQFPPMVYKEGQS
AKARRPQVESQSLEFDRLVVKKALTDENRSNANATANTRGPMTNAQLMQR
IRELEAEVTTLKEAARKSPRCGGVHGSTETEA*
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mRNA from alignment at H-elongata_contig10176:3507..6921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10176.150.1 ID=mRNA_H-elongata_contig10176.150.1|Name=mRNA_H-elongata_contig10176.150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3415bp|location=Sequence derived from alignment at H-elongata_contig10176:3507..6921+ (Himanthalia elongata Himel1 dioecious)
CGCTGGTATCACTAGTGCACTGCCATGCACTTAAAATACTGCACTTTTGG
TTGCAGTATAATGTGCGGTCCAACTCATGCAATTCTTATTATGCTCCTAG
ATATAATGGAGGCATGGGGATATATCGGGCTTGCTTTCGCCGCTAAGCAA
GACCCCATCTTTATTTCATTTCGTCAGGTTATGCCTCTATTCCCCACCAA
AATTCACGATTGCACCTCCGCTGGGAGCGGTGCTGCAAGGCGCTGCCAAG
ACTTCTCGGCACCGGACGCATATTCCAAGTGTACGATCAATTCTAGCAGT
ATTCCTATCGTCGACCCGAACATTCCCCGTCTTATGGCGGTAAGCGTGCG
CATAGCCACGCTGAAGGTAGGTACATACCTCAACTCCAGCGCCGCATCGC
CGCGTGCAAAATTTGTTAGTAGTGACATTGGCATGCAGGAGCGCGACAGT
CTGGTGGCATTGATGGAGGTCGCGGCCACGGAGATTGAGGTGTGCGGTGA
CATCGACGTCGAGGGCGGCAAGGTGTGCTTTACAACGCTCCCAACTACGT
AGGTGGCAGTGTGATATATTTGTACCACAACTACAATTCAGTGACTGTAC
GCCCTAGAAATGTAGAACAGTGCCCTTCGTAGCCGCTCGCGTTGGCCGTT
GTTCTAGCTGTGTAAGCTAGCATGAAGCTATTGACTTCTTGACAAACCCA
TGTCTTAGCTCTGATATGATACTAATATTTTCGGTAACGGTGGATATGCG
ACGGGATGGTGGACGGTAGACGATTCAGTAAGCAATGATCGGCAACGGGC
GCGGGAGTCCATTGGTGGAGTCTATCACATTATATTTTCTTTCTCTTTCT
CAAGCTCAACGCACAATACGGCGCGAAAACCGTTACGATGGGTACTGCGG
TTACTATTGTGTGCTGGATAAGATGAAAACTCATGTGCGACATCGGCAGC
ACCAGCACCAGCACCATCAGTTCTACAACCAATTCATCCTTCACATATGT
TCGTGCCTCCACACTTGCTTAAACTCCGACGCAGATCACCGCACGTGCGG
GAGCGACAACAATTGAGTTACGGGACAACAGCCTCTTGAGAGAAAACACT
CTCTCCCCGGTTAAAACAGATCCCCAACAGCCACAGCTTATGCGGGCAGG
GCCTGTGGGCGTGGAAATGAGTGCAGCATGTCTTACCCCAACATGTAGAC
AAGGTCAGCCTCGAGCCACTCCTGACAATTTACGCGGCTGCCTCGATGAC
GTGCTCTTGATGGATCATTTACCAAGAGTGACTACGTTAGCGCCGATCGA
TTCGCCGGAGCAGACGAGATTGGGTCATGAGGTGCGCGAGGTTAGGATTA
TTGGAACATTTGTTTTTGGACCTTGTTGCCGTGTTGATTTCAGTGCCACG
AAAATAAAATATTCAAAAGATATAACGACATAGAAATGAACACCCACGTT
GTGGTTGGTGGATGTCTCGCCTCACCCGACTCCTCTTTTTCACCAGCGAC
ACCTGCGTAATACAATTGCCAAATATGCCCATAATGCATATGGGGATGAA
ACTGAAACCTTTGAATCAAAGGAACCGCTGGGCAACAGCAGAGATAGCGC
TAGTGAGGAAACATTCTGGGACGTATTAAGATCTATGGACAAGTGGAACT
GTGGCGTACGACTCATATTGGGGCACTATACGGCCGAGCTCGGAAAATGG
CCGGGTAGAATTGTTGCGCAAGAGGTGAGACGTGTATGGATCGCAATTTT
TGATTGCAAATGGGGCGTAAGCCAATTGAATGTCCCAGTACTAATAAGTA
TCAGGTATTTCCCACGCTTGGATATGACGAGAGAGAGGCGAGTAACGATA
GAAATACGGAGAGTTGCTAAACATTCGTAGAGCTCGATTTGATGGTATTT
GATGGCGATGTATTGCATAGTACCACACAACAGCAAATTATTACTGCACT
TACACCGGTCCAAATTGATACGATACGGCGAACATCGAACACTAGGAAGC
ACAGCTGTACACGGTTTCCTGTAATGAATGTGGCAACACATGACATAATG
GTGTAGGGCTCCCGGTGTCGTTTCTTCACAGCCCCCTCCATCCCGTCACG
GTGTCTAGGTTTGGAGGCGCTTCCGGTTTATGGTGCCAGCCCAAAATCTA
GAATCTGTAGTACAGGACACCGAAATTCTGCGGGGAGCCACGAGAGACGC
TTCAGGGATGGTCAAGAGTTCAACTTGGCTATTGAGATCGGGGACGAGTT
GCCTTGCTTTGGACTTCAAGGTGTATGTGACAATATAATGCTCTTAACCT
TGAGCTTGAGAGCTGCTAGAAATGCCGTATGAACGTACCACACTTCTGAA
CAGAGGCGATATGTGATACCATGCAAGACTATTGTTGCTCTCTTGACCTT
AGGTGACATCCTGCACTAGAGCTATGTAAACAAAGTAGCATTTCTTGGTT
GCTATATAACATTGAAGTGCCGTAAAATCTCAATATCTGCATCGAATCGT
GCGTCCCTCTCCCGGCAAAGGACAGGTTCCTCAACAGTCGCCGCCTCCTC
CTCATGATGGCGATGTCCTCTTCCCTGGACCCCCCACCGTATACTTGTAC
GTGAGCTCCAGCGAGAGCGAGAGCGAAAGTGAGATGGGCGCGACAGCTGC
AGAACGGACGAGCAATGAGCACCGAGACCACGCTACAAAACACGGAACGG
AAGCACGCTATTCATGCATGGGTTGTGTTCAATTTCCGCCAATGGTTTAT
AAGGAAGGCCAGTCGGCCAAGGCACGGCGGCCTCAAGTTGAGTCCCAATC
GCTTGAGTTTGACAGGCTGGTAGTCAAGAAAGCCCTGACGGACGAAAACC
GCTCGAACGCAAATGCGACGGCCAACACACGGGGGCCAATGACGAACGCC
CAGCTGATGCAGAGGATACGAGAGCTGGAGGCAGAAGTGACCACACTCAA
GGAAGCTGCCAGGAAGTCGCCTCGCTGCGGCGGTGTGCATGGAAGCACTG
AAACTGAAGCTTAGCTCGTCCCGTTGAAGCATTCCGCCTCGCGCTTTTTG
CACACGCGTCGGTTACCGTGTCGTAACTGCTGCTTTTTGATAGACTCCCG
TGTTGCATTTTTTTTTCATTTTTCAATTCCGTATCTTTTGCAGTACCAAG
TTCAACGCCGTCCTACTACATAGTAAGCCCCCTGTGCAGGTCCGAGAATA
ATTGATGCTGCATGGGTCAACACCCTGCGCTTTACCGTAGATGGGGGATA
TTTGCGCGAAATATAATTCCCCAGTGATGGAAGCCTTCCGACGCCAGTTT
TCTTGACAACACAGGCAACGCCGACATCGCATTTGTTTTAGATTTATTTA
ATTCTCACCTAAACTGATGTAAAAATCCAGGCCGTGGTCACAATGTAGAA
ATGCAGAAAAGTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig10176:3507..6921+

>mRNA_H-elongata_contig10176.150.1 ID=mRNA_H-elongata_contig10176.150.1|Name=mRNA_H-elongata_contig10176.150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3198bp|location=Sequence derived from alignment at H-elongata_contig10176:3507..6921+ (Himanthalia elongata Himel1 dioecious)
ATGCACTTAAAATACTGCACTTTTGGTTGCAGTATAATGTGCGGTCCAAC
TCATGCAATTCTTATTATGCTCCTAGATATAATGGAGGCATGGGGATATA
TCGGGCTTGCTTTCGCCGCTAAGCAAGACCCCATCTTTATTTCATTTCGT
CAGGTTATGCCTCTATTCCCCACCAAAATTCACGATTGCACCTCCGCTGG
GAGCGGTGCTGCAAGGCGCTGCCAAGACTTCTCGGCACCGGACGCATATT
CCAAGTGTACGATCAATTCTAGCAGTATTCCTATCGTCGACCCGAACATT
CCCCGTCTTATGGCGGTAAGCGTGCGCATAGCCACGCTGAAGGTAGGTAC
ATACCTCAACTCCAGCGCCGCATCGCCGCGTGCAAAATTTGTTAGTAGTG
ACATTGGCATGCAGGAGCGCGACAGTCTGGTGGCATTGATGGAGGTCGCG
GCCACGGAGATTGAGGTGTGCGGTGACATCGACGTCGAGGGCGGCAAGAT
GCACTTAAAATACTGCACTTTTGGTTGCAGTATAATGTGCGGTCCAACTC
ATGCAATTCTTATTATGCTCCTAGATATAATGGAGGCATGGGGATATATC
GGGCTTGCTTTCGCCGCTAAGCAAGACCCCATCTTTATTTCATTTCGTCA
GGTTATGCCTCTATTCCCCACCAAAATTCACGATTGCACCTCCGCTGGGA
GCGGTGCTGCAAGGCGCTGCCAAGACTTCTCGGCACCGGACGCATATTCC
AAGTGTACGATCAATTCTAGCAGTATTCCTATCGTCGACCCGAACATTCC
CCGTCTTATGGCGGTAAGCGTGCGCATAGCCACGCTGAAGGTAGGTACAT
ACCTCAACTCCAGCGCCGCATCGCCGCGTGCAAAATTTGTTAGTAGTGAC
ATTGGCATGCAGGAGCGCGACAGTCTGGTGGCATTGATGGAGGTCGCGGC
CACGGAGATTGAGGTGTGCGGTGACATCGACGTCGAGGGCGGCAAGATCA
CCGCACGTGCGGGAGCGACAACAATTGAGTTACGGGACAACAGCCTCTTG
AGAGAAAACACTCTCTCCCCGGTTAAAACAGATCCCCAACAGCCACAGCT
TATGCGGGCAGGGCCTGTGGGCGTGGAAATGAGTGCAGCATGTCTTACCC
CAACATGTAGACAAGGTCAGCCTCGAGCCACTCCTGACAATTTACGCGGC
TGCCTCGATGACGTGCTCTTGATGGATCATTTACCAAGAGTGACTACGTT
AGCGCCGATCGATTCGCCGGAGCAGACGAGATTGGGTCATGAGATCACCG
CACGTGCGGGAGCGACAACAATTGAGTTACGGGACAACAGCCTCTTGAGA
GAAAACACTCTCTCCCCGGTTAAAACAGATCCCCAACAGCCACAGCTTAT
GCGGGCAGGGCCTGTGGGCGTGGAAATGAGTGCAGCATGTCTTACCCCAA
CATGTAGACAAGGTCAGCCTCGAGCCACTCCTGACAATTTACGCGGCTGC
CTCGATGACGTGCTCTTGATGGATCATTTACCAAGAGTGACTACGTTAGC
GCCGATCGATTCGCCGGAGCAGACGAGATTGGGTCATGAGGAACCGCTGG
GCAACAGCAGAGATAGCGCTAGTGAGGAAACATTCTGGGACGTATTAAGA
TCTATGGACAAGTGGAACTGTGGCGTACGACTCATATTGGGGCACTATAC
GGCCGAGCTCGGAAAATGGCCGGGTAGAATTGTTGCGCAAGAGGAACCGC
TGGGCAACAGCAGAGATAGCGCTAGTGAGGAAACATTCTGGGACGTATTA
AGATCTATGGACAAGTGGAACTGTGGCGTACGACTCATATTGGGGCACTA
TACGGCCGAGCTCGGAAAATGGCCGGGTAGAATTGTTGCGCAAGAGGTTT
GGAGGCGCTTCCGGTTTATGGTGCCAGCCCAAAATCTAGAATCTGTAGTA
CAGGACACCGAAATTCTGCGGGGAGCCACGAGAGACGCTTCAGGGATGGT
CAAGAGTTCAACTTGGCTATTGAGATCGGGGACGAGTTGCCTTGCTTTGG
ACTTCAAGGTTTGGAGGCGCTTCCGGTTTATGGTGCCAGCCCAAAATCTA
GAATCTGTAGTACAGGACACCGAAATTCTGCGGGGAGCCACGAGAGACGC
TTCAGGGATGGTCAAGAGTTCAACTTGGCTATTGAGATCGGGGACGAGTT
GCCTTGCTTTGGACTTCAAGGTTCCTCAACAGTCGCCGCCTCCTCCTCAT
GATGGCGATGTCCTCTTCCCTGGACCCCCCACCGTATACTTGTACGTGAG
CTCCAGCGAGAGCGAGAGCGAAAGTGAGATGGGCGCGACAGCTGCAGAAC
GGACGAGCAATGAGCACCGAGACCACGCTACAAAACACGGAACGGAAGCA
CGCTATTCATGCATGGGTTGTGTTCAATTTCCGCCAATGGTTTATAAGGA
AGGCCAGTCGGCCAAGGCACGGCGGCCTCAAGTTGAGTCCCAATCGCTTG
AGTTTGACAGGCTGGTAGTCAAGAAAGCCCTGACGGACGAAAACCGCTCG
AACGCAAATGCGACGGCCAACACACGGGGGCCAATGACGAACGCCCAGCT
GATGCAGAGGATACGAGAGCTGGAGGCAGAAGTGACCACACTCAAGGAAG
CTGCCAGGAAGTCGCCTCGCTGCGGCGGTGTGCATGGAAGCACTGAAACT
GAAGCTTAGGTTCCTCAACAGTCGCCGCCTCCTCCTCATGATGGCGATGT
CCTCTTCCCTGGACCCCCCACCGTATACTTGTACGTGAGCTCCAGCGAGA
GCGAGAGCGAAAGTGAGATGGGCGCGACAGCTGCAGAACGGACGAGCAAT
GAGCACCGAGACCACGCTACAAAACACGGAACGGAAGCACGCTATTCATG
CATGGGTTGTGTTCAATTTCCGCCAATGGTTTATAAGGAAGGCCAGTCGG
CCAAGGCACGGCGGCCTCAAGTTGAGTCCCAATCGCTTGAGTTTGACAGG
CTGGTAGTCAAGAAAGCCCTGACGGACGAAAACCGCTCGAACGCAAATGC
GACGGCCAACACACGGGGGCCAATGACGAACGCCCAGCTGATGCAGAGGA
TACGAGAGCTGGAGGCAGAAGTGACCACACTCAAGGAAGCTGCCAGGAAG
TCGCCTCGCTGCGGCGGTGTGCATGGAAGCACTGAAACTGAAGCTTAG
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