mRNA_H-elongata_contig101722.147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101722.147.1
Unique NamemRNA_H-elongata_contig101722.147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: D7FUQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 9.560e-26
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 QVVYSAMHGVGDQWARRAFGCFSLPPFLSVESQREPDPEFPTLAFPNPEEPGALDEAIALAETKGEGKSINA 216
            +VVYSAMHGVGD WA+RAF CFSLPP++SV  Q EPDPEFPT+AFPNPEE GAL EA+ LAE +G   + N+
Sbjct:  332 EVVYSAMHGVGDSWAQRAFSCFSLPPYVSVRCQSEPDPEFPTVAFPNPEEQGALKEAMLLAEERGIDGAFNS 403
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A6H5K128_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K128_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.710e-25
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 3 
Query:  216 VSLVLANDPDGDRLAAAERQPSGRWHVFSGNEIGVLMGMWQWEEWRRIHPNEDPSKAV 389
            +  VLANDPDGDRLAAAERQPSG W+VFSGNEIG L+G+WQWEEWRR HP ED S AV
Sbjct:  398 IPFVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRKHPEEDASNAV 455
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A2R5G4P9_9STRA (Phosphoglucomutase-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4P9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.750e-18
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 QVVYSAMHGVGDQWARRAFGCFSLPPFLSVESQREPDPEFPTLAFPNPEEPGALDEAIALAETKG 195
            +V YSAMHGVG +WA+R+F  F  P F  V+SQ EPDPEFPT+ FPNPEE GALD AI  A++ G
Sbjct:  245 KVAYSAMHGVGHEWAKRSFKTFGHPAFTPVDSQVEPDPEFPTVPFPNPEEKGALDPAIEAADSAG 309
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A7S1G4C9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4C9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.020e-18
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:  216 VSLVLANDPDGDRLAAAERQPSGRWHVFSGNEIGVLMGMWQWEEWRRIHPNEDPSKAV 389
             +++LANDPD DRLA AER   G W VF+GNE+G ++G WQWEEWR  +P+ D S+  
Sbjct:   93 ATVILANDPDADRLAVAERGEGGAWRVFTGNELGAILGAWQWEEWRAANPDGDASQVA 150
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A418DEE9_9STRA (PGM_PMM_III domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DEE9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.220e-17
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:  219 SLVLANDPDGDRLAAAERQPSGRWHVFSGNEIGVLMGMWQWEEWRRIHPNEDPSK 383
            SL+LANDPD DRLA AE  P+G WH+F+GNEIG L+G W++ ++ + HP  D SK
Sbjct:    8 SLILANDPDADRLAVAELLPTGDWHLFTGNEIGTLLGFWEYTQYMKQHPTADKSK 62
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A183AN93_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AN93_9TREM)

HSP 1 Score: 85.9 bits (211), Expect = 5.210e-17
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:  222 LVLANDPDGDRLAAAERQPSGRWHVFSGNEIGVLMGMWQWEEWRRIHPNEDPS 380
            L+LANDPD DRLA AE+Q SG W +FSGNE+G L G W W  WR+ +PN DPS
Sbjct:  294 LILANDPDADRLAVAEKQASGTWKIFSGNELGALFGWWIWSNWRKRNPNADPS 346
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A6V3LV47_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3LV47_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 5.370e-17
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QVVYSAMHGVGDQWARRAFGCFSLPPFLSVESQREPDPEFPTLAFPNPEEPGALDEAIALAETKG 195
            ++ Y+AMHGVG+++ RRAF  F+LPPF++V+ Q  PDP FPT+AFPNPEE GALD A+  A+  G
Sbjct:  279 KIAYTAMHGVGERFIRRAFKDFNLPPFVAVKQQGSPDPTFPTVAFPNPEEKGALDLALKTAKENG 343
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BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A7S4DP20_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP20_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 7.550e-17
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QVVYSAMHGVGDQWARRAFGCFSLPPFLSVESQREPDPEFPTLAFPNPEEPGALDEAIALAETKG 195
            ++ Y+AMHGVG+++ RRAF  F+LPPF++V+ Q  PDP FPT+AFPNPEE GALD A+  A+  G
Sbjct:  449 KIAYTAMHGVGERFIRRAFKDFNLPPFVAVKQQGSPDPTFPTVAFPNPEEKGALDLALKTAKENG 513
[Close]
BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: A0A7S4DP23_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP23_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 7.830e-17
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QVVYSAMHGVGDQWARRAFGCFSLPPFLSVESQREPDPEFPTLAFPNPEEPGALDEAIALAETKG 195
            ++ Y+AMHGVG+++ RRAF  F+LPPF++V+ Q  PDP FPT+AFPNPEE GALD A+  A+  G
Sbjct:  279 KIAYTAMHGVGERFIRRAFKDFNLPPFVAVKQQGSPDPTFPTVAFPNPEEKGALDLALKTAKENG 343
[Close]
BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Match: H2KRW5_CLOSI (Phosphoglucomutase n=5 Tax=Opisthorchiidae TaxID=6196 RepID=H2KRW5_CLOSI)

HSP 1 Score: 85.1 bits (209), Expect = 9.840e-17
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  222 LVLANDPDGDRLAAAERQPSGRWHVFSGNEIGVLMGMWQWEEWRRIHPNEDPSK 383
            ++LANDPD DRLA AE+QP G+W +F+GNE+G + G W W +WR+ +P+ DPS+
Sbjct:  231 VILANDPDADRLAVAEKQPDGKWKIFNGNELGAMFGCWIWSQWRKRNPDADPSR 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101722.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUQ5_ECTSI9.560e-2669.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K128_9PHAE4.710e-2579.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5G4P9_9STRA4.750e-1863.08Phosphoglucomutase-2 n=1 Tax=Hondaea fermentalgian... [more]
A0A7S1G4C9_9STRA6.020e-1855.17Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A418DEE9_9STRA3.220e-1758.18PGM_PMM_III domain-containing protein n=2 Tax=Apha... [more]
A0A183AN93_9TREM5.210e-1764.15Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
A0A6V3LV47_9EUKA5.370e-1758.46Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4DP20_9EUKA7.550e-1758.46Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S4DP23_9EUKA7.830e-1758.46Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
H2KRW5_CLOSI9.840e-1755.56Phosphoglucomutase n=5 Tax=Opisthorchiidae TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101722contigH-elongata_contig101722:440..1619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue7.5e-19
Seed eggNOG ortholog2880.D7FUQ5
Preferred nameGPM2
KEGG rclassRC00408
KEGG koko:K01835,ko:K15779
KEGG ReactionR00959,R01057,R02749,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006139,GO:0006148,GO:0006152,GO:0006166,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008617,GO:0008973,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019318,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0043094,GO:0043101,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046102,GO:0046115,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
EggNOG free text desc.alginic acid metabolic process
EggNOG OGsCOG1109@1,KOG1220@2759
Ec32 ortholog descriptionAlpha-D-phosphohexomutase, alpha/beta/alpha domain II
Ec32 orthologEc-19_004310.1
EC5.4.2.2,5.4.2.7
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101722.147.1prot_H-elongata_contig101722.147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101722 440..1601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.5919514-CDS-H-elongata_contig101722:439..6161622929556.5919514-CDS-H-elongata_contig101722:439..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101722 440..616 -
1691679068.7869816-CDS-H-elongata_contig101722:439..6161691679068.7869816-CDS-H-elongata_contig101722:439..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101722 440..616 -
1622929556.6080725-CDS-H-elongata_contig101722:1406..16011622929556.6080725-CDS-H-elongata_contig101722:1406..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101722 1407..1601 -
1691679068.8012376-CDS-H-elongata_contig101722:1406..16011691679068.8012376-CDS-H-elongata_contig101722:1406..1601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101722 1407..1601 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.6255841-UTR-H-elongata_contig101722:1601..16191622929556.6255841-UTR-H-elongata_contig101722:1601..1619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101722 1602..1619 -
1691679068.8090835-UTR-H-elongata_contig101722:1601..16191691679068.8090835-UTR-H-elongata_contig101722:1601..1619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101722 1602..1619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101722.147.1

>prot_H-elongata_contig101722.147.1 ID=prot_H-elongata_contig101722.147.1|Name=mRNA_H-elongata_contig101722.147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MHGVGDQWARRAFGCFSLPPFLSVESQREPDPEFPTLAFPNPEEPGALDE
AIALAETKGEGKSINASPWSWRTILTGIGSRRQRGSPRDAGMCFPAMRSE
CLWVCGSGKNGGGFIPTRIPPRR*
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mRNA from alignment at H-elongata_contig101722:440..1619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101722.147.1 ID=mRNA_H-elongata_contig101722.147.1|Name=mRNA_H-elongata_contig101722.147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1180bp|location=Sequence derived from alignment at H-elongata_contig101722:440..1619- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGTACTCTGCAATGCATGGCGTCGGGGATCAGTGGGCTCGCCG
CGCTTTCGGGTGCTTCTCGCTTCCCCCCTTCTTATCAGTGGAGAGCCAAA
GGGAGCCCGACCCAGAGTTCCCCACGTTGGCGTTTCCCAATCCAGAAGAA
CCTGGGGCGCTGGACGAGGCGATAGCCCTGGCGGAGACGAAAGGCGAGGG
AAAATCGATTAATGTCTAGGGTATGGGGAGAGGTTGGTTTTCCCTCGAAA
ACAACTTGCAGTTGGTGTGGGTTGGCGAGGCGAGGCGAGGTGAGGTCCTG
AGACGACTGTAGGACTGTAGTCTATACTATACTATACTATACTATACTAT
ACTATACTATACTCTACTCTACTCTACTATACTATAATAGCACATGTCTG
TCCACTGTACTCTTCCAATGGTGGGTGTTGGAAAAGAGAGACGCACAATT
AGTGGTACATGGGGTTACCTGAATAGGCTGCACTCATTACTCAGCTACCT
TGAGAACTGCTGGCTCAGTGTCGGTGGACTCTCGTTTGTAAACGCCATCG
GTACGCCATTGCCCGGCCTGATGAATTCGGGATTGACCCGATGATGGTTG
ACGGTTGACGGTAGAGATGGACGCCGTCGCGGAAAAACGAGAGGATCGAG
AGGATCGCGGGAGTACTCACCATAATCAGCAGCAGCAGTCTGGGTTATTG
GGAGAATGAGCGGGCTGACGCGGCACGGGACTGTCGAAGCCGTCTCGTGA
GACCAAATTTTTAGGCGCGAGCGGGGACAGGGGAAAATAATTCTTCCTGT
TCAGCTGACTACAAGCCGAAAGCAAGCATATCTGGTTGATCCATCATGAC
CACACGTTCTTTACACCACAAGAGGCGTTATGGCATGTCGCCTCTTCTTT
TAATGCCACTATTACTTTTTTTATTTTAGTTCTTACTAGCACGAATTATT
TTTTAACATAAAGCGCACACACATATTGTTTTTCTGTTGATAAAACCTAT
CAGGCGTCTCCTTGGTCCTGGCGAACGATCCTGACGGGGATAGGCTCGCG
GCGGCAGAGAGGCAGCCCTCGGGACGCTGGCATGTGTTTTCCGGCAATGA
GATCGGAGTGCTTATGGGTATGTGGCAGTGGGAAGAATGGCGGCGGATTC
ATCCCAACGAGGATCCCTCCAAGGCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig101722:440..1619-

>mRNA_H-elongata_contig101722.147.1 ID=mRNA_H-elongata_contig101722.147.1|Name=mRNA_H-elongata_contig101722.147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig101722:440..1619- (Himanthalia elongata Himel1 dioecious)
ATGCATGGCGTCGGGGATCAGTGGGCTCGCCGCGCTTTCGGGTGCTTCTC
GCTTCCCCCCTTCTTATCAGTGGAGAGCCAAAGGGAGCCCGACCCAGAGT
TCCCCACGTTGGCGTTTCCCAATCCAGAAGAACCTGGGGCGCTGGACGAG
GCGATAGCCCTGGCGGAGACGAAAGGCGAGGGAAAATCGATTAATATGCA
TGGCGTCGGGGATCAGTGGGCTCGCCGCGCTTTCGGGTGCTTCTCGCTTC
CCCCCTTCTTATCAGTGGAGAGCCAAAGGGAGCCCGACCCAGAGTTCCCC
ACGTTGGCGTTTCCCAATCCAGAAGAACCTGGGGCGCTGGACGAGGCGAT
AGCCCTGGCGGAGACGAAAGGCGAGGGAAAATCGATTAATGCGTCTCCTT
GGTCCTGGCGAACGATCCTGACGGGGATAGGCTCGCGGCGGCAGAGAGGC
AGCCCTCGGGACGCTGGCATGTGTTTTCCGGCAATGAGATCGGAGTGCTT
ATGGGTATGTGGCAGTGGGAAGAATGGCGGCGGATTCATCCCAACGAGGA
TCCCTCCAAGGCGGTGAGCGTCTCCTTGGTCCTGGCGAACGATCCTGACG
GGGATAGGCTCGCGGCGGCAGAGAGGCAGCCCTCGGGACGCTGGCATGTG
TTTTCCGGCAATGAGATCGGAGTGCTTATGGGTATGTGGCAGTGGGAAGA
ATGGCGGCGGATTCATCCCAACGAGGATCCCTCCAAGGCGGTGA
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