mRNA_H-elongata_contig101717.146.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI) HSP 1 Score: 158 bits (400), Expect = 7.780e-46 Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 1
Query: 1 DIKERDWRLFRKNLISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAESQV 312
++K RDWRLFRKNLI++YG+D K W DGCWAH+IG +E GCLL+ATE I G FHQSVILVLSH +D GT+GLILNRPG QRL SL GL+ DLAEVF +SQV
Sbjct: 89 EVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQV 192
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.580e-23 Identity = 46/107 (42.99%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 1 DIKERDWRLFRKNLISQYGQDSTKA---GWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAESQV 312
D+K +DWR FR NL+ + ++ A GW G WAH+IG +E GC+LLA E++ +G F+Q+V+L+L H GT+GLI+NRP ++R+ + GL D+ F + V
Sbjct: 61 DVKSKDWRAFRANLVRRSAEEGFGAPHRGWSGGKWAHDIGCVEKGCVLLAHESL-EGVFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPV 166
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.820e-23 Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 1 DIKERDWRLFRKNLISQ-----YGQDST----KAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAESQV 312
D+K+ DWR FR NL+ + +G S + W D WAHEIG +E GC+LLA E + G FHQ+ +LVL H + GT+GLILNRP ++R+ + GL D+ F + V
Sbjct: 51 DVKQLDWRAFRANLVRRSREEGFGGSSAXXXARRKWRDDAWAHEIGVVEKGCVLLAHETL-QGVFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAV 162
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A7S2Y026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y026_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 8.580e-21 Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 1 DIKERDWRLFRKNLISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAES 306
D+ DWR FR L++QY + W + WAH+IG+IE GCLLLA++ + D F QSVILVL+H D GT G++LNRP + ++ + L E F E+
Sbjct: 65 DVGNVDWRDFRAKLVAQYS-GKERENWTEDRWAHDIGQIENGCLLLASDVMDDDTFWQSVILVLNHDPDNGTFGIVLNRPTGAHVCNVRDIVPALREAFGEA 165
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: R7QN66_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN66_CHOCR) HSP 1 Score: 70.9 bits (172), Expect = 1.800e-12 Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 16 DWRLFRKNLISQYGQDSTKAGWEDGC-WAHEIGKIEPGCLLLATEAIWDGP-----FHQSVILVLSHHQDLGTVGLILNRP 240
DWR FR L+ Q Q +T AG WAHE+ +E GCLL+A+ + G F SV+LVL+HH D GTVG+ILNRP
Sbjct: 42 DWRSFRARLV-QTEQTTTPAGEPSTKEWAHEVPFVEAGCLLIASPEHFVGEHSCSFFANSVVLVLTHHSDKGTVGVILNRP 121
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A6S8JKM4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8JKM4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.910e-12 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 94 WAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQ---QRLNSLAGLKSDLAEVFAESQ 309
WAHEI IEPGC+LLA E + G FHQ+V+L++ HH+ GT G+++NRP + ++ S G K DL+ A S+
Sbjct: 179 WAHEIPNIEPGCVLLANEKL-GGVFHQTVVLIIEHHETTGTFGVVINRPMEGDLSKVGSEPGSKLDLSLKMAFSK 252
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A7S1BIP2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIP2_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.440e-12 Identity = 36/97 (37.11%), Postives = 61/97 (62.89%), Query Frame = 1
Query: 40 LISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAG--LKSDLAEV----FAESQV 312
++S T + + WAH + +E GCLLLA+E + G FHQ+V+L++SH+ +LG++G+++NRP +++ L+G KS + + FAES V
Sbjct: 237 MLSIQETAQTDFAFNENRWAHPLSHVEKGCLLLASEKL-GGIFHQTVVLIISHNDNLGSMGVVINRPLGKKIKELSGPARKSTIPDAMRSSFAESTV 332
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A5J4XP12_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XP12_9CHLO) HSP 1 Score: 68.9 bits (167), Expect = 1.470e-11 Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1
Query: 1 DIKERDWRLFRKNLIS----QYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIW---DGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAES 306
D K DWR FR L++ Q G+ ST +G WAH++GK E GCLLLA ++ G F Q+VI L H D + G ILN+P + L L G +L FA++
Sbjct: 103 DPKTVDWREFRARLVAGDRGQQGEVSTSTA--NGRWAHDVGKPEKGCLLLAHPLMFGSSQGYFSQAVIF-LFEHDDTASAGFILNKPTEHVLGKLVGA-DNLCPEFADN 207
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A1E7FAB9_9STRA (DUF179-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAB9_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.880e-11 Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 94 WAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLA 267
WAHEI IEPGC+L+A E + G FHQ++IL++ HH+ GT G+++NRP ++ + +A
Sbjct: 203 WAHEIDHIEPGCVLIANEKL-GGVFHQTIILIVDHHEKTGTTGVVINRPFEEDVMKIA 259
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A6S8S5M8_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8S5M8_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 2.520e-11 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 94 WAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLA 267
WAH IG IEPGC+L+A E + G FHQ+V+L++ HH+ GT G+++NRP + L +A
Sbjct: 218 WAHPIGHIEPGCVLIANEKL-GGVFHQTVVLIIEHHEKKGTTGIVINRPLRGNLFKVA 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101717.146.1 >prot_H-elongata_contig101717.146.1 ID=prot_H-elongata_contig101717.146.1|Name=mRNA_H-elongata_contig101717.146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp DIKERDWRLFRKNLISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAback to top mRNA from alignment at H-elongata_contig101717:105..1045- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101717.146.1 ID=mRNA_H-elongata_contig101717.146.1|Name=mRNA_H-elongata_contig101717.146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=941bp|location=Sequence derived from alignment at H-elongata_contig101717:105..1045- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101717:105..1045- >mRNA_H-elongata_contig101717.146.1 ID=mRNA_H-elongata_contig101717.146.1|Name=mRNA_H-elongata_contig101717.146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig101717:105..1045- (Himanthalia elongata Himel1 dioecious)back to top |