mRNA_H-elongata_contig101717.146.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101717.146.1
Unique NamemRNA_H-elongata_contig101717.146.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 7.780e-46
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 DIKERDWRLFRKNLISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAESQV 312
            ++K RDWRLFRKNLI++YG+D  K  W DGCWAH+IG +E GCLL+ATE I  G FHQSVILVLSH +D GT+GLILNRPG QRL SL GL+ DLAEVF +SQV
Sbjct:   89 EVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQV 192          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.580e-23
Identity = 46/107 (42.99%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 DIKERDWRLFRKNLISQYGQDSTKA---GWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAESQV 312
            D+K +DWR FR NL+ +  ++   A   GW  G WAH+IG +E GC+LLA E++ +G F+Q+V+L+L H    GT+GLI+NRP ++R+  + GL  D+   F +  V
Sbjct:   61 DVKSKDWRAFRANLVRRSAEEGFGAPHRGWSGGKWAHDIGCVEKGCVLLAHESL-EGVFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPV 166          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.820e-23
Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 DIKERDWRLFRKNLISQ-----YGQDST----KAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAESQV 312
            D+K+ DWR FR NL+ +     +G  S     +  W D  WAHEIG +E GC+LLA E +  G FHQ+ +LVL H  + GT+GLILNRP ++R+  + GL  D+   F +  V
Sbjct:   51 DVKQLDWRAFRANLVRRSREEGFGGSSAXXXARRKWRDDAWAHEIGVVEKGCVLLAHETL-QGVFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAV 162          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A7S2Y026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y026_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.580e-21
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 DIKERDWRLFRKNLISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAES 306
            D+   DWR FR  L++QY     +  W +  WAH+IG+IE GCLLLA++ + D  F QSVILVL+H  D GT G++LNRP    + ++  +   L E F E+
Sbjct:   65 DVGNVDWRDFRAKLVAQYS-GKERENWTEDRWAHDIGQIENGCLLLASDVMDDDTFWQSVILVLNHDPDNGTFGIVLNRPTGAHVCNVRDIVPALREAFGEA 165          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: R7QN66_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN66_CHOCR)

HSP 1 Score: 70.9 bits (172), Expect = 1.800e-12
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   16 DWRLFRKNLISQYGQDSTKAGWEDGC-WAHEIGKIEPGCLLLATEAIWDGP-----FHQSVILVLSHHQDLGTVGLILNRP 240
            DWR FR  L+ Q  Q +T AG      WAHE+  +E GCLL+A+   + G      F  SV+LVL+HH D GTVG+ILNRP
Sbjct:   42 DWRSFRARLV-QTEQTTTPAGEPSTKEWAHEVPFVEAGCLLIASPEHFVGEHSCSFFANSVVLVLTHHSDKGTVGVILNRP 121          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A6S8JKM4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8JKM4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.910e-12
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   94 WAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQ---QRLNSLAGLKSDLAEVFAESQ 309
            WAHEI  IEPGC+LLA E +  G FHQ+V+L++ HH+  GT G+++NRP +    ++ S  G K DL+   A S+
Sbjct:  179 WAHEIPNIEPGCVLLANEKL-GGVFHQTVVLIIEHHETTGTFGVVINRPMEGDLSKVGSEPGSKLDLSLKMAFSK 252          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A7S1BIP2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIP2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.440e-12
Identity = 36/97 (37.11%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   40 LISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAG--LKSDLAEV----FAESQV 312
            ++S      T   + +  WAH +  +E GCLLLA+E +  G FHQ+V+L++SH+ +LG++G+++NRP  +++  L+G   KS + +     FAES V
Sbjct:  237 MLSIQETAQTDFAFNENRWAHPLSHVEKGCLLLASEKL-GGIFHQTVVLIISHNDNLGSMGVVINRPLGKKIKELSGPARKSTIPDAMRSSFAESTV 332          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A5J4XP12_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XP12_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 1.470e-11
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    1 DIKERDWRLFRKNLIS----QYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEAIW---DGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFAES 306
            D K  DWR FR  L++    Q G+ ST     +G WAH++GK E GCLLLA   ++    G F Q+VI  L  H D  + G ILN+P +  L  L G   +L   FA++
Sbjct:  103 DPKTVDWREFRARLVAGDRGQQGEVSTSTA--NGRWAHDVGKPEKGCLLLAHPLMFGSSQGYFSQAVIF-LFEHDDTASAGFILNKPTEHVLGKLVGA-DNLCPEFADN 207          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A1E7FAB9_9STRA (DUF179-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAB9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.880e-11
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   94 WAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLA 267
            WAHEI  IEPGC+L+A E +  G FHQ++IL++ HH+  GT G+++NRP ++ +  +A
Sbjct:  203 WAHEIDHIEPGCVLIANEKL-GGVFHQTIILIVDHHEKTGTTGVVINRPFEEDVMKIA 259          
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Match: A0A6S8S5M8_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8S5M8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.520e-11
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   94 WAHEIGKIEPGCLLLATEAIWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLA 267
            WAH IG IEPGC+L+A E +  G FHQ+V+L++ HH+  GT G+++NRP +  L  +A
Sbjct:  218 WAHPIGHIEPGCVLIANEKL-GGVFHQTVVLIIEHHEKKGTTGIVINRPLRGNLFKVA 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101717.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G0S7_ECTSI7.780e-4670.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6U1_9STRA1.580e-2342.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CNM8_9STRA1.820e-2343.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y026_9STRA8.580e-2144.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R7QN66_CHOCR1.800e-1249.38Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6S8JKM4_9STRA1.910e-1246.67Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1BIP2_9STRA5.440e-1237.11Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A5J4XP12_9CHLO1.470e-1140.37Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A1E7FAB9_9STRA1.880e-1148.28DUF179-domain-containing protein n=1 Tax=Fragilari... [more]
A0A6S8S5M8_9STRA2.520e-1150.00Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101717contigH-elongata_contig101717:105..1045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue6.7e-37
Seed eggNOG ortholog2880.D7G0S7
KEGG koko:K07735
EggNOG free text desc.Uncharacterized ACR, COG1678
EggNOG OGs2QRDU@2759,COG1678@1
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-23_001700.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.5142407-CDS-H-elongata_contig101717:104..2931622929556.5142407-CDS-H-elongata_contig101717:104..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101717 105..293 -
1691679068.7661524-CDS-H-elongata_contig101717:104..2931691679068.7661524-CDS-H-elongata_contig101717:104..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101717 105..293 -
1622929556.5347376-CDS-H-elongata_contig101717:922..10451622929556.5347376-CDS-H-elongata_contig101717:922..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101717 923..1045 -
1691679068.7768593-CDS-H-elongata_contig101717:922..10451691679068.7768593-CDS-H-elongata_contig101717:922..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101717 923..1045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101717.146.1prot_H-elongata_contig101717.146.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101717 105..1045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101717.146.1

>prot_H-elongata_contig101717.146.1 ID=prot_H-elongata_contig101717.146.1|Name=mRNA_H-elongata_contig101717.146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
DIKERDWRLFRKNLISQYGQDSTKAGWEDGCWAHEIGKIEPGCLLLATEA
IWDGPFHQSVILVLSHHQDLGTVGLILNRPGQQRLNSLAGLKSDLAEVFA
ESQV
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mRNA from alignment at H-elongata_contig101717:105..1045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101717.146.1 ID=mRNA_H-elongata_contig101717.146.1|Name=mRNA_H-elongata_contig101717.146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=941bp|location=Sequence derived from alignment at H-elongata_contig101717:105..1045- (Himanthalia elongata Himel1 dioecious)
GATATAAAGGAGCGCGACTGGCGATTGTTTCGCAAGAACCTCATCAGCCA GTACGGTCAGGACTCTACGAAGGCGGGCTGGGAGGACGGCTGCTGGGCTC ACGAGATCGGGAAGATAGAGCCGGTGAGCCGCGCAAGTCCGCGTATCGCG TCTTTGGATATGGTGTAATTTTTAGCGGCCAGAGGAAAGAAACCCTGGGA CGGTGGGACTATTTGACATCACCGGCGACTCTCCTCGACGCATCTATGTT ATAGTTAGTGGAGCCACAGTTGACGGTTTCCGCAGCTCCCGGTGCGCCAC ACCCCGACCAAGACACGCTCCAAAGAGGCTTCTACTTAGTCCTACCGGTT CTTTCGCGTTTCTTCTATTGCCTAGTAGGCAGCCACTTCGAAAACCGCGT GTGGGGCTCGAGATTTTTTGCATACCTCTGACGGGGTGGTGCTGTAATAG TGCTGGTTGTTAATAGACATGTTATGCCCTCGATGGTGATAGTCCCACCC CTCGCACGCCCGCGACACTGCTGGTATGTGTTAGGGTTCGGCAGATGCAC ATGAAGTTGTTTGCTCGGCCCGTTTCTCGCTCCTGTGGCCAAACAGTCGC TGCTTCCGGTCACCGATTTCTCTTCTGAAAACACTCACGCTCGAACGCGT GTCACGTCTCGCCCGAAGCCGTCCCTTGTTGACGTAAACAAGCTATAATA CTGGTACACCATACTTACTGCCCCCCTCCCCCCTCTCCCCCTCGAGGCGC AGGGTTGCCTACTGCTCGCAACTGAAGCAATCTGGGACGGACCTTTCCAC CAGTCCGTCATCCTGGTTCTCAGCCATCACCAAGACTTGGGCACCGTGGG GCTCATTCTGAACCGCCCGGGGCAGCAGCGTCTAAACTCTTTAGCCGGCC TCAAATCGGACCTTGCAGAAGTTTTCGCCGAGTCCCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig101717:105..1045-

>mRNA_H-elongata_contig101717.146.1 ID=mRNA_H-elongata_contig101717.146.1|Name=mRNA_H-elongata_contig101717.146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig101717:105..1045- (Himanthalia elongata Himel1 dioecious)
GATATAAAGGAGCGCGACTGGCGATTGTTTCGCAAGAACCTCATCAGCCA
GTACGGTCAGGACTCTACGAAGGCGGGCTGGGAGGACGGCTGCTGGGCTC
ACGAGATCGGGAAGATAGAGCCGGATATAAAGGAGCGCGACTGGCGATTG
TTTCGCAAGAACCTCATCAGCCAGTACGGTCAGGACTCTACGAAGGCGGG
CTGGGAGGACGGCTGCTGGGCTCACGAGATCGGGAAGATAGAGCCGGGTT
GCCTACTGCTCGCAACTGAAGCAATCTGGGACGGACCTTTCCACCAGTCC
GTCATCCTGGTTCTCAGCCATCACCAAGACTTGGGCACCGTGGGGCTCAT
TCTGAACCGCCCGGGGCAGCAGCGTCTAAACTCTTTAGCCGGCCTCAAAT
CGGACCTTGCAGAAGTTTTCGCCGAGTCCCAGGTAGGTTGCCTACTGCTC
GCAACTGAAGCAATCTGGGACGGACCTTTCCACCAGTCCGTCATCCTGGT
TCTCAGCCATCACCAAGACTTGGGCACCGTGGGGCTCATTCTGAACCGCC
CGGGGCAGCAGCGTCTAAACTCTTTAGCCGGCCTCAAATCGGACCTTGCA
GAAGTTTTCGCCGAGTCCCAGGTA
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