mRNA_H-elongata_contig101701.145.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: D7FJQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ9_ECTSI) HSP 1 Score: 202 bits (513), Expect = 4.640e-63 Identity = 95/123 (77.24%), Postives = 110/123 (89.43%), Query Frame = 1 Query: 1 PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369 P+NLAKVAASIEARK+KEA+ VPEALGALARDPQQMELSGAGL AKR++D+MVELTW TGNE+GN+GF++SRR KTD W+EIASY FPPLNSKGP GG YT+ D+ V+ GTWVYR+SDISK Sbjct: 97 PENLAKVAASIEARKEKEANTVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISK 219
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A835Z5V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V8_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.790e-43 Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 1 Query: 1 PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDIS 366 P+N+AKV A++EAR+ + + V E++G LARDPQ MELSG GL K++ + VEL W TG+E GN+GFV+S+R+GKTD W +IASY + PLNSKG GG YTFVD E+GTWVYRVSD++ Sbjct: 93 PENIAKVEAAMEARRLAKLNTVAESVGDLARDPQAMELSGLGLNIKQVNGNDVELEWKTGDEAGNLGFVVSKRRGKTDEWTQIASYKDWAPLNSKGEQGGRYTFVDPDCEQGTWVYRVSDVN 214
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A6V1RAY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RAY1_HETAK) HSP 1 Score: 126 bits (316), Expect = 1.840e-33 Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 1 Query: 34 EARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDIS 366 E R+ ++A A GAL DPQ MELSG GLK K + D+ E++W TG+E GN GF+I++R+G +D W+ +ASY + PLNSKGP+GG YT++D E+GTW+YRVSD++ Sbjct: 100 EDRRARKAAEKKAAQGALLVDPQAMELSGVGLKTKMVGDEC-EISWGTGDETGNKGFIITKRRGGSDDWQVVASYTDWAPLNSKGPAGGQYTYMDSDTEQGTWIYRVSDVN 209
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S3U5L1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5L1_9SPIT) HSP 1 Score: 116 bits (290), Expect = 2.150e-29 Identity = 59/122 (48.36%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 1 PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMEL-SGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEE-GTWVYRVSD 360 P+ +A+ A +ARK+++ E L L+ DPQ EL +G GLK+K I++D VEL W+TGNE+GN GF++ RRKG +D +E++A++ F PL SKG GG+YT++D+ V GTWVYR+ D Sbjct: 95 PEAIARAEAERKARKERQMAAAKE-LDTLSIDPQAAELGAGGGLKSKIISEDEVELKWSTGNEEGNAGFIVQRRKGGSDSFEDLATFENFAPLKSKGVDGGSYTYLDDTVPTPGTWVYRILD 215
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S2ZH05_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZH05_9RHOD) HSP 1 Score: 114 bits (286), Expect = 9.210e-29 Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 1 Query: 70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369 +A+G+L DPQ EL+G GLK K + D+++ LTW+TG+E+ N GFVI +RKGKTD W +IA +++ P L SKG GG Y+++D+ E GTW+YRVSDI K Sbjct: 132 DAVGSLRTDPQAQELAGVGLKYKSLGDELL-LTWSTGSERSNQGFVIRKRKGKTDEWIKIADFDSHPAELTSKGAQGGDYSWLDKSPEPGTWIYRVSDIDK 231
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S0T6E7_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6E7_9RHOD) HSP 1 Score: 112 bits (280), Expect = 7.600e-28 Identity = 50/101 (49.50%), Postives = 76/101 (75.25%), Query Frame = 1 Query: 70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369 +A+G +A+DPQQ EL+G+GLK K + D++ ELTW TG+E GNVGF++ +R+GK+D +E + Y + P SKGP+GG Y+++ E GTW+YRVSD+++ Sbjct: 135 DAVGKMAKDPQQQELAGSGLKWKLLGDEL-ELTWATGDETGNVGFMLQKRRGKSDKFELVDDYKSLPATFQSKGPAGGVYSYLGPKPEPGTWIYRVSDVAE 234
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A5J4YVV1_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVV1_PORPP) HSP 1 Score: 109 bits (273), Expect = 1.020e-26 Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369 +A G LA DPQ EL+G GL+AK + D++ EL W TG+E GN GF++SRR+GK + +E +A Y + P SKGP+GG+Y+++ E E GTWVYR+SD+ + Sbjct: 120 DARGRLAGDPQAQELAGTGLRAKFLGDEL-ELAWQTGDETGNTGFILSRRRGKEEEFETVADYKSDPATFKSKGPAGGSYSYLCEKPEAGTWVYRISDVDE 219
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A1X6P4S7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4S7_PORUM) HSP 1 Score: 107 bits (268), Expect = 2.620e-26 Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEG-VEEGTWVYRVSDISK 369 +A G LA DPQ EL+G GLK RI D V+L W TG E N+GF + RR GK+D WE +A Y T P L SKG GG+YTF+D GTW+YRVSD+SK Sbjct: 110 DAKGRLANDPQAGELAGVGLKG-RILGDEVDLRWDTGTEVNNLGFKVMRRAGKSDKWEFVADYQTAPSELQSKGSEGGSYTFIDSSNPPPGTWIYRVSDVSK 210
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S0LGF4_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGF4_9EUKA) HSP 1 Score: 107 bits (267), Expect = 5.240e-26 Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1 Query: 82 ALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEE-GTWVYRVSD 360 A+ DPQ EL G GL +K ++++ +EL W+TG E GNVGF++ RR G +D +E IASY L SKGP+GGTYT++D+ V GTWVYRV D Sbjct: 122 AMELDPQAAELGGGGLTSKVLSEEEIELRWSTGGEVGNVGFIVQRRPGGSDNFESIASYEEVGALKSKGPAGGTYTYLDDTVPRVGTWVYRVLD 215
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A1Z5K495_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K495_FISSO) HSP 1 Score: 104 bits (259), Expect = 5.350e-25 Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 40 RKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369 RK+KE + + G+L RD ELSG GLK K + D VEL WTTG E GF++ RR KT+ +E +ASY + PL SKG SGG Y F+D+ VE G WVYRV++ K Sbjct: 100 RKRKEQET--QVQGSLLRDSAFQELSGTGLKYK-VIDGAVELEWTTGEESNTQGFIVKRRPAKTEKFEVLASYANYGPLQSKGSSGGVYRFLDDQVEPGGWVYRVTEKDK 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101701.145.1 >prot_H-elongata_contig101701.145.1 ID=prot_H-elongata_contig101701.145.1|Name=mRNA_H-elongata_contig101701.145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADback to top mRNA from alignment at H-elongata_contig101701:226..1511- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101701.145.1 ID=mRNA_H-elongata_contig101701.145.1|Name=mRNA_H-elongata_contig101701.145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1286bp|location=Sequence derived from alignment at H-elongata_contig101701:226..1511- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101701:226..1511- >mRNA_H-elongata_contig101701.145.1 ID=mRNA_H-elongata_contig101701.145.1|Name=mRNA_H-elongata_contig101701.145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig101701:226..1511- (Himanthalia elongata Himel1 dioecious)back to top |