mRNA_H-elongata_contig101631.140.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI) HSP 1 Score: 167 bits (422), Expect = 5.300e-50 Identity = 81/123 (65.85%), Postives = 97/123 (78.86%), Query Frame = 1 Query: 1 TASTPFGEKDEEWAKVHLALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLGCSIDKAEK 369 TASTPFG++ ++ A VHLALLL LDDVNN RHLWRRLPA+AK+ GGE +ALW VGK LWKR++ AQAAL+ REWS PLA YV+L+ R+ ERQL II K F LPLE VA +L CS++ AEK Sbjct: 38 TASTPFGQQHQDAANVHLALLLALDDVNNARHLWRRLPAAAKAAGGETAALWEVGKSLWKRDMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEK 160
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A7S2FNN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNN9_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 5.980e-19 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 1 Query: 1 TASTPFGEKDEEWAKVHLALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLG 345 T STP + H+ + ++L+D++N RHLWRR+ K+ G EL A W VGK LWKR I A AALQ R WS LA + L + + E + ++ K + ++ + A LG Sbjct: 28 TCSTPNTDAAPARYARHIMVYMILNDLDNARHLWRRIDEGIKAGGSELEATWEVGKLLWKREISAAYAALQ-RTWSAELAPLATALLEAVREHEFALLGKAYTNVGVSTAAAALG 141
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A6P8Y321_THRPL (COP9 signalosome complex subunit 8 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y321_THRPL) HSP 1 Score: 85.9 bits (211), Expect = 1.630e-18 Identity = 46/122 (37.70%), Postives = 77/122 (63.11%), Query Frame = 1 Query: 7 STPFGEKD-EEWAKVHLALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLGCSIDKAEK 369 ++P GE +E+A++ LA+ L D+ N + LW+R+PASAKS ELS +W VG+C+WKR+ A AALQ WS + ++ L++ L R + +I+ ++S+ L +A + G + +AE+ Sbjct: 19 TSPTGEASPQEYAQL-LAIYLCQSDLCNAKFLWKRIPASAKSSNEELSLIWKVGQCMWKRDYPAAYAALQA-PWSDNVRHIMTTLQEELRSRAIDLIANAYSSIALSDLAAMAGINDREAER 138
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A3R7J8J7_9STRA (COP9 signalosome complex subunit 8 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8J7_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.440e-15 Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 49 HLALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLG 345 +L ++L+ ++N+ R LW+R+ AK EL A+WG+GK LW RN+ GA AA+ REWS L + LR E ++S+ ++++ + VA LG Sbjct: 66 YLLIVLLSQNLNDARFLWKRISPEAKHNSEELQAVWGIGKALWDRNLAGAYAAMD-REWSPSLQELIEALRTSTRESTAELLSRAYSTISVNDVALALG 163
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A6J1T3B4_FRAOC (COP9 signalosome complex subunit 8 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T3B4_FRAOC) HSP 1 Score: 75.5 bits (184), Expect = 1.680e-14 Identity = 41/121 (33.88%), Postives = 73/121 (60.33%), Query Frame = 1 Query: 10 TPFGEKD-EEWAKVHLALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLGCSIDKAEK 369 +P GE +E+A++ LA+ L D+ N + LW+R+P S K+ ELS +W VG+C+WKR+ A +ALQ WS + + L+D L R + +I+ ++S+ + ++ + G + +AE+ Sbjct: 20 SPTGEATAQEYAQL-LAIYLCQSDLCNAKFLWKRIPTSLKNSHDELSLIWKVGQCMWKRDYPAAYSALQV-SWSDNVRHIMLALQDELRTRAVDLIANAYSSITVSDLSAMAGINDREAER 138
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A7S2SPW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW3_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.510e-14 Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1 Query: 52 LALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRN-IQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLGCSID 357 L L L+L+D++N RHLWRR+ S K++G EL + V LW+R+ I GA L+G EWS L + LRD L +RQL + K + S+ L LG + D Sbjct: 77 LFLYLILNDMHNARHLWRRIDDSCKTDGSELVKVHAVASLLWQRSDIPGAFNLLRG-EWSETLKPLATALRDGLQKRQLSLFEKAYTSVTLSTATAALGFTSD 178
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A2D4BXT1_PYTIN (COP9 signalosome complex subunit, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXT1_PYTIN) HSP 1 Score: 71.6 bits (174), Expect = 1.150e-12 Identity = 32/111 (28.83%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 31 EEWAKVHLALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLGCSIDKA 363 E++ +L ++L+ ++N+ R LW+R+P+ K L ++W +GK LWKR+ + AA+ R+W + ++LLR+ E ++ ++++PL+ A LG + A Sbjct: 71 EQFYASYLVIVLLAQNLNDARFLWKRIPSETKQLSDLLPSVWSIGKALWKRDFAASYAAMN-RDWPEGVRELIALLRESTRESAAELLGVAYSTIPLKEAAVALGFDDESA 180
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A5D6YG19_9STRA (COP9 signalosome complex subunit 8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YG19_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.010e-12 Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 1 Query: 52 LALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLG 345 L +LL+ +D+N R LW+R+PA+ KSE L WG+GK LW+R+ A A+ + W L A V LLR E ++S ++++ A LG Sbjct: 69 LLVLLLAEDLNGARFLWKRIPATLKSESETLCKTWGIGKALWQRDFAAAYNAMD-QPWPQELQALVELLRASTRESTAELLSAAYSTISTHDAAQALG 165
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A383WK66_TETOB (COP9 signalosome complex subunit 8 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WK66_TETOB) HSP 1 Score: 70.1 bits (170), Expect = 2.520e-12 Identity = 34/102 (33.33%), Postives = 56/102 (54.90%), Query Frame = 1 Query: 46 VHLALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLGCS 351 +HL L+ + + + R LW+RLP K + EL A+W + + W ++ QG ALQG +WS + +V L + L ++S+G++ L + A LLG S Sbjct: 46 LHLLGLIYIQQLEDARFLWKRLPIDVKRDNPELDAVWRLLQYFWNQHYQGIWQALQGYQWSPQVRPFVDALVAKTRSDMLALLSEGYSLLSPAKAALLLGVS 147
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Match: A0A7S2GZT5_9STRA (COP9 signalosome complex subunit 8 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GZT5_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.010e-8 Identity = 32/103 (31.07%), Postives = 50/103 (48.54%), Query Frame = 1 Query: 52 LALLLVLDDVNNGRHLWRRLPASAKSEGGELSALWGVGKCLWKRNIQGAQAALQGREWSTPLAAYVSLLRDRLWERQLVIISKGFASLPLERVATLLGCSIDK 360 L L L+ +D++N RHLWRR+ K ELSA+W + LW RN + WS +A + + + +RQ ++SK + + L T L D+ Sbjct: 56 LTLYLITNDMDNARHLWRRIGNDFKGVESELSAIWSIASNLWHRNNIPMVFKSLRQTWSPEIAPLMQKFIETIRDRQFELLSKAYMKVTLAATITELSLPEDE 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101631.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101631.140.1 >prot_H-elongata_contig101631.140.1 ID=prot_H-elongata_contig101631.140.1|Name=mRNA_H-elongata_contig101631.140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp TASTPFGEKDEEWAKVHLALLLVLDDVNNGRHLWRRLPASAKSEGGELSAback to top mRNA from alignment at H-elongata_contig101631:212..2225- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101631.140.1 ID=mRNA_H-elongata_contig101631.140.1|Name=mRNA_H-elongata_contig101631.140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2014bp|location=Sequence derived from alignment at H-elongata_contig101631:212..2225- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101631:212..2225- >mRNA_H-elongata_contig101631.140.1 ID=mRNA_H-elongata_contig101631.140.1|Name=mRNA_H-elongata_contig101631.140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig101631:212..2225- (Himanthalia elongata Himel1 dioecious)back to top |