Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Model size | 245 |
| Cds size | 138 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929554.581347-UTR-H-elongata_contig10156:8931..8988 | 1622929554.581347-UTR-H-elongata_contig10156:8931..8988 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10156 8932..8988 - |
| 1691679067.7995627-UTR-H-elongata_contig10156:8931..8988 | 1691679067.7995627-UTR-H-elongata_contig10156:8931..8988 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10156 8932..8988 - |
| 1622929554.6303225-UTR-H-elongata_contig10156:9142..9192 | 1622929554.6303225-UTR-H-elongata_contig10156:9142..9192 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10156 9143..9192 - |
| 1691679067.8280575-UTR-H-elongata_contig10156:9142..9192 | 1691679067.8280575-UTR-H-elongata_contig10156:9142..9192 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10156 9143..9192 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929554.5980132-CDS-H-elongata_contig10156:8988..9079 | 1622929554.5980132-CDS-H-elongata_contig10156:8988..9079 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10156 8989..9079 - |
| 1691679067.8135674-CDS-H-elongata_contig10156:8988..9079 | 1691679067.8135674-CDS-H-elongata_contig10156:8988..9079 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10156 8989..9079 - |
| 1622929554.6121843-CDS-H-elongata_contig10156:9095..9142 | 1622929554.6121843-CDS-H-elongata_contig10156:9095..9142 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10156 9096..9142 - |
| 1691679067.8206215-CDS-H-elongata_contig10156:9095..9142 | 1691679067.8206215-CDS-H-elongata_contig10156:9095..9142 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10156 9096..9142 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10156.133.1 >prot_H-elongata_contig10156.133.1 ID=prot_H-elongata_contig10156.133.1|Name=mRNA_H-elongata_contig10156.133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MTSYYRRRAFRSSSQPILKGLSNLAGLVWQPIGCCIRSDDLQGVL* back to topmRNA from alignment at H-elongata_contig10156:8932..9192- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10156.133.1 ID=mRNA_H-elongata_contig10156.133.1|Name=mRNA_H-elongata_contig10156.133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig10156:8932..9192- (Himanthalia elongata Himel1 dioecious)
GGTGAAGATGTCACCTGCGTCATCTCTGGTATTGTGCAGCTCATTGAGGA
ATGACAAGTTACTATAGAAGACGAGCGTTCCGAAGCTCATCCCAGCCGTT
AAAAATATCCAAGGATATTGAAGGGGCTTTCTAATCTAGCCGGCTTAGTT
TGGCAACCAATCGGCTGTTGTATTCGCAGTGATGATCTGCAAGGCGTCCT
GTGACTGCTCCACTAGGTCTATTTGGTCCCGATTTTGTAAGCTTCAGCAT
CCCGAAGAATG back to topCoding sequence (CDS) from alignment at H-elongata_contig10156:8932..9192- >mRNA_H-elongata_contig10156.133.1 ID=mRNA_H-elongata_contig10156.133.1|Name=mRNA_H-elongata_contig10156.133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig10156:8932..9192- (Himanthalia elongata Himel1 dioecious)
ATGACAAGTTACTATAGAAGACGAGCGTTCCGAAGCTCATCCCAGCCATG
ACAAGTTACTATAGAAGACGAGCGTTCCGAAGCTCATCCCAGCCGATATT
GAAGGGGCTTTCTAATCTAGCCGGCTTAGTTTGGCAACCAATCGGCTGTT
GTATTCGCAGTGATGATCTGCAAGGCGTCCTGTGAGATATTGAAGGGGCT
TTCTAATCTAGCCGGCTTAGTTTGGCAACCAATCGGCTGTTGTATTCGCA
GTGATGATCTGCAAGGCGTCCTGTGA back to top
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