mRNA_H-elongata_contig10155.132.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.330e-19 Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 F VGDYV+VARV++ G KL TW GPWRVV +HV+ V++IV G+ ++VHV R+R YADS L V +++++ Sbjct: 15 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKD 88
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 3.860e-18 Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 F VGDYV+VARV++ G KL TW GPWRVV +HV+ V++IV G+ ++VHV R+R YADS L V +++++ Sbjct: 270 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKD 343
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 5.110e-18 Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 F VGDYV+VARV++ G KL TW GPWRVV +HV+ V++IV G+ ++VHV R+R YADS L V +++++ Sbjct: 1493 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKD 1566
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A225W8R8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W8R8_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 6.840e-10 Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 F+VGDYVL +R+ + KL++ W+GP+R++ H ++ +VT + EVH R++ YAD+ L + AE+RE Sbjct: 1024 FDVGDYVLWSRIDERLPNNKLLEQWLGPFRIIEA-QPHAFNIQHLVTNKVYEVHGTRLKYYADADLNMDAEMRE 1096
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 1.400e-8 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 Query: 70 TWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGA 210 TW GPWR+V HV V++IV GE ++VHV R+R YAD+SL + A Sbjct: 2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITA 48
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: W2KEB9_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KEB9_PHYPR) HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7 Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1 Query: 1 FEVGDYVLVARV-KKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 F GDYVL + V +K G KL+ TW+GP+R++ + H ++E ++TG +VHV R++ YAD+SL V E+ E Sbjct: 591 FTEGDYVLRSIVDEKSGN--KLLVTWVGPYRILRADA-HSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLE 662
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: V9EDH7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9EDH7_PHYPR) HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7 Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1 Query: 1 FEVGDYVLVARV-KKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 F GDYVL + V +K G KL+ TW+GP+R++ + H ++E ++TG +VHV R++ YAD+SL V E+ E Sbjct: 819 FTEGDYVLRSIVDEKSGN--KLLVTWVGPYRILRADA-HSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLE 890
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6G0MN46_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MN46_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7 Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 FEVGD+VL +R+ + KL+ W+GP++V+ H V++ +++G +VHV R++ YAD+ L E+ E Sbjct: 1267 FEVGDFVLWSRIDQRLSNNKLLGQWVGPFKVIEA-KPHSFVIQHLISGREYDVHVSRLKFYADAELNQTEELLE 1339
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A225UQG0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG0_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.350e-7 Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1 Query: 1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 F VGDYVL +RV + KL+ TW+GP+++ H V +VTG +VH+ R++ YAD SL + E+R+ Sbjct: 425 FSVGDYVLRSRVDQKHH-DKLLVTWVGPYQITRA-DPHSFQVRHLVTGALTDVHLSRLKFYADISLSITEELRD 496
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6A3DQC9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DQC9_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.370e-7 Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222 FEVGD+VL +R+ + KL+ W+GP++V+ H V++ +++G +VHV R++ YAD+ L E+ E Sbjct: 520 FEVGDFVLWSRIDQRLPNNKLLGQWVGPFKVIEA-KPHSFVIQHLISGREYDVHVSRLKFYADAELNQTEELLE 592 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10155.132.1 >prot_H-elongata_contig10155.132.1 ID=prot_H-elongata_contig10155.132.1|Name=mRNA_H-elongata_contig10155.132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETback to top mRNA from alignment at H-elongata_contig10155:4815..5036+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10155.132.1 ID=mRNA_H-elongata_contig10155.132.1|Name=mRNA_H-elongata_contig10155.132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig10155:4815..5036+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10155:4815..5036+ >mRNA_H-elongata_contig10155.132.1 ID=mRNA_H-elongata_contig10155.132.1|Name=mRNA_H-elongata_contig10155.132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig10155:4815..5036+ (Himanthalia elongata Himel1 dioecious)back to top |