mRNA_H-elongata_contig101453.128.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.250e-20 Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S +++R QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.720e-20 Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SL+ILRK G G+ + ++S CGVC +GK +Q HPK S +++R QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 303 LVSADTWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLL 407
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 6.750e-20 Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S +++RS QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 235 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLL 339
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.210e-19 Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S +++R QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 415 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 519
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.250e-19 Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S H+++R QL D MGP P G + Y KITD++ K+ L+
Sbjct: 39 LVTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLL 143
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.260e-19 Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ F ++S CGVC + K +Q HPK S +++R QL D +GP P G + Y KITD+Y KV L+
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLL 143
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.130e-19 Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S +++R QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.290e-19 Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S +++R QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.310e-19 Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S +++R QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.360e-19 Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 Query: 79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
+ +A WHRRL HL+A+SLDILRK G G+ + ++S CGVC + K +Q HPK S +++R QL D MGP P G + Y KITD+Y K+ L+
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101453.128.1 >prot_H-elongata_contig101453.128.1 ID=prot_H-elongata_contig101453.128.1|Name=mRNA_H-elongata_contig101453.128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp ESGNLYLFVLDLSADGNGAKEIAMNVVANAQVWHRRLDHLHAQSLDILRKback to top mRNA from alignment at H-elongata_contig101453:48..440- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101453.128.1 ID=mRNA_H-elongata_contig101453.128.1|Name=mRNA_H-elongata_contig101453.128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig101453:48..440- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101453:48..440- >mRNA_H-elongata_contig101453.128.1 ID=mRNA_H-elongata_contig101453.128.1|Name=mRNA_H-elongata_contig101453.128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig101453:48..440- (Himanthalia elongata Himel1 dioecious)back to top |