mRNA_H-elongata_contig10145.127.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: D7G632_ECTSI (Cyclin B1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G632_ECTSI) HSP 1 Score: 533 bits (1373), Expect = 4.960e-179 Identity = 255/292 (87.33%), Postives = 274/292 (93.84%), Query Frame = 3 Query: 522 RLRRCNIPFPELSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLARIPDTGLEAAWSDGLAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVAIDDLPVLPDKPHIPDN 1397 RL+RC +P E+SEHDV DRDDP ACAEY MDMY+R+KELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYL+CHIIDRFCM ENVHRSKLQLVGVTALLIACKYEEI+PTEVRDCVYITDHAYTREEVLEMEQTILRRLKFE++VPTQWTFLVRFLK+AKATDRQ HRAQYYLERCLQEH+ LSFRPSMLAAAS+FLARIPD+G++ AW D LAKFCN PREGLECCAR++IK+L DEPVTASQRHLVAVKKKFLGERFLAVAIDDLP LP KP+I N Sbjct: 199 RLKRCKVPPSEVSEHDVVDRDDPIACAEYAMDMYKRYKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLTCHIIDRFCMQENVHRSKLQLVGVTALLIACKYEEIFPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFELTVPTQWTFLVRFLKIAKATDRQHHRAQYYLERCLQEHEALSFRPSMLAAASVFLARIPDSGIKNAWPDALAKFCNTPREGLECCARLMIKFLLDEPVTASQRHLVAVKKKFLGERFLAVAIDDLPTLPRKPNIASN 490
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A836CA68_9STRA (Cyclin, N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA68_9STRA) HSP 1 Score: 323 bits (828), Expect = 4.380e-101 Identity = 157/255 (61.57%), Postives = 199/255 (78.04%), Query Frame = 3 Query: 618 MYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLARIPDTGLEAAWSDGLAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVAIDDLPVLPDKP 1382 MY R+ +LE Y PTVYMH Q DIN KMR+ILIDWIVEVH KFKLA PTLYL+C+IIDR+CM+E V R KLQLVGVTALL+ACKYEEI+P EVRDCVYITD+ YTRE++LEME ++RRL+++++VPT WTFL R L+VA+AT+ Q RA YY ER LQEHD L+FRPS++AA + +L+R+ D AW L +FC + + L CA M+ +L EPVTA+ RHLVA K+KFL ++FL+V+I++LP LP P Sbjct: 1 MYSRYVDLEAMYAPTVYMHMQEDINEKMRSILIDWIVEVHFKFKLATPTLYLTCNIIDRYCMVEAVTRDKLQLVGVTALLVACKYEEIWPPEVRDCVYITDNTYTREQMLEMEMAMVRRLRYQLTVPTAWTFLARVLRVARATETQFQRACYYSERMLQEHDMLAFRPSLVAATATYLSRLVDIEDAHAWPPVLEEFCGLSVDMLMPCAHMMRSFLEAEPVTANHRHLVAAKRKFLQDKFLSVSIEELPQLPSPP 255
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A7S2GN01_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN01_9STRA) HSP 1 Score: 279 bits (713), Expect = 8.830e-82 Identity = 146/278 (52.52%), Postives = 189/278 (67.99%), Query Frame = 3 Query: 552 ELSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQR--HRAQYYLERCLQEHDGLSFRPSMLAAASIFLA---RIPDTGLEAAWSDGLAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVAIDDLPVL 1370 E+ D DRD+P A EY+ ++Y +K+ E+ P +YMH Q DI +MR+ILIDW+VEVHLKFKL TLYL H+ID+FC +V R +LQLVG+TALLIACKYEEIYP EVRDCVYITDHAYTREEVL ME +L+ ++ I+VPT + FL+R+LKV T ++ RA YY ER LQEHD L ++PS++AAAS++LA PD W + K+ E + CAR + Y+ + PVT S+R L AVKKKF ++FL VA D PV+ Sbjct: 168 EVQHCDEADRDNPLAVVEYIEELYHYYKKAEQIKAPAMYMHRQSDITPRMRSILIDWLVEVHLKFKLVPATLYLCVHLIDQFCSSNDVLRGRLQLVGITALLIACKYEEIYPPEVRDCVYITDHAYTREEVLSMETEMLQHFEYNITVPTGYQFLIRYLKVMGCTPKEAASFRASYYAERSLQEHDMLLYKPSLVAAASVYLALKSERPDP-----WGRVIEKYSGYSLEQITPCARQICHYIRENPVTPSRRPLTAVKKKFETQKFLRVAEDPDPVI 440
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A7S2XS29_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS29_9STRA) HSP 1 Score: 268 bits (685), Expect = 2.880e-77 Identity = 146/297 (49.16%), Postives = 197/297 (66.33%), Query Frame = 3 Query: 552 ELSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLA-RIPDTGL-------EAAWSDG-LAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVAIDDLPVLPDKPHIPDN*ARGAI 1415 E++ HD+ ++DD EYV D+++ +E K P YM Q DIN KMRAIL+DW+VEVH+KF+L TLYL +IIDR+C L N+ RSKLQLVGVTALLIACKYEEIYP EVRDCVYITD AY R+EVL+MEQ IL RL+F+I+VPT + FL RFL + KA+ R AQYY ER LQE+D L FRPS++ AA++ LA P + E D L ++ + CA ++ + + +EPVTAS+R LVAVK+K+ ++++ V+I+ ++P + D G + Sbjct: 188 EIAPHDIHNKDDVLEVTEYVTDIFQYLYHVEAKSWPRGYMEKQQDINAKMRAILVDWLVEVHMKFRLNPETLYLCINIIDRYCNLVNIARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYQRQEVLDMEQDILNRLRFKITVPTPYPFLQRFLTLTKASQLTRFAAQYYTERTLQEYDVLKFRPSLVCAAAVILALNNPAIAIKEGIRNYECPGLDNILLEYTGFAEADILECAAVIARKVGEEPVTASRRQLVAVKRKYDNKKYMNVSIE-----VEQPDVHDIVGAGGV 479
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A7R9W0K7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0K7_9STRA) HSP 1 Score: 265 bits (678), Expect = 5.750e-77 Identity = 140/292 (47.95%), Postives = 193/292 (66.10%), Query Frame = 3 Query: 555 LSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLARIPDTGLEAAWSDGLAK----FCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVAIDDLPVLPDKPHIPDN*ARGAIG 1418 ++ HD +D+D+ A YV D+++ F E + +P +YM Q DIN KMRAIL+DW+VEVH+KF+L TLYL ++IDR+C L V RSKLQLVGVTALLIACKYEEIYP EVRDCVYITD AY R+EVL+MEQ +L+RL+F+I+VPT + FL RFL +AK++ R A YY ER LQEHD L F+PS++A +++ LA E G+ K + R + CA ++ + +EP+TAS+R LVAVK+K+ ++ V++ +P++ D G G Sbjct: 134 MAPHDADDKDNILQVAPYVTDIFQHFYRAEARSSPEMYMDHQADINAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSLVTVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDMLQRLRFKITVPTAYPFLQRFLNMAKSSQLARIAANYYTERTLQEHDLLRFKPSVVAVSAVILALNNPDICEDGDCPGMPKILVEYTGFERSEIIACASLIATKVGEEPITASRRQLVAVKRKYDHRKYQHVSVSI-----QQPNVDDIKRAGNAG 420
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A6U6KAA6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KAA6_9STRA) HSP 1 Score: 263 bits (672), Expect = 5.920e-75 Identity = 139/269 (51.67%), Postives = 185/269 (68.77%), Query Frame = 3 Query: 555 LSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLA-RIPDTGLE---AAWSDGLAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVA 1349 ++ HD DR + A YV D+++ F + E K P +YM Q DIN KMRAIL+DW+VEVH+KF+L TLYL ++IDR+C +V RSKLQLVGVTALLIACKYEEIYP EVRDCVYITD AY R+EVL+MEQ IL+RL+F+I+VPT + FL+RFL + KA+ R A YY+ER LQEHD L F+PS++AA+++ LA PD + L ++ L CA ++ + +EPVTAS+R LVAVK+K+ ++ V+ Sbjct: 229 IAPHDTNDRGNTLQVAPYVTDIFQHFFQAEAKSCPEMYMDQQADINAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSHVSVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDILQRLRFKITVPTAYPFLLRFLNMTKASQLSRIAANYYMERTLQEHDLLKFKPSVVAASAVVLALNNPDISDDHDCPGMPTVLMEYTGFQPSELMACAAIIATKVGEEPVTASRRQLVAVKRKYDHRKYQHVS 497
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A6V2B684_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2B684_9STRA) HSP 1 Score: 261 bits (666), Expect = 7.630e-74 Identity = 136/274 (49.64%), Postives = 189/274 (68.98%), Query Frame = 3 Query: 555 LSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLA-RIPDTGLEAAWSDG--------LAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVA 1349 +++HD +D D+P ++YV D+++ E + P +YM Q DIN KMRAIL+DW+VEVH+KF+L TLYL +IIDR+C V RSKLQLVGVTALLIACKYEEIYP EVRDCVYITD AY ++EVL+MEQ +L RL+F+I+VPT + F++RFL + KA+ R+ A YY+ER LQEHD L RPS++ AAS+ LA PD + + S+ L ++ + + CA ++ + + +EPVTAS+R LVAVK+K+ ++ V+ Sbjct: 246 IAKHDEDDADEPLLVSDYVTDIFQHLFNAETRSRPRMYMDKQRDINAKMRAILVDWLVEVHMKFRLVPETLYLCVNIIDRYCNQVPVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYHKQEVLDMEQDMLHRLRFKITVPTAYPFILRFLNITKASSVARYAAHYYMERTLQEHDLLLHRPSLVCAASVVLALNNPDIIAKESTSNRERPGVPKILLEYTGFSKSDILECAAVIARKVGEEPVTASRRQLVAVKRKYDNRKYFHVS 519
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A7S1ZPT4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPT4_TRICV) HSP 1 Score: 255 bits (652), Expect = 1.620e-72 Identity = 137/271 (50.55%), Postives = 184/271 (67.90%), Query Frame = 3 Query: 555 LSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLAR----IP-DTG-LEAAWSDGLAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVA 1349 ++ HD D+++ YV D+++ E + P +YMH Q DIN KMRAIL+DW+VEVH+KF L TLYL +IIDR+C +V RSKLQLVGVTALLIACKYEEIYP EVRDCVYITD AY R+EVL+MEQ +L+RL+F+I+VPT + FL RFL + KA + A YY+ER LQEHD L ++PS++AA+ + LA IP DT L L ++ + L CA+++ + ++PVTAS+R LVAVK+K+ +F V+ Sbjct: 188 IAPHDACDKENVLKVVPYVTDIFQHLYRAEARSCPEIYMHNQADINAKMRAILVDWLVEVHMKFHLVPETLYLCINIIDRYCSQVSVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDMLQRLRFKITVPTAYPFLQRFLSLTKAPQLAQFAANYYMERTLQEHDLLQYKPSVVAASCVILALSNPDIPADTETLNPGMPRILLEYTGFEEKVLLSCAKLIATKVGEDPVTASKRQLVAVKRKYGHGKFRHVS 458
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A6U6K965_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6K965_9STRA) HSP 1 Score: 244 bits (624), Expect = 4.280e-71 Identity = 129/240 (53.75%), Postives = 169/240 (70.42%), Query Frame = 3 Query: 642 EEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLA-RIPDTGLE---AAWSDGLAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVA 1349 + K P +YM Q DIN KMRAIL+DW+VEVH+KF+L TLYL ++IDR+C +V RSKLQLVGVTALLIACKYEEIYP EVRDCVYITD AY R+EVL+MEQ IL+RL+F+I+VPT + FL+RFL + KA+ R A YY+ER LQEHD L F+PS++AA+++ LA PD + L ++ L CA ++ + +EPVTAS+R LVAVK+K+ ++ V+ Sbjct: 17 QAKSCPEMYMDQQADINAKMRAILVDWLVEVHMKFRLVPDTLYLCINLIDRYCSHVSVARSKLQLVGVTALLIACKYEEIYPPEVRDCVYITDRAYNRQEVLDMEQDILQRLRFKITVPTAYPFLLRFLNMTKASQLSRIAANYYMERTLQEHDLLKFKPSVVAASAVVLALNNPDISDDHDCPGMPTVLMEYTGFQPSELMACAAIIATKVGEEPVTASRRQLVAVKRKYDHRKYQHVS 256
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Match: A0A7S2PQG9_9STRA (G2/mitotic-specific cyclin-B3 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PQG9_9STRA) HSP 1 Score: 251 bits (642), Expect = 6.060e-71 Identity = 134/280 (47.86%), Postives = 186/280 (66.43%), Query Frame = 3 Query: 555 LSEHDVEDRDDPSACAEYVMDMYRRFKELEEKYTPTVYMHTQVDINCKMRAILIDWIVEVHLKFKLADPTLYLSCHIIDRFCMLENVHRSKLQLVGVTALLIACKYEEIYPTEVRDCVYITDHAYTREEVLEMEQTILRRLKFEISVPTQWTFLVRFLKVAKATDRQRHRAQYYLERCLQEHDGLSFRPSMLAAASIFLA------RIPDTGLEA---AWSDGLAKFCNIPREGLECCARMLIKYLHDEPVTASQRHLVAVKKKFLGERFLAVAID-DLP 1364 ++ +D R DP AEY+ D+++ + E +Y YM Q DIN +MRAILIDW+VEVH+KF+L TLYL IIDR+C +V RSKLQL+GVTALL+ACK+EEIYP EVRDCVYITD AY R+EVL+MEQ IL+ L ++ISVPT + FL RFL ++ A++ +H A YYLER LQEH L FRPS++ A+++ LA R+ + L+ + L ++ L C + + + +EP+TAS+R L AVKKK+ ++L V+ + +LP Sbjct: 205 IAHYDAARRSDPQKVAEYITDLFQHLYKAETRYKVAPYMFRQEDINARMRAILIDWLVEVHMKFRLVPETLYLCVSIIDRYCCKVDVLRSKLQLIGVTALLVACKHEEIYPPEVRDCVYITDRAYNRQEVLDMEQEILKVLDWKISVPTAFPFLDRFLCLSDASEMTKHAAAYYLERTLQEHSFLQFRPSVVCASAVILALNNPDIRVQEEDLDRELPGFPKILMEYTGFSEFELTTCMERMAEKVGEEPITASRRQLNAVKKKYENSKYLEVSTNVELP 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10145.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10145.127.1 >prot_H-elongata_contig10145.127.1 ID=prot_H-elongata_contig10145.127.1|Name=mRNA_H-elongata_contig10145.127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=438bp MAKPTRRSAAEAGIDVGAEANGVPHKMRLRRRAALGDISSAVGNNAAFQQback to top mRNA from alignment at H-elongata_contig10145:992..5165- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10145.127.1 ID=mRNA_H-elongata_contig10145.127.1|Name=mRNA_H-elongata_contig10145.127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4174bp|location=Sequence derived from alignment at H-elongata_contig10145:992..5165- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10145:992..5165- >mRNA_H-elongata_contig10145.127.1 ID=mRNA_H-elongata_contig10145.127.1|Name=mRNA_H-elongata_contig10145.127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2628bp|location=Sequence derived from alignment at H-elongata_contig10145:992..5165- (Himanthalia elongata Himel1 dioecious)back to top |