mRNA_H-elongata_contig10141.126.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig10141.126.1
Unique Name	mRNA_H-elongata_contig10141.126.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: D7FSH4_ECTSI (DUF1619 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH4_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.230e-44
Identity = 88/141 (62.41%), Postives = 101/141 (71.63%), Query Frame = 3

Query:  168 QNSLDAINPRFPLTGGGASQLAVDGLLCVQYDNSGSKGEFLEDPGTLPTSIFSDSAGQSEFTYHDVLAVSQGAGATEGDYFFDKGDRIPVAFSRDDGDALAAFGGFFPLAVAD------DTGQCNEANFVEFGVPVPALEG 572
            Q+ LD INP +PLTGGGA+Q AVDGLLCVQYDNS SKGEF EDPGTLP SIF DS G SEF+YHD LA S  +GATE D FFD GDRIP AF  DDG  +AAFGGFFP+ ++       DTGQ  E +F++    V   +G
Sbjct:   69 QDHLDKINPSYPLTGGGAAQGAVDGLLCVQYDNSASKGEFFEDPGTLPISIFGDS-GASEFSYHDNLAASAASGATETDSFFDTGDRIPAAFLADDGGTVAAFGGFFPVEISSVTWRDWDTGQ--ETDFMDVNCGVYYYDG 206

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: A0A835ZCT9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.670e-20
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 3

Query:  168 QNSLDAINPRFPLTGGGASQLAVDGLLCVQYDNSGSKGEFLEDPGTLPTSIFSDSAGQSEFTYHDVLAVSQGAGATEGDYFFDKGDRIPVAFSRDDGDA--LAAFGGFFPLAVADDTG 515
            +  L ++NP  PL+    +Q A+D LLCVQ DNS SKG+F EDPG L  +  S + G    +Y   +  + G G TEGD  +D+GDRIP AF    G A   AA+GG+FP    D  G
Sbjct:  150 KGQLVSVNPWGPLSAADTAQAALDNLLCVQKDNSPSKGQFYEDPGLLSAAAISTAEGTKFTSYGTAITAAAGRGPTEGDAIYDQGDRIPAAFVSAGGGAGLQAAYGGYFPAPGPDSAG 267

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: A0A7S1XKM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKM6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.210e-14
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1

Query:    4 FDCECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTCYS 162
            F+CEC CDL AG CD NCCCD EC+  ++ RF EL ACLPEGPA+ V T C S
Sbjct:   68 FECECTCDLNAGMCDYNCCCDTECSTEQIARFEELGACLPEGPADSVITECAS 120

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: A0A7S1TPI6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPI6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.320e-14
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1

Query:    4 FDCECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTCYS 162
            F+CEC CDL AG CD NCCCD EC+  ++ RF EL ACLPEGPA+ V T C S
Sbjct:   68 FECECTCDLNAGMCDYNCCCDTECSTEQIARFEELGACLPEGPADSVITECAS 120

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: A0A7S3K434_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K434_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.070e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1

Query:    1 IFDCECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTCYSQGKI 174
            +F+C C+CDLTAG CD NCCCD +CTQ E  RF  L+ CLPEGP ++  T CY+  ++
Sbjct:   70 MFECTCICDLTAGACDYNCCCDDDCTQDEKERFENLNDCLPEGPVDDEITKCYTTKQV 127

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: A0A8J2X759_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X759_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.660e-13
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1

Query:    1 IFDCECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTCYS 162
            +FDC C+CDLTAG+CD NCCCD EC + +  RF  + ACLPEG  N   T CYS
Sbjct:  110 VFDCTCICDLTAGECDHNCCCDKECDEAQRQRFDAIQACLPEGTQNGEITRCYS 163

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: F0YJJ7_AURAN (DUF1619 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJJ7_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 1.650e-12
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1

Query:    1 IFDCECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTCYSQGKI 174
            IF+C C+CDLTAG+CD NCCCD EC+ ++  RF  L+ CLPEG  +   T CYS  ++
Sbjct:   92 IFECTCICDLTAGRCDPNCCCDAECSDSQRNRFDVLETCLPEGGTDLQITKCYSTKEL 149

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: A0A812SIP0_9DINO (Tctn3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SIP0_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 7.860e-10
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1

Query:   13 ECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTCYSQGKIH 177
            +C+CDLT GQCDVNCCCD +CT   L       +CLPEGP N     CYS+  +H
Sbjct:   32 KCICDLTRGQCDVNCCCDPDCTS--LVGLTASFSCLPEGPVNASAQYCYSKSWLH 84

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: B8C570_THAPS (DUF1619 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C570_THAPS)

HSP 1 Score: 62.8 bits (151), Expect = 8.030e-8
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1

Query:    4 FDCECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTC 156
            FDC C CDLTAG CD+NCCCD EC   E+  FG   +CL EG  + ++  C
Sbjct:   62 FDCHCKCDLTAGVCDINCCCDPECHLAEIASFG---SCLDEGSVSPISKLC 109

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BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Match: A0A1Q9DPR5_SYMMI (Tectonic-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DPR5_SYMMI)

HSP 1 Score: 60.8 bits (146), Expect = 4.120e-7
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   16 CVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTTTCYSQGKIH 177
            C CDLT GQCDVNCCCD +C+   L+      +CLPEGP N     CYS+  +H
Sbjct:   47 CTCDLTEGQCDVNCCCDPDCSG--LSGLTGSFSCLPEGPVNANAQYCYSKSWLH 98

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot

BLAST of mRNA_H-elongata_contig10141.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7FSH4_ECTSI	3.230e-44	62.41	DUF1619 domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A835ZCT9_9STRA	4.670e-20	44.07	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1XKM6_9STRA	1.210e-14	64.15	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A7S1TPI6_9STRA	2.320e-14	64.15	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S3K434_9STRA	1.070e-13	55.17	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A8J2X759_9STRA	3.660e-13	59.26	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
F0YJJ7_AURAN	1.650e-12	53.45	DUF1619 domain-containing protein n=1 Tax=Aureococ...	[more]
A0A812SIP0_9DINO	7.860e-10	52.73	Tctn3 protein n=1 Tax=Symbiodinium natans TaxID=87...	[more]
B8C570_THAPS	8.030e-8	52.94	DUF1619 domain-containing protein n=1 Tax=Thalassi...	[more]
A0A1Q9DPR5_SYMMI	4.120e-7	51.85	Tectonic-1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A...	[more]

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Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig10141.126.1	prot_H-elongata_contig10141.126.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig10141 8420..8885 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929553.9402573-UTR-H-elongata_contig10141:6424..6622	1622929553.9402573-UTR-H-elongata_contig10141:6424..6622	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 6425..6622 -
1691679067.464902-UTR-H-elongata_contig10141:6424..6622	1691679067.464902-UTR-H-elongata_contig10141:6424..6622	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 6425..6622 -
1622929553.953712-UTR-H-elongata_contig10141:6764..6834	1622929553.953712-UTR-H-elongata_contig10141:6764..6834	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 6765..6834 -
1691679067.4750903-UTR-H-elongata_contig10141:6764..6834	1691679067.4750903-UTR-H-elongata_contig10141:6764..6834	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 6765..6834 -
1622929553.9667919-UTR-H-elongata_contig10141:7199..7327	1622929553.9667919-UTR-H-elongata_contig10141:7199..7327	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 7200..7327 -
1691679067.4826276-UTR-H-elongata_contig10141:7199..7327	1691679067.4826276-UTR-H-elongata_contig10141:7199..7327	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 7200..7327 -
1622929553.9838662-UTR-H-elongata_contig10141:8306..8419	1622929553.9838662-UTR-H-elongata_contig10141:8306..8419	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 8307..8419 -
1691679067.4905837-UTR-H-elongata_contig10141:8306..8419	1691679067.4905837-UTR-H-elongata_contig10141:8306..8419	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10141 8307..8419 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929554.0022867-CDS-H-elongata_contig10141:8419..8428	1622929554.0022867-CDS-H-elongata_contig10141:8419..8428	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10141 8420..8428 -
1691679067.5003824-CDS-H-elongata_contig10141:8419..8428	1691679067.5003824-CDS-H-elongata_contig10141:8419..8428	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10141 8420..8428 -
1622929554.0160966-CDS-H-elongata_contig10141:8714..8885	1622929554.0160966-CDS-H-elongata_contig10141:8714..8885	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10141 8715..8885 -
1691679067.5086968-CDS-H-elongata_contig10141:8714..8885	1691679067.5086968-CDS-H-elongata_contig10141:8714..8885	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10141 8715..8885 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig10141:6425..8885-
coding sequence from alignment at H-elongata_contig10141:6425..8885-

protein sequence of mRNA_H-elongata_contig10141.126.1

>prot_H-elongata_contig10141.126.1 ID=prot_H-elongata_contig10141.126.1|Name=mRNA_H-elongata_contig10141.126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
IFDCECVCDLTAGQCDVNCCCDVECTQTELTRFGELDACLPEGPANEVTT
TCYSQGKIH*

mRNA from alignment at H-elongata_contig10141:6425..8885-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig10141.126.1 ID=mRNA_H-elongata_contig10141.126.1|Name=mRNA_H-elongata_contig10141.126.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2461bp|location=Sequence derived from alignment at H-elongata_contig10141:6425..8885- (Himanthalia elongata Himel1 dioecious)
ATATTCGATTGCGAGTGTGTGTGTGACCTGACGGCGGGCCAGTGCGACGT
GAACTGCTGCTGCGATGTGGAGTGTACACAAACGGAGCTGACGCGTTTCG
GGGAACTGGATGCGTGCCTTCCAGAGGGGCCGGCGAATGAGGTCACCACC
ACGTGCTATTCACAAGGCAAAGTTCATATAGCCATTTGATTTTGTATCTA
GCTGTGCTGATGTTCTTGATAAGGTGGCATCGAGGCCGCCTTGAAACATC
AACAGTAATAATACTTGCCGTGTGCAGTAACATAAATAAGCTCAGAGTCG
AACATTTCCAAATAACCACCGAATCCCATTTCATGTCCCTCTTGAAATCT
TGTCCCTCCCGTCTCACTGCCAACTCTACTGTTCATATCGCACAAAGCAA
TGCAACATCACTATCTCAAATACCCTACACCGCCCCTTGTCGCTGTGACA
CGAACAGATTCATTAGATGCCATCAACCCGAGATTTCCGCTCACGGGTGG
TGGTGCCTCACAGTTAGCGGTCGACGGTCTCCTTTGCGTGCAGTACGACA
ACAGCGGGTCCAAGGGAGAGTTCTTGGAGGTAATTTTAAACGTTAGCTGC
AGCACTGCTGGCTTCTGCCATGCGTGGCATGGCTATTGACAGGAAAAACG
CGAGTAAAGTCTGAATATCACCTGTGCTTAAACTTCCAGTATTAAATAAT
AATTCCTGGTTGCCAAGTAATATTTTCTCTAGCTATACTACCAGTATTTT
CTCGCCTCGTACACAGCCAGTTAGAGCCCAAACGGCTACAATCCAAAGTC
AATCGAGATAGTGCATTATGGCACAACAACCATACGCAAACCTGACCAAT
CTATGCGTGTGTGTGTAGACTTCAAAATTAAACCCTTTATCTGAACAATG
AATGAGTACTTAGCTCACATCTTCTGCTCTTTTGCCTATGGCTAATTACC
TTTCAGTCCCTTCTAGTGATATAATAATATCTAGTACTTCAGCAGTATAT
AACTACCGCTTAAACCTCTTACTATCATCCTACCACACATACCAGTACTT
AAAATAATGCCACTAAACCCCCCTTCTTCTGACCCTAATAAGCATATATC
CTATATAAATAATCGTTACCGGGCCTTACCAATGCTACTATATATACTGT
ATCCCCTAAGTGGCATAATATTATCTATGCCTAATGATACAGAAATATAA
CCCCATTAAAAAACTTCTTCCTCTTCATGGCCCATTTTCTAAGCTCTGGT
CTGATTGCCCCCTACATGATTGACGTCATGAATAATATAAATGCTAAGAA
GGATAATGCAGGACTTCTCCCCGACATGATATCATCGGGGAACACGATTA
ATCACATGTTGTGACGATTTTGTGCTCAAAGGTAGTAATGTACATATTTG
AACCTGACGATAGTTGGCCCCCTGGACTGCACCTTTCGTAGTGGTACTAA
GAAGGTGTGGATGTTCGGAGGGTTGGAATGAGTTTATTATATGTTTAAAA
AGAAAAACAAGTAACTAAGTTTGTTTTTATGTTGACCGCCCGATGGGTTG
CACGTTAGGATCCTGGTACTTTGCCCACGTCGATATTCAGCGACAGCGCG
GGCCAGTCTGAGTTTACATATCATGACGTCCTGGCGGTATCGCAAGGGGC
GGGAGCGACAGAGGGTGACTACTTCTTCGACAAAGGGTGAGAGACGGTAT
ATTATCGTAGGGCTTTTTACAGCCCAGATATGCTCCTCTACACCATCTAC
CCCTTATTCCGCCATGGACCGCCCTCCTCAATCAAGCTACACGGGGCCGT
TCACCACCCCGCCAGCACCCGGCGATTCAGAAAGATTTATTTTTAGGGAG
GAAATTCGAGTTATTTTCAAGTAGTAGTGGTACTATGTTAACGGCGGACT
TAAGTTGCTCCTTCGAGGTTCGATGTCAATGACGAGGACTCAGTCTCTTG
TCAACAAGCGACGGCTCAGTGTTTTCACTATTTCGTCCTTCTCTTCCGCC
TGTCGTTTGATTCGGTCGCCGTGTGCCCCTTCGGATACTGGACCCGGCTA
GCGACAGAATACCGGTGGCGTTTTCAAGAGATGACGGGGATGCCCTAGCA
GCGTTTGGTGGTTTCTTCCCGGTGAGTAGTCGCATCCGCTGTTGCCATGC
TTATTACATTTACTGTAAGTACCAACACGAACAGCGTTTTTTTCACAGTT
CTCTAAGCTAAATATCTTGAATAGACATTGCGCTGCGTATGTGTGCGTCA
ACAACACCATTAGTTGGCAGTAGCTGACGATACGGGGCAATGCAACGAAG
CCAACTTCGTCGAATTCGGAGTCCCTGTTCCAGCACTCGAAGGCGGGGAA
AACATCTGCGCAAGAGAGGTTAAAAACCTCGAGAAGGAATGCTCGTCGGT
ATTTGGGTGGGAGCGATTTTCATCCAACCTGTACGCAGGAGCAAGCGGCA
CAACAGCTCCA

Coding sequence (CDS) from alignment at H-elongata_contig10141:6425..8885-

>mRNA_H-elongata_contig10141.126.1 ID=mRNA_H-elongata_contig10141.126.1|Name=mRNA_H-elongata_contig10141.126.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig10141:6425..8885- (Himanthalia elongata Himel1 dioecious)
ATATTCGATTGCGAGTGTGTGTGTGACCTGACGGCGGGCCAGTGCGACGT
GAACTGCTGCTGCGATGTGGAGTGTACACAAACGGAGCTGACGCGTTTCG
GGGAACTGGATGCGTGCCTTCCAGAGGGGCCGGCGAATGAGGTCACCACC
ACGTGCTATTCACAAGGCAAAATATTCGATTGCGAGTGTGTGTGTGACCT
GACGGCGGGCCAGTGCGACGTGAACTGCTGCTGCGATGTGGAGTGTACAC
AAACGGAGCTGACGCGTTTCGGGGAACTGGATGCGTGCCTTCCAGAGGGG
CCGGCGAATGAGGTCACCACCACGTGCTATTCACAAGGCAAAATTCATTA
GATTCATTAG