mRNA_H-elongata_contig101141.103.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 154 bits (389), Expect = 1.950e-41 Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 1 Query: 19 TIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVNGAQSKI 366
T E RAEL TLRG+ AGTLT +LSCEGVL WWK+W YPLLARAARVVFGAPAS+AVLERDF++A MM SSRS+ DAKY++M+LFLHGNLDLIPE I EL +DV Q+KI
Sbjct: 518 TFEPMARAELETLRGVEAGTLTDDLSCEGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKI 630
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 145 bits (366), Expect = 4.070e-38 Identity = 72/102 (70.59%), Postives = 84/102 (82.35%), Query Frame = 1 Query: 25 EESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAEL 330
E++ RAEL LR + G+L LSCE VL WWK W +YPLLAR ARVVFGAPAS+AVLERDFSNAG MMTSSRS+ D+KY++MI+FLHGNLDLIPEDI +L
Sbjct: 580 EQTARAELTNLRAVQGGSLAPGLSCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKL 681
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 145 bits (366), Expect = 4.690e-38 Identity = 76/113 (67.26%), Postives = 86/113 (76.11%), Query Frame = 1 Query: 28 ESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVNGAQSKI 366
E RAEL TLR + L + SCEGVL WWKR E SYPLLAR ARVVF APAS V ERD +AG MMTSSRS+ DAKY++M+LFLHGN+DL+PE I ELPAD VNG Q+KI
Sbjct: 623 ERARAELETLRSASDDALFGDTSCEGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKI 735
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.490e-37 Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1 Query: 88 ELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDI 321
ELSC+ VL WWKRW SSYPLLARAARVVFGAPAS+AVLE DF +AG +MTSSRS+TDAKY++MILFLHGNLDLIPEDI
Sbjct: 31 ELSCDSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 137 bits (346), Expect = 4.630e-36 Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1 Query: 25 EESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAEL 330
E++ RAEL LR + G+L A L CE VL WWK W +YPLLAR ARVV GA AS+AVLE DFSNAG MMTSSRS+ D+KY++MILFLHGNLDLIPEDI +L
Sbjct: 353 EQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL 454
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 130 bits (328), Expect = 2.580e-35 Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 1 Query: 16 KTIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAEL 330
++ +++ RAEL LR + G L A L CE VL WWK W +YPLLAR ARVVFGAPAS+AVLE FSNAG M TSSRS+ D+ Y++MI+FLHGNL+LIPEDI +L
Sbjct: 113 QSFKQTARAELTKLRAVQGGRLAARLRCEDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL 217
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE) HSP 1 Score: 107 bits (268), Expect = 3.980e-25 Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 19 TIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVN 348
T E AE TLRG+ AG+LT +L CEGVL WW++WE SYPLLARAARV FGAPA AG DAKY++M+LFLHG LDL PE I EL +D++
Sbjct: 317 TFEPMACAEFETLRGVEAGSLTDDLGCEGVLKWWEKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIH 405
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 100 bits (249), Expect = 4.140e-25 Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1 Query: 127 WESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAK-YMDMILFLHGNLDLIPEDIAEL 330
W YPLLAR ARVVFGAPAS+AVLERDFSNAG MMTSSR + D+ Y++MILFLHGNLDLIPEDI +L
Sbjct: 2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL 70
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 7.130e-23 Identity = 52/92 (56.52%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 88 ELSCEGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKYMDMILFLHGNLDLIPEDIAELPADDVNGAQSK 363
ELSCE VL WWKRW SSYPLLARA RVVFGAPAS+A Y++MILFLHGNLDLIP+DI LP D + A +K
Sbjct: 31 ELSCESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNK 99
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 8.930e-22 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1 Query: 136 SYPLLARAARVVFGAPASSAVLERDFSNAGYMMTSSRSSTDAKY-MDMILFLHGNLDLIPEDIAEL 330
+Y LL ARVVFGAPAS+A LERDFSNAG MMTSSRS+ D+KY ++MILFLHGNLDLIPEDI L
Sbjct: 5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL 70 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101141.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101141.103.1 >prot_H-elongata_contig101141.103.1 ID=prot_H-elongata_contig101141.103.1|Name=mRNA_H-elongata_contig101141.103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp TERSTKTIEESIRAELNTLRGLAAGTLTAELSCEGVLMWWKRWESSYPLLback to top mRNA from alignment at H-elongata_contig101141:1926..2291+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101141.103.1 ID=mRNA_H-elongata_contig101141.103.1|Name=mRNA_H-elongata_contig101141.103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig101141:1926..2291+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101141:1926..2291+ >mRNA_H-elongata_contig101141.103.1 ID=mRNA_H-elongata_contig101141.103.1|Name=mRNA_H-elongata_contig101141.103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig101141:1926..2291+ (Himanthalia elongata Himel1 dioecious)back to top |