mRNA_H-elongata_contig101109.101.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI) HSP 1 Score: 103 bits (256), Expect = 9.390e-25 Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 1 DGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 150 +G CCVCFRRRSRVVTFPCMHMATCPQCSESL+ CPLCRA+ISEKHTVFL Sbjct: 374 EGNCCVCFRRRSRVVTFPCMHMATCPQCSESLTVCPLCRANISEKHTVFL 423
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.330e-23 Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 1 DGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 150 +G CCVCFRRRSRVV FPCMHMATCPQCSESL+ CPLCRA+ISEKHTVFL Sbjct: 572 EGNCCVCFRRRSRVVMFPCMHMATCPQCSESLAVCPLCRANISEKHTVFL 621
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: UPI001F078695 (E3 ubiquitin-protein ligase XIAP n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F078695) HSP 1 Score: 50.8 bits (120), Expect = 5.690e-6 Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1 Query: 1 DGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVF 147 + +C VC R + +V PC H+ TC +CSESLS CP+C +I++K + Sbjct: 413 EKQCKVCMDRDTCIVFIPCGHLVTCKECSESLSKCPICCGTITQKIKTY 461
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: X6NBG7_RETFI (Apoptosis inhibitor IAP n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NBG7_RETFI) HSP 1 Score: 49.3 bits (116), Expect = 1.990e-5 Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 1 Query: 10 CCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEK-HTVF 147 C +C R ++ PC H+ATC QCS LS CPLC +++K H +F Sbjct: 290 CQLCRREEKSILFLPCAHVATCSQCSNPLSKCPLCNTLVNQKIHVLF 336
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: A0A8C9RBQ3_SCLFO (E3 ubiquitin-protein ligase XIAP-like n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RBQ3_SCLFO) HSP 1 Score: 49.3 bits (116), Expect = 1.990e-5 Identity = 20/50 (40.00%), Postives = 32/50 (64.00%), Query Frame = 1 Query: 1 DGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 150 + +C +C R +V PC H+ATC CS+SL+ CP+C A I++K ++ Sbjct: 343 EKQCKICMDRDIAIVFIPCGHLATCNDCSQSLTKCPICCAVITQKIKAYI 392
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: A0A1A7YLH5_9TELE (X-linked inhibitor of apoptosis n=2 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7YLH5_9TELE) HSP 1 Score: 48.9 bits (115), Expect = 2.730e-5 Identity = 20/50 (40.00%), Postives = 32/50 (64.00%), Query Frame = 1 Query: 1 DGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 150 + +C +C R +V PC H+ATC +CSE L+ CP+C +I++K +L Sbjct: 398 EKQCKICMDRDLCIVFLPCAHLATCRECSELLTKCPICCETITQKVKTYL 447
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: A0A1A8AA23_NOTFU (X-linked inhibitor of apoptosis n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8AA23_NOTFU) HSP 1 Score: 48.5 bits (114), Expect = 3.730e-5 Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 1 Query: 1 DGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 150 + +C +C R +V PC H+ATC +CSE L+ CP+C +I++K ++ Sbjct: 403 EKQCKICMDRDLCIVFLPCAHLATCKECSEVLTKCPICCEAITQKVKTYI 452
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: A7RYU6_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYU6_NEMVE) HSP 1 Score: 48.5 bits (114), Expect = 3.750e-5 Identity = 18/47 (38.30%), Postives = 31/47 (65.96%), Query Frame = 1 Query: 10 CCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFL 150 C +C RS VV PC H+ C C+ ++SACP+CR ++S++ +++ Sbjct: 698 CVICLDNRSDVVMLPCGHVCCCSNCAGAVSACPICRQTLSQRVRMYI 744
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Match: A0A7F5RLU3_AGRPL (E3 ubiquitin-protein ligase LRSAM1 isoform X1 n=3 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5RLU3_AGRPL) HSP 1 Score: 48.1 bits (113), Expect = 5.140e-5 Identity = 22/48 (45.83%), Postives = 26/48 (54.17%), Query Frame = 1 Query: 4 GRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVF 147 G C VC + + PC H C CS +SACPLCR SI KH V+ Sbjct: 639 GECIVCMEFKCETIFVPCGHYCCCTNCSNVISACPLCRTSI--KHKVY 684 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101109.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101109.101.1 >prot_H-elongata_contig101109.101.1 ID=prot_H-elongata_contig101109.101.1|Name=mRNA_H-elongata_contig101109.101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp DGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRASISEKHTVFLback to top mRNA from alignment at H-elongata_contig101109:253..876+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101109.101.1 ID=mRNA_H-elongata_contig101109.101.1|Name=mRNA_H-elongata_contig101109.101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig101109:253..876+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101109:253..876+ >mRNA_H-elongata_contig101109.101.1 ID=mRNA_H-elongata_contig101109.101.1|Name=mRNA_H-elongata_contig101109.101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig101109:253..876+ (Himanthalia elongata Himel1 dioecious)back to top |