mRNA_H-elongata_contig10099.93.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: D7FXL2_ECTSI (Sexually induced protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXL2_ECTSI) HSP 1 Score: 404 bits (1038), Expect = 3.070e-142 Identity = 178/204 (87.25%), Postives = 187/204 (91.67%), Query Frame = 1 Query: 19 LILAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 L AALV S+AYCPN+CSGHGSCGTNDQCTCYLRPNGD AW+GADCSLR CPKGAAWA EAVA N+AHPE+ECS KG CDR TGICTCFENYEGV CERT+CPNDCSGNGFC+TEKQLAADAG TY TPWDAEKQVGCKCDAGFRGPDCSLQECPSG DVMGGDG+ EGRDCSGRG+CDY TGLCGCFLGFYGTMCEYQTILS Sbjct: 9 LFFAALVGTSLAYCPNSCSGHGSCGTNDQCTCYLRPNGDVAWIGADCSLRTCPKGAAWAKEAVAANDAHPEVECSAKGTCDRATGICTCFENYEGVACERTICPNDCSGNGFCFTEKQLAADAGGTYNTPWDAEKQVGCKCDAGFRGPDCSLQECPSGADVMGGDGSIEGRDCSGRGICDYTTGLCGCFLGFYGTMCEYQTILS 212
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: A0A7S2BSV2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BSV2_9STRA) HSP 1 Score: 326 bits (836), Expect = 1.860e-111 Identity = 140/202 (69.31%), Postives = 159/202 (78.71%), Query Frame = 1 Query: 25 LAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 LA+ V AYCPN CSGHGSCG+ND+CTCYLRPNGDAAW DCSLR CPK AAW A A N AHP +ECS KG C+R TG C CF+NY+G+ CERTVCP DCS +GFCYTEKQLAADA TY PWDA K VGC CD G+RGPDCSLQECPSG DV+ GDG ++GRDCSGRG+C+Y GLC CF G++GT C++QTIL Sbjct: 11 LASFVAMGAAYCPNGCSGHGSCGSNDKCTCYLRPNGDAAWTSHDCSLRTCPKSAAWVAVATAANEAHPSVECSNKGSCNRKTGECDCFDNYDGIACERTVCPGDCSNHGFCYTEKQLAADASKTYTKPWDAMKHVGCVCDLGYRGPDCSLQECPSGVDVLKGDGNSKGRDCSGRGICNYGAGLCKCFTGYFGTKCQHQTILG 212
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: A0A7S2WLA1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLA1_9STRA) HSP 1 Score: 320 bits (820), Expect = 1.090e-108 Identity = 137/202 (67.82%), Postives = 155/202 (76.73%), Query Frame = 1 Query: 25 LAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 LA + AYCPN CSGHGSC ND+C CY RPNGD AW DCSLR CPK AAW A A N AHPE+ECS KG+C+R TG C CFENY+G+ CERTVCPNDCSG G CYT+KQLAA+A TY PWDA K VGC CD G+RGPDCSL+ECPSG DV+ GDG +GRDCSGRG+CDY TGLC CF G++GT C++QTIL Sbjct: 33 LAGFATLAAAYCPNGCSGHGSCSGNDKCVCYTRPNGDPAWTEHDCSLRTCPKAAAWVAVATAANEAHPEVECSNKGLCNRKTGECECFENYDGIACERTVCPNDCSGRGICYTQKQLAAEASMTYTEPWDAMKHVGCVCDLGYRGPDCSLEECPSGPDVLLGDGNEKGRDCSGRGICDYSTGLCKCFTGYFGTKCQHQTILG 234
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: Q9Y0F6_THAWE (Sexually induced protein 3 n=1 Tax=Thalassiosira weissflogii TaxID=1577725 RepID=Q9Y0F6_THAWE) HSP 1 Score: 315 bits (808), Expect = 4.350e-107 Identity = 135/201 (67.16%), Postives = 161/201 (80.10%), Query Frame = 1 Query: 19 LILAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAW-AMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQ 618 L+LA L+ AYCPNACSGHGSCG ND+CTCYLRPNGD AW G DCS+R CPKG AW A EAV++++ HP +ECS KG+CDR TG C CFENY+G CERT+CPNDCSG G C +K LAA G+TY TPWDAEK +GCKCDAG+RGPDCS +ECPSGDD++G +G +EGRDCSGRG C+Y+TGLC CF G++G C + Sbjct: 6 LVLATLLATVRAYCPNACSGHGSCGINDKCTCYLRPNGDPAWTGHDCSMRTCPKGNAWVAEEAVSLDDVHPRMECSNKGMCDRETGECVCFENYDGKACERTICPNDCSGRGICLPQKSLAALEGATYDTPWDAEKHLGCKCDAGYRGPDCSQKECPSGDDILGREGGSEGRDCSGRGKCNYVTGLCQCFTGYFGNRCHIR 206
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: B8CC41_THAPS (Sig3-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC41_THAPS) HSP 1 Score: 305 bits (782), Expect = 3.000e-103 Identity = 130/211 (61.61%), Postives = 162/211 (76.78%), Query Frame = 1 Query: 1 MLRLSTLILAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAV-AVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 M++ ++LA LV + A+CPN C G+GSCG ND+CTCYLRPNGD AW DCS R CP G+AW+ E N+AHP ECS KG CDR +G C CFENY+G CERT+CPNDCSG G C T+K LA G+TY TPWDAEK +GCKCD G+RGPDCS +ECPSG+D++GGDGA +GR+CSGRG C+++TGLC CF G++G C++QT+LS Sbjct: 1 MVKALLVVLATLVATAGAHCPNGCKGNGSCGINDKCTCYLRPNGDPAWTAHDCSERTCPYGSAWSSETTNGANDAHPHAECSNKGTCDRNSGECVCFENYDGKACERTLCPNDCSGRGICLTQKALAIFQGATYETPWDAEKHLGCKCDVGYRGPDCSRKECPSGEDILGGDGAVKGRECSGRGNCNFITGLCQCFDGYFGNKCQHQTVLS 211
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: A0A812W0K4_SYMMI (Tnc protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W0K4_SYMMI) HSP 1 Score: 304 bits (778), Expect = 1.140e-102 Identity = 134/195 (68.72%), Postives = 148/195 (75.90%), Query Frame = 1 Query: 46 SMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 ++AYCPN CSGHGSCGTND+CTCY R +G+AAW DCS R CPK AAW + NNAHP +ECS KGICDR TG C CFENYEG+ CERTVCPN CS G C+TEKQLAA+A Y +PWDAEK VGC CD G RGPDCSL ECPSG DV+ G G GRDCSGRG+CDY G C CF G+YGT CEYQTIL Sbjct: 15 AVAYCPNGCSGHGSCGTNDKCTCYARIDGEAAWTFPDCSGRTCPKSAAWIGDVAGANNAHPVVECSNKGICDRETGECQCFENYEGIACERTVCPNSCSDAGVCFTEKQLAAEASRDYDSPWDAEKHVGCICDLGRRGPDCSLVECPSGADVLKGYGNEAGRDCSGRGLCDYTDGTCSCFHGYYGTKCEYQTILG 209
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: F0Y4Z3_AURAN (EGF-like domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4Z3_AURAN) HSP 1 Score: 302 bits (774), Expect = 9.520e-102 Identity = 132/198 (66.67%), Postives = 149/198 (75.25%), Query Frame = 1 Query: 40 CRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVA-VNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 C AYCPN CSGHGSCG++D+CTCYLRPN D+AW ADCS R CP AW VA NN H ECS GICDR +G C CF+ YEG+ CERT CPNDCS G CYT+KQLA +A +TY TPWDA K VGC CD GFRGPDCSLQECPSG DV+ GDG T+GRDCSGRG+CDY +GLC CF G+YGT C+ QT+L Sbjct: 33 CLVAAYCPNGCSGHGSCGSDDRCTCYLRPNNDSAWQAADCSERTCPMDLAWVKYPVAGENNVHESTECSNMGICDRKSGECECFDGYEGIACERTSCPNDCSARGICYTQKQLATEAATTYDTPWDAMKHVGCVCDLGFRGPDCSLQECPSGTDVLSGDGNTKGRDCSGRGLCDYDSGLCKCFSGYYGTKCQQQTVLG 230
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: C4B7Q8_OCHDN (Tubular mastigoneme protein n=1 Tax=Ochromonas danica TaxID=2986 RepID=C4B7Q8_OCHDN) HSP 1 Score: 298 bits (762), Expect = 3.100e-100 Identity = 128/204 (62.75%), Postives = 153/204 (75.00%), Query Frame = 1 Query: 19 LILAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 L+LA L+ + A CPN C+GHGSCG ND+CTCY R +G+ AW ADCS R CPK +AW + N+AHP +ECS KG+CDR TG C CF NY+G+ CER +CPN CS G C+T+KQLA DA TY TPWDAEK+VGC CD G RGPDCSL ECPSG DV+ G G+ GRDCSGRG+CDY +G+C CF G+YGT CEYQT+L Sbjct: 6 LLLAFLLAVAQAACPNGCNGHGSCGANDKCTCYTRIDGEPAWTYADCSGRTCPKSSAWVGDVQNANDAHPVVECSNKGVCDRKTGECKCFANYDGIACERPICPNKCSDAGVCFTQKQLAVDAARTYATPWDAEKEVGCVCDLGRRGPDCSLFECPSGPDVLKGFGSEAGRDCSGRGLCDYSSGICNCFHGYYGTKCEYQTVLG 209
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: A0A7S0SS37_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SS37_9STRA) HSP 1 Score: 293 bits (749), Expect = 3.270e-98 Identity = 127/205 (61.95%), Postives = 150/205 (73.17%), Query Frame = 1 Query: 16 TLILAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAGSTYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 +++L L+ CPN CSGHGSCG+ND+CTCY R +GD AW ADCS R CPK AW E N+AHP ECS KG CDR TG C C+ NY+G+ C+RT+CPN CS +G C+TE QLA++AG TY TPWDA K VGC CD G RGPDCSL ECPSG DV+GG G GRDCSGRG+CDY +G+CGCF G+YG CEYQT+L Sbjct: 8 SILLLLLITYIYCNCPNGCSGHGSCGSNDKCTCYTRIDGDPAWTYADCSGRTCPKAIAWVGEVSNTNDAHPLTECSNKGTCDRKTGQCICYPNYDGIACDRTICPNRCSESGVCFTEYQLASEAGRTYSTPWDANKYVGCVCDLGRRGPDCSLLECPSGADVLGGYGNETGRDCSGRGICDYSSGICGCFHGYYGHRCEYQTVLG 212
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Match: A0A7S2NU76_9STRA (Hypothetical protein n=2 Tax=Coscinodiscophyceae TaxID=33836 RepID=A0A7S2NU76_9STRA) HSP 1 Score: 287 bits (735), Expect = 2.250e-95 Identity = 123/204 (60.29%), Postives = 149/204 (73.04%), Query Frame = 1 Query: 22 ILAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGADCSLRACPKGAAWAMEAVAVNNAHPEIECSGKGICDRLTGICTCFENYEGVGCERTVCPNDCSGNGFCYTEKQLAADAG-STYMTPWDAEKQVGCKCDAGFRGPDCSLQECPSGDDVMGGDGATEGRDCSGRGVCDYLTGLCGCFLGFYGTMCEYQTILS 630 +LA AYCPN CSGHGSCG ND+CTCYL PN + AW DCS R CP G AW E V+ ++AHP +ECS KG CDR TG C CF NY G CERT+CPN+C G+G C TE LA D G ++Y+ PWD++K VGCKCD G+RG DC+ +ECPSG DV+GG GATEGR+CSGRG+C+Y GLC CF G+YG C++QT+L Sbjct: 57 VLATFASNCQAYCPNGCSGHGSCGVNDKCTCYLDPNNNPAWTEHDCSKRTCPLGTAWVGEPVSEDDAHPLVECSNKGTCDRATGDCKCFPNYGGKACERTLCPNNCGGHGICMTESALAHDHGEASYVLPWDSQKHVGCKCDVGYRGVDCTEKECPSGPDVLGGQGATEGRECSGRGLCNYGDGLCKCFTGYYGNRCQHQTVLG 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10099.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10099.93.1 >prot_H-elongata_contig10099.93.1 ID=prot_H-elongata_contig10099.93.1|Name=mRNA_H-elongata_contig10099.93.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp MLRLSTLILAALVCRSMAYCPNACSGHGSCGTNDQCTCYLRPNGDAAWVGback to top mRNA from alignment at H-elongata_contig10099:6363..8226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10099.93.1 ID=mRNA_H-elongata_contig10099.93.1|Name=mRNA_H-elongata_contig10099.93.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1864bp|location=Sequence derived from alignment at H-elongata_contig10099:6363..8226- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10099:6363..8226- >mRNA_H-elongata_contig10099.93.1 ID=mRNA_H-elongata_contig10099.93.1|Name=mRNA_H-elongata_contig10099.93.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig10099:6363..8226- (Himanthalia elongata Himel1 dioecious)back to top |