mRNA_H-elongata_contig100987.92.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: A0A6H5JRL4_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRL4_9PHAE) HSP 1 Score: 260 bits (664), Expect = 9.410e-83 Identity = 132/148 (89.19%), Postives = 141/148 (95.27%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R+AQSAQVRLT+GDG Q TF+A VKGYDPDKDVAVLKIDAP E LRPI +G SN+LKVGQLALAIGNPFGLDHTLTMG+VSGLGREVKSPSGRPI+NVIQTDAAINPGNSGGPLLDSVGRIIGMNTAI+SPSGGSAGIGFAIPIDTL+ Sbjct: 206 REAQSAQVRLTLGDGTQKTFQAQVKGYDPDKDVAVLKIDAPSELLRPIGLGASNALKVGQLALAIGNPFGLDHTLTMGVVSGLGREVKSPSGRPISNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIYSPSGGSAGIGFAIPIDTLK 353
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: K8YVK1_NANGC (PDZ domain-containing protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVK1_NANGC) HSP 1 Score: 234 bits (597), Expect = 5.070e-73 Identity = 113/148 (76.35%), Postives = 135/148 (91.22%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R A+SAQV LT DG Q+T+KA ++G+DPDKDVAVL+++APP +LRPI +G S++LKVGQ ALAIGNPFGLDHTLT G++SGLGREV+SPSGRPI+NVIQTDAAINPGNSGGPLLDS GR++GMNTAI+SPSG SAGIGFAIP+DTL+ Sbjct: 171 RSAESAQVTLTDRDGHQSTYKALLRGFDPDKDVAVLRVEAPPASLRPIPVGSSSTLKVGQAALAIGNPFGLDHTLTSGVISGLGREVRSPSGRPISNVIQTDAAINPGNSGGPLLDSAGRLVGMNTAIYSPSGASAGIGFAIPVDTLK 318
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: W7TLQ5_9STRA (Serine-type peptidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLQ5_9STRA) HSP 1 Score: 234 bits (597), Expect = 1.880e-72 Identity = 113/148 (76.35%), Postives = 135/148 (91.22%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R A+SAQV LT DG Q+T+KA ++G+DPDKDVAVL+++APP +LRPI +G S++LKVGQ ALAIGNPFGLDHTLT G++SGLGREV+SPSGRPI+NVIQTDAAINPGNSGGPLLDS GR++GMNTAI+SPSG SAGIGFAIP+DTL+ Sbjct: 292 RSAESAQVTLTDRDGHQSTYKALLRGFDPDKDVAVLRVEAPPASLRPIPVGSSSTLKVGQAALAIGNPFGLDHTLTSGVISGLGREVRSPSGRPISNVIQTDAAINPGNSGGPLLDSAGRLVGMNTAIYSPSGASAGIGFAIPVDTLK 439
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: A0A836C9K9_9STRA (Serine type protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K9_9STRA) HSP 1 Score: 223 bits (569), Expect = 7.120e-70 Identity = 113/149 (75.84%), Postives = 131/149 (87.92%), Query Frame = 1 Query: 16 RQAQSAQVRLT-MGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R A +AQVR+T G+Q ++ A V+GYDPDKDVAVLKIDAPPE L+PI +G S LKVGQLALAIGNPFGLDHTLT G++SGLGREV+SPSGRPI+NV+QTDAAINPGNSGGPLL+S G+I GMNTAI+SPSG SAGIGFAIPIDT++ Sbjct: 67 RSANTAQVRITDPSTGKQASYAARVQGYDPDKDVAVLKIDAPPEQLQPIPLGSSAVLKVGQLALAIGNPFGLDHTLTTGVISGLGREVRSPSGRPISNVVQTDAAINPGNSGGPLLNSAGQITGMNTAIYSPSGASAGIGFAIPIDTIK 215
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: L1JKS3_GUITC (PDZ domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKS3_GUITC) HSP 1 Score: 214 bits (546), Expect = 5.890e-66 Identity = 106/148 (71.62%), Postives = 127/148 (85.81%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R A SAQV L+ G+QT +KA + G DPDKD+AVLKI+APP ALRPI +G S L VGQ ALAIGNPFGLDH+LT+G+VSGLGRE KSP+GRPI+NVIQTDAAINPGNSGG LL+S G++IGMNTAIFSPSG ++G+GFAIP+DT++ Sbjct: 124 RSANSAQVALSDAKGKQTLYKATLTGVDPDKDIAVLKIEAPPAALRPIDVGTSADLLVGQTALAIGNPFGLDHSLTIGVVSGLGRETKSPTGRPISNVIQTDAAINPGNSGGALLNSQGKLIGMNTAIFSPSGANSGVGFAIPVDTIK 271
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: A0A7S0EJU7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EJU7_9CRYP) HSP 1 Score: 214 bits (544), Expect = 1.660e-65 Identity = 104/148 (70.27%), Postives = 128/148 (86.49%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R A SAQV L+ G+QT +KA + G DPD D+AVLKI+APP ALRPI +G S+ L+VGQ ALAIGNPFGLDH+LT+G+VSGLGRE KSP+GRPI+NVIQTDAAINPGNSGG LL+S G++IGMNTAI+SPSG ++G+GFAIP+DT++ Sbjct: 145 RSANSAQVALSDAKGKQTMYKATLTGIDPDNDIAVLKIEAPPAALRPIEVGTSSDLQVGQTALAIGNPFGLDHSLTIGVVSGLGRETKSPTGRPISNVIQTDAAINPGNSGGALLNSQGKLIGMNTAIYSPSGANSGVGFAIPVDTIK 292
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: A0A0M0J473_9EUKA (Protease n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J473_9EUKA) HSP 1 Score: 212 bits (540), Expect = 4.570e-65 Identity = 111/148 (75.00%), Postives = 126/148 (85.14%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R A++A+V LT +G Q F A + GY+PDKDVAVLKIDA PIS+G S+SL+VGQ LAIGNPFGLDHTLTMG+VSGLGREV+SPSGRPITNVIQTDAAINPGNSGG LLDS GR+IGMNTAI+SPSG SAGIGFAIP+DTL+ Sbjct: 123 RSAEAAKVVLTDENGLQKRFDARLVGYNPDKDVAVLKIDAGLSRPPPISLGSSSSLRVGQTTLAIGNPFGLDHTLTMGVVSGLGREVQSPSGRPITNVIQTDAAINPGNSGGALLDSSGRLIGMNTAIYSPSGASAGIGFAIPVDTLK 270
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: A0A1Z5JF73_FISSO (PDZ domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF73_FISSO) HSP 1 Score: 208 bits (529), Expect = 3.800e-63 Identity = 103/136 (75.74%), Postives = 119/136 (87.50%), Query Frame = 1 Query: 52 GDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 G+ ++ FKA V G DP KD+AVLK+DAPPE L+PI++G S LKVGQ ALAIGNPFGLDHTLT GIVSGLGREV+SP GRPI+NVIQTDAAINPGNSGGPLLDS G++IGMNTAI+SPSG S+GIGFAIP DT++ Sbjct: 177 GNIARSVFKAKVVGVDPSKDIAVLKVDAPPELLQPIAVGTSKGLKVGQTALAIGNPFGLDHTLTTGIVSGLGREVRSPIGRPISNVIQTDAAINPGNSGGPLLDSSGKLIGMNTAIYSPSGASSGIGFAIPSDTIK 312
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: A0A7S2D2Z2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2Z2_9STRA) HSP 1 Score: 208 bits (530), Expect = 1.990e-62 Identity = 106/153 (69.28%), Postives = 125/153 (81.70%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKID-----APPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 R ++SAQV +T +G Q+T+ A ++G+D DKD+AVLKI A P+ IG S LKVGQ ALAIGNPFGLDHTLT+G++SGLGREV+SPSGRPITNVIQTDAAINPGNSGGPLLDS GR++GMNTAIFSPSG S GIGFAIP+DTL+ Sbjct: 163 RNSESAQVTVTDSNGDQSTYNATLRGFDADKDIAVLKITNISATAKSTPFVPVKIGTSTGLKVGQSALAIGNPFGLDHTLTVGVISGLGREVRSPSGRPITNVIQTDAAINPGNSGGPLLDSSGRLVGMNTAIFSPSGASVGIGFAIPVDTLK 315
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Match: M1VCA0_CYAM1 (DegP protease n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VCA0_CYAM1) HSP 1 Score: 206 bits (525), Expect = 5.770e-62 Identity = 105/148 (70.95%), Postives = 126/148 (85.14%), Query Frame = 1 Query: 16 RQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALRPISIGESNSLKVGQLALAIGNPFGLDHTLTMGIVSGLGREVKSPSGRPITNVIQTDAAINPGNSGGPLLDSVGRIIGMNTAIFSPSGGSAGIGFAIPIDTLR 459 RQA++A R+TM DG+ T+ A + GYD DKDVAVLKIDAP E LRP+++G S L VGQ A AIGNPFGL+ T+T GI+SGLGRE++SP+GRPITNV+QTD+AINPGNSGGPLLDS GR+IGM TAI+SPSG SAG+GFAIPIDTL+ Sbjct: 211 RQAEAA--RVTMADGK--TYPARLVGYDADKDVAVLKIDAPTETLRPVTLGSSAGLHVGQRAYAIGNPFGLNETMTQGIISGLGREIRSPTGRPITNVLQTDSAINPGNSGGPLLDSQGRVIGMTTAIYSPSGASAGVGFAIPIDTLK 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100987.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100987.92.1 >prot_H-elongata_contig100987.92.1 ID=prot_H-elongata_contig100987.92.1|Name=mRNA_H-elongata_contig100987.92.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp MFVDRRQAQSAQVRLTMGDGQQTTFKAAVKGYDPDKDVAVLKIDAPPEALback to top mRNA from alignment at H-elongata_contig100987:239..1253- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100987.92.1 ID=mRNA_H-elongata_contig100987.92.1|Name=mRNA_H-elongata_contig100987.92.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1015bp|location=Sequence derived from alignment at H-elongata_contig100987:239..1253- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100987:239..1253- >mRNA_H-elongata_contig100987.92.1 ID=mRNA_H-elongata_contig100987.92.1|Name=mRNA_H-elongata_contig100987.92.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig100987:239..1253- (Himanthalia elongata Himel1 dioecious)back to top |