Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Model size | 159 |
| Cds size | 126 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929550.9328167-UTR-H-elongata_contig100969:13..19 | 1622929550.9328167-UTR-H-elongata_contig100969:13..19 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100969 14..19 + |
| 1691679065.7758973-UTR-H-elongata_contig100969:13..19 | 1691679065.7758973-UTR-H-elongata_contig100969:13..19 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100969 14..19 + |
| 1622929550.9783971-UTR-H-elongata_contig100969:158..185 | 1622929550.9783971-UTR-H-elongata_contig100969:158..185 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100969 159..185 + |
| 1691679065.814292-UTR-H-elongata_contig100969:158..185 | 1691679065.814292-UTR-H-elongata_contig100969:158..185 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100969 159..185 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929550.9469712-CDS-H-elongata_contig100969:19..83 | 1622929550.9469712-CDS-H-elongata_contig100969:19..83 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100969 20..83 + |
| 1691679065.7852106-CDS-H-elongata_contig100969:19..83 | 1691679065.7852106-CDS-H-elongata_contig100969:19..83 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100969 20..83 + |
| 1622929550.9665248-CDS-H-elongata_contig100969:96..158 | 1622929550.9665248-CDS-H-elongata_contig100969:96..158 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100969 97..158 + |
| 1691679065.801849-CDS-H-elongata_contig100969:96..158 | 1691679065.801849-CDS-H-elongata_contig100969:96..158 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100969 97..158 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100969.90.1 >prot_H-elongata_contig100969.90.1 ID=prot_H-elongata_contig100969.90.1|Name=mRNA_H-elongata_contig100969.90.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MVVDGRDGRRRGKREDREDPGISTRFSLGWENEQADAGRDC* back to topmRNA from alignment at H-elongata_contig100969:14..185+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig100969.90.1 ID=mRNA_H-elongata_contig100969.90.1|Name=mRNA_H-elongata_contig100969.90.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=172bp|location=Sequence derived from alignment at H-elongata_contig100969:14..185+ (Himanthalia elongata Himel1 dioecious)
GACCCGATGGTGGTTGACGGTAGAGATGGACGCCGTCGCGGAAAACGGGA
GGATCGAGAGGATCCCGGGAGTATGCCCGGGAGTAAGCACGAGATTCAGC
CTGGGTTGGGAGAATGAGCAGGCTGACGCGGGACGGGACTGCTGAACCCG
TGTCGCGAGACCAAATTCTCAG back to topCoding sequence (CDS) from alignment at H-elongata_contig100969:14..185+ >mRNA_H-elongata_contig100969.90.1 ID=mRNA_H-elongata_contig100969.90.1|Name=mRNA_H-elongata_contig100969.90.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig100969:14..185+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGTTGACGGTAGAGATGGACGCCGTCGCGGAAAACGGGAGGATCG
AGAGGATCCCGGGAATGGTGGTTGACGGTAGAGATGGACGCCGTCGCGGA
AAACGGGAGGATCGAGAGGATCCCGGGATAAGCACGAGATTCAGCCTGGG
TTGGGAGAATGAGCAGGCTGACGCGGGACGGGACTGCTGATAAGCACGAG
ATTCAGCCTGGGTTGGGAGAATGAGCAGGCTGACGCGGGACGGGACTGCT
GA back to top
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