mRNA_H-elongata_contig100896.80.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.800e-18 Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
PGP HWRAA++AL+YL TR G+ GG LSA++DADY CPDTRR VSG ++ G ISW ++ + + +++E+E+V L+ + E ++
Sbjct: 663 PGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVALSLCIQECLYI 761
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: V5GIW0_ANOGL (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GIW0_ANOGL) HSP 1 Score: 81.6 bits (200), Expect = 4.600e-18 Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1 Query: 4 GPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
G HW AA+ L+YL T +LG+T+ L A++DAD+G CP+ R+S +G M+ GG ISW +R +K A +S+E+EY+ L+E V E +L
Sbjct: 5 GKEHWTAAKCVLRYLKGTINLGLTF--TKNSESLKAFVDADWGNCPNDRKSYTGYVFMLGGGPISWDARKQKTVALSSTEAEYMALSEAVKEAEYL 98
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.550e-17 Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
P P HWRAA++AL+YL TR G+ GG LSA++DADY CPDTRR VSG ++ G ISW ++ + + +++E+E+V L+ + E ++
Sbjct: 1807 PDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYI 1905
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0X457_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X457_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.580e-17 Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
PGP HWRAA++ L+Y+ TR G+ GG K LSA++DADY C DTRR VSG +++ G ISW ++ + + +++E+E+V LA + E ++
Sbjct: 600 PGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLFGSPISWLAKKQNIVTLSTTEAEFVALALCIQECLYI 698
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: W2WEK3_PHYPR (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WEK3_PHYPR) HSP 1 Score: 84.7 bits (208), Expect = 4.670e-17 Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNE 279
PG HW+AA + L+YL TR+LGI Y G + G KL+A+ DAD+G+ PD RRSVSG V ++G + + S+ ++ A +S+E+EY+ L E
Sbjct: 1034 PGQQHWKAAIRVLRYLKGTRELGIVYSGTSSGVKLTAYTDADWGSNPDDRRSVSGTMVTISGAPVIFKSKYQRTVALSSAEAEYMALGLCTQE 1126
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0X4C5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4C5_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.730e-17 Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
PGP HWRAA++ L+Y+ TR G+ GG K LSA++DADY C DTRR VSG +++ G ISW ++ + + +++E+E+V LA + E ++
Sbjct: 1595 PGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLFGSPISWLAKKQNIVTLSTTEAEFVALALCIQECLYI 1693
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A8H7M0F2_9AGAM (Gag-polypeptide of LTR copia-type n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7M0F2_9AGAM) HSP 1 Score: 81.6 bits (200), Expect = 7.880e-17 Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
PG HW +++LQYL T+D+GI Y ++ G L ++DA+Y P+T RS +G A MMAGG ++W SR + + S+E+EYV A EL +L
Sbjct: 52 PGQDHWNGFKRSLQYLQGTKDIGIVYR-QSAGSTLIGYVDANYAGDPNTSRSTTGWAFMMAGGCVAWSSRKQPTISLLSTEAEYVAAASATRELIWL 147
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A328KN85_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KN85_9BACI) HSP 1 Score: 79.3 bits (194), Expect = 9.270e-17 Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGG-ETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
PG HW AAQ+ L+YL T GITY E G L + D+D+ PDTRRS SG A M+AGG +SW S+++ + +S E+EY+ L E +L
Sbjct: 35 PGRPHWVAAQRVLRYLAGTSSFGITYHRQEQGSSDLFGYSDSDWAGDPDTRRSTSGFAFMLAGGPVSWKSKLQSSVSLSSVEAEYIALCSAAREAYWL 132
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0W2A7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W2A7_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.140e-16 Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
PGP HWRAA++ L+Y+ TR G+ GG K LSA++DADY C DTRR VSG +++ G ISW ++ + + +++E+E+V L + E ++
Sbjct: 398 PGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLLGSPISWLAKKQNIVTLSTTEAEFVALVLCIQECLYI 496
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6A4YVS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YVS9_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.360e-16 Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK---LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
PGPTHW A Q+AL+YL TR GI GG LSA++DA+Y C DTRR +SG + G +SW ++ + + +++E+E+V LA + EL +L
Sbjct: 38 PGPTHWSAVQRALRYLKGTRTYGIRLGGIASIDDFPFLSAYVDANYAMCVDTRRCISGFFTLFFGSPVSWLAKKQPLVTLSTTEAEFVALALCIQELLYL 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100896.80.1 >prot_H-elongata_contig100896.80.1 ID=prot_H-elongata_contig100896.80.1|Name=mRNA_H-elongata_contig100896.80.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTRback to top mRNA from alignment at H-elongata_contig100896:1527..1820+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100896.80.1 ID=mRNA_H-elongata_contig100896.80.1|Name=mRNA_H-elongata_contig100896.80.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig100896:1527..1820+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100896:1527..1820+ >mRNA_H-elongata_contig100896.80.1 ID=mRNA_H-elongata_contig100896.80.1|Name=mRNA_H-elongata_contig100896.80.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig100896:1527..1820+ (Himanthalia elongata Himel1 dioecious)back to top |