mRNA_H-elongata_contig10085.77.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: D7FVS8_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS8_ECTSI) HSP 1 Score: 540 bits (1391), Expect = 1.640e-173 Identity = 357/795 (44.91%), Postives = 451/795 (56.73%), Query Frame = 1 Query: 919 RQGWDAKAFLLGVFDDFDRSGEGKISLRQFREALHDLNVRVSEDTLLEVGRYFQVATLRHRDDRRGNGDGHDSPHRSRRCGVSNI--SDSIDGLDMEVSYIALVDVVFS-KRVNSPPGCGLPIQQNGNNTDDPSTIEET-----PRSTMRCITTVDGARSSDDSEEEKDRVKSSGTHLDVRKIRDARAAALNVPDSLGRRPLFLAVAAGAVSVAKTLVRFGATSNLGVKGTGLTAYDVAPSSLIRRVLIGEARRSLDEILVLKERRRRHGVAARGLELSLTADDQLNAEKREKGHEAKAGEGRMRTLKGKADAEDVTCDDRLNRQMEVWVSTLADGELATENAIGHLGMDHKTSLHLAASAGLPGMIAKLLERGLGVVTKTNSRRRQERRGWASSTK-SPGVLLETMFNTAPC-----------PRSSFAKADANGWSPLHVCCSETLSYAHFHCAVTLLGSECDPNSRTNDGKTPLHMAACAGDDDNEGRGGNDLIYLLVSHGGDLEAQDGDGLRPLHYAAKTGRHTTLISLLTAGATPCSVTPRGWNALHYSVAFGHPEAARLLSWWDSDSGVLGSQKNGDGVTPVDLGRSEQVRSATRTIWEAAARGDTKWVSRACLEGSRFSKTKSVRPWGHPGVNDKTPGLRFTPLHACMAGLAAKIKQLDISVPCTPPTPQDKGNGKGFAGPLGLSLYERLVRKEGRAVKSVIVTDRRCKKPSSQSTGARSLSSAAARGEEHFANCVRGC------NSDHLMVCRTLLSVGADVEALDARCRTPLALASATGSLEAVEV 3225
R+ A+AFLL VF+DFDR+G+G +S+RQFRE L D+NVRVSE TLLEVGRYF+ TL+ R R H R + G + S D +EVSY+ L+D+VF K V G Q+ TDDPS E PR + + + S DD D +D+ +IR AR A L D+L R PLFLA AAG V AKTL+R GA S V GTGLT + V+PS L+RRVL EAR+SL + L + R G + + +L E+ + G E LK ++ E + DD NR+M +W+STLA+ ELA A +D KTSLHLAA+AGLP + LL RG+G K Q W +S+K S ++ +T C P ++ DANGWS LH CC+E S H+ CA+ LLGS DPN+RTN GKTPLH+AA A G +D+I +LVSHG LEAQD DGLRP+H+AA+ GRH L++LLTAGA P SVT R WNALHYS A G RLL +WDSDSGVL Q+N G T +DLGR++ +R A +IWEAAA G+T+ VSR+C EGSR K +PW PGVN KTPGL FTPLHACMAGLAA + D+S+PC PP K + K P SLY L R RC KP+ + G ++S R + +RG D+ CR LLS ADV ALD RCRTPLALA+A+G++E VE+
Sbjct: 2 RKRGGAEAFLLSVFEDFDRNGDGTLSMRQFRECLFDVNVRVSEQTLLEVGRYFRARTLKSRSGR------HQHEIRDSQRGDVRVRRDSSTDSTLVEVSYVPLMDIVFGRKEVKESRRMGS--NQDDKGTDDPSNDWEDERGYEPRRESKALCLPEEYSSEDDG----DSGSCEHCFVDIDRIRAARIAVLETTDALSRPPLFLAAAAGNVPAAKTLIRHGAASACAVDGTGLTPHSVSPSLLMRRVLAAEARKSLCQTLSKRTEDRSLGGCIPDMTSDRKEERELLRERLDHGSE----------LKESSECESLQRDD--NRRMAMWISTLAEDELAQTRA-SEARVDLKTSLHLAATAGLPDSVTDLLGRGIGESGKETVGATQGCAKWDTSSKPSEDIIGRARLSTGHCAYDHHNISRGMPNAATLATDANGWSALHACCTED-STQHYSCALALLGSHDDPNARTNTGKTPLHIAASA-----SGPAKSDVIPMLVSHGTSLEAQDADGLRPIHFAARKGRHIALLALLTAGANPWSVTSRRWNALHYSAASGSLWCTRLLVYWDSDSGVLARQENSAGTTAMDLGRTDDIRLAMSSIWEAAALGETERVSRSCQEGSRSPKDAIGKPWTCPGVNSKTPGLGFTPLHACMAGLAAVTRGDDVSLPCAPPRLLHKSD-KVAQRP---SLYTHLAR--------------RCCKPARRHRGR--VASTRERNDSGTPE-LRGKPPGAFDRRDYAGACRALLSAAADVHALDNRCRTPLALAAASGNVEIVEI 744
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: D7FVS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS9_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.600e-29 Identity = 62/119 (52.10%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 187 LAVGSKNIRMVYALMR-WRRNFSHNLEEELDELDHRRDLFIK--DVVVTSQVSVVSTAKLVEKIDSFEIWLYEERLRVMRVAELSCEECWRRVVTAKDDKGRTPIHWAASVGGENDSLL 534
+AVG+KN+RMV LM+ WRR+ + LE+ELD LDHRRD+FI+ DV T+ + ++ +D FE WL++ER R++RV EL CEECWR+ VT++DD+GRTP+HWAAS +LL
Sbjct: 1 MAVGTKNVRMVKTLMQYWRRDLNQRLEDELDFLDHRRDMFIQGVDVPQTTGGGRPAGKITIDDVDRFERWLFDERRRLVRVTELRCEECWRKSVTSRDDRGRTPLHWAASGTSSEAALL 119
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: UPI0007ACC98D (ankyrin repeat domain-containing protein 53-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACC98D) HSP 1 Score: 58.2 bits (139), Expect = 1.070e-5 Identity = 49/151 (32.45%), Postives = 64/151 (42.38%), Query Frame = 1 Query: 2164 GWSPLHVCCSETLSYAHFHCAVTLL--GSECDPNSRTNDGKTPLHMAACAGDDDNEGRGGNDLIYLLVSHGGDLEAQDGDGLRPLHYAAKTGRHTTLISLLTAGATPCSVTPRGWNALHYSVAFGHPEAARLLS---WW-DSDSGVLGSQK 2598
G S LH+ + H C LL G D NS G+ P+HM A N LIYLL HG + +GL PLH AA G + +L+ GA + RG L S +GH AR L WW D ++ S++
Sbjct: 12 GLSVLHI----AALHGHLDCMELLLEDGGSADVNSSCPHGRRPVHMVLTAQSRPNTHAC---LIYLL-EHGAQINVYTDEGLTPLHLAAAEGLTDSTETLVRNGADIHAQDKRGHTPLDLSRIWGHRLTARFLKDAMWWKDKQKRIMKSKQ 154
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: A0A5N5LVK2_9PEZI (Ankyrin repeat-containing domain protein n=1 Tax=Coniochaeta sp. 2T2.1 TaxID=1571157 RepID=A0A5N5LVK2_9PEZI) HSP 1 Score: 61.6 bits (148), Expect = 1.110e-5 Identity = 48/161 (29.81%), Postives = 75/161 (46.58%), Query Frame = 1 Query: 2083 KSPGVLLETMFNTAPCPRSSFAKADANGWSPLHVCCSETLSYAHFHCAVTLLGSECDPNS---RTNDGKTPLHMAACAGDDDNEGRGGNDLIYLLVSHGGDLEAQDGDGLRPLHYAAKTGRHTTLISLLTAGATPCSVTPRGWNALHYSVAFGHPEAARLL 2556
+S L + + T P + AD +GW P+H+ + + V L E P S R NDGKT LH AA + + L+ G D +A+D +G L A ++G+ +++ +LL GA + T G +ALH++ FG +A R L
Sbjct: 1273 QSTTALAKLLLETGADPLA----ADIDGWLPIHLAAQDR------NLEVLDLLFERAPESLTIRDNDGKTALHFAASS----------PHALMWLLERGVDKDAKDNEGATALISAVRSGKDSSVRTLLANGADIKATTNIGRSALHHAAYFGRLDAGRQL 1413
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: A0A8J2SL70_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL70_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.850e-5 Identity = 65/206 (31.55%), Postives = 92/206 (44.66%), Query Frame = 1 Query: 1 RALRSFLSTRIDLPHEKIV--SHD---VLRAVLRGDTEDLAMVARRENLN---GVAVALTADKRKQTALHLAV--GSKNIRMVYALMRWRRNFSHNLEEELDELDHR-----RDLFIKDVVVTSQVSVVSTAKLVEKIDSFEIWLYEERLRVMRVAELSCEECWRRVVTAKDDKGRTPIHWA-ASVGGENDSLLRALLTTGRADLS 570
R LR +S R DL E I S D VL A GD L A++ + G+ AL AD++ +TA H A G ++ + WR S + ++ +L R RD ++V + + A+ E R +R EL CE WR TA+DD GRTP+H+A A V + +L L TG ADL+
Sbjct: 252 RYLRPRISRR-DLTDEDIAPPSQDARAVLEACFDGDLPALKKAAKKCGFSEGLGLRCALVADQKGRTACHYAALQGRHDVLQSFGEA-WRAQASEEYDRKVSDLRGRLVEASRDCRRRNVEHELRGAYEFAAR--------------EADRELRQRELRCEAAWRTCCTARDDLGRTPLHYAVACVDAAHTALTVKALMTGSADLA 441
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: A0A7R8WMP3_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WMP3_9CRUS) HSP 1 Score: 60.1 bits (144), Expect = 2.410e-5 Identity = 45/147 (30.61%), Postives = 67/147 (45.58%), Query Frame = 1 Query: 2275 GKTPLHMAACAGDDDNEGRGGNDLIYLLV----SHGGD---LEAQDGDGLRPLHYAAKTGRHTTLISLLTAG-ATPCSVTPRGWNALHYSVAFGHPEAARLLSWWDS---DSGVLGSQKNGDGVTPVDLGRSEQVRSATRTIWEAAA 2682
G P+H AA GG D++ + SH GD + AQ DG PLH AA G +L L+ G A P + GW +H + GHPEA R +++ + G + ++++ DG TP+ + R + EA A
Sbjct: 53 GWLPIHFAAF--------NGGPDVVRFFIEYANSHPGDRDMINAQTNDGATPLHLAAAKGDAASLEVLVGEGRADPWIKSKDGWLPIHDAAWSGHPEAVRFFLRYNASHPERGDMLNERDNDGDTPLSCAVRKGRVECVRLLLEAGA 191
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: UPI001901E4A5 (uncharacterized protein n=2 Tax=Botrytis TaxID=33196 RepID=UPI001901E4A5) HSP 1 Score: 60.1 bits (144), Expect = 3.300e-5 Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 2128 CPRSSFAKADANGWSPLHVCCSETLSYAHFHCAVTLLGSECDPNSRTNDGKTPLHMAACAGDDDNEGRGGNDLIYLLVSHGG------DLEAQDGDGLRPLHYAAKTGRHTTLISLLTAGA 2472
CP+ D +G++PLH C+ T Y+ F A+ + G+E N+++ + +TPLH AA GR ++ +L++H D+ AQD DG+ PLH+A +GR ++ L++AGA
Sbjct: 1135 CPKFDVNTKDIDGYTPLHYACA-TSEYSVF--ALIMAGAEM--NAQSFNRRTPLHCAA-------RGRQCG-VLSMLLNHAQRTGSTIDINAQDSDGMTPLHFACISGRPESVSILISAGA 1242
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: A0A4Z1JJ00_9HELO (NACHT domain-containing protein n=2 Tax=Botrytis TaxID=33196 RepID=A0A4Z1JJ00_9HELO) HSP 1 Score: 58.9 bits (141), Expect = 7.410e-5 Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 1 Query: 2128 CPRSSFAKADANGWSPLHVCCSETLSYAHFHCAVTLLGSECDPNSRTNDGKTPLHMAACAGDDDNEGRGGNDLIYLLVSHGG------DLEAQDGDGLRPLHYAAKTGRHTTLISLLTAGA 2472
CP+ D +G++PLH C+ T Y+ F L+ + D N ++ + +TPLH AA GR ++ +L++H D+ AQD DG+ PLH+A +GR ++ L++AGA
Sbjct: 1145 CPKFDVNAKDIDGYTPLHYACA-TSEYSVF----ALITAGADLNFQSFNRRTPLHCAA-------RGRQCG-VLSMLLNHAQRTGSTIDINAQDSDGMTPLHFACISGRPESVSILISAGA 1252
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: UPI001C575F30 (ankyrin repeat domain-containing protein 53 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C575F30) HSP 1 Score: 56.6 bits (135), Expect = 7.470e-5 Identity = 48/144 (33.33%), Postives = 62/144 (43.06%), Query Frame = 1 Query: 2155 DANGWSPLHVCCSETLSYAHFHCAVTLLGSE--CDPNSRTNDGKTPLHMAACAGDDDNEGRGGNDLIYLLVSHGGDLEAQDGDGLRPLHYAAKTGRHTTLISLLTAGATPCSVTPRGWNALHYSVAFGHPEAARLL--SWWDSD 2574
D +G S LH+ + H C LL ++ D NS G+ P+HM A N LIYLL HG + +GL PLH AA G +L+ GA + RG L S +GH AAR L + W D
Sbjct: 64 DKHGLSVLHI----AALHGHLDCIELLLEADGSVDVNSSCPHGRRPVHMVLSAQSRPNTHAC---LIYLL-EHGAQINVSTDEGLTPLHLAAAEGLTDCTETLVRNGADILAQDKRGHTPLVLSRIWGHRLAARFLKDAMWRKD 199
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Match: UPI000719BDFE (ankyrin repeat domain-containing protein 24-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BDFE) HSP 1 Score: 58.5 bits (140), Expect = 8.160e-5 Identity = 37/106 (34.91%), Postives = 49/106 (46.23%), Query Frame = 1 Query: 2257 NSRTNDGKTPLHMAACAGDDDNEGRGGNDLIYLLVSHGGDLEAQDGDGLRPLHYAAKTGRHTTLISLLTAGATPCSVTPRGWNALHYSVAFGHPEAARLLSWWDSD 2574
NS N GKT +H+AA G + L H +L+A D D PLH+AA TG+H + +LL GA P G + Y+V H E +L W D
Sbjct: 223 NSEENTGKTAIHLAAATGHQ-------QVIKELATIHCCNLDALDEDERTPLHWAAVTGQHRCISTLLKLGANPSVRDISGITPMDYAVKSCHTECVKLF--WKKD 319 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10085.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10085.77.1 >prot_H-elongata_contig10085.77.1 ID=prot_H-elongata_contig10085.77.1|Name=mRNA_H-elongata_contig10085.77.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1134bp RALRSFLSTRIDLPHEKIVSHDVLRAVLRGDTEDLAMVARRENLNGVAVAback to top mRNA from alignment at H-elongata_contig10085:4333..9165- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10085.77.1 ID=mRNA_H-elongata_contig10085.77.1|Name=mRNA_H-elongata_contig10085.77.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4833bp|location=Sequence derived from alignment at H-elongata_contig10085:4333..9165- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10085:4333..9165- >mRNA_H-elongata_contig10085.77.1 ID=mRNA_H-elongata_contig10085.77.1|Name=mRNA_H-elongata_contig10085.77.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6804bp|location=Sequence derived from alignment at H-elongata_contig10085:4333..9165- (Himanthalia elongata Himel1 dioecious)back to top |