mRNA_H-elongata_contig10074.67.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10074.67.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI) HSP 1 Score: 551 bits (1421), Expect = 9.300e-185 Identity = 367/594 (61.78%), Postives = 424/594 (71.38%), Query Frame = 1 Query: 16 PQVFSKSLDSETGYWFYENQATGERCWDRPLEGVAPFQPAQPHMEDLIEDQAREHRQRLEREKRLQHIHLRRCILDKQLLAKVERDNTDGSQRVQGLWDEAEKQAARKDGRLSIAWQELPGVSEEHLFGFHTKYG-MRLTTLQLVGLGLAEVPSAIGQHLWSLKSLSFSSNVLRELPDGLCALTDLTDLNLVRNRLISLPERFGILLRLRHLSLAGNRQITRLTKIPPSFGNLVRLDRVILDCNCLRRLPESLGYMRCRVFNVNNNKLAGLPHCFKDMPRLATLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNMVYPPPEVVREGCDRVRGWCLRRLHDRVHARQHNIVIAIQDILKQITSRGLGIPAFFEPDVHIGDNKN-DRYYALIYERLWDTMLPALEREWEVGAAAPGGTVTYFSYDRVEVDRVLQDYRDPTGRVLRTHTQMFRRCACVGADGKRRVCVPPKVGWMCERNATLIKHDVVLKRDQEDRRQTQRECDDIKFRVGFARRLVKDNSETIEGKNTYMRKAIKTAEAIKRKKEVGGVPS 1791
PQ FSK +D ETGYWFYEN ATGER WDRPLEGVAP +P P ++ + D AR RQR ERE R + + +RR DK LL + + ++RVQGLWDEAE+ AARK+G S+AW+++P VSE H+FGF + G ++ L+LVGLGL EVP AIGQ+L SLKSLS SSN L E+PDGLC LT L G M+CR NV+NNKLAGLPHC KDMPRL +S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N+MVYPP EV+ +GCDRVR WC RR+HDRV ARQH IV+A+QDILKQI RGLG PAFFEPDV +G N+ D +YAL+YER WDTMLPALEREW+ G AAP G VT F Y R EVD VL DYRDPTGRVLRT TQMFRRC C+GA+G+RRVCVPPKVGWMCER ATLIKHD++L+R+QE+RR+ E +DI+FRV ARRLVK+ SETIEGK Y +KAI+ AEA+K+KK++G S
Sbjct: 29 PQAFSKHVDPETGYWFYENLATGERHWDRPLEGVAPLRPKSPRPDEKLVDDARHKRQRSERESRRKDMAIRRVQFDKLLLEEGKSAEIKEAERVQGLWDEAEQHAARKEGDFSLAWKQVPSVSESHIFGFPERNGGTKIVNLRLVGLGLTEVPGAIGQNLLSLKSLSLSSNALEEIPDGLCDLTALXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRMKCRWLNVSNNKLAGLPHCLKDMPRLTKISAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNDMVYPPKEVILQGCDRVRAWCYRRMHDRVIARQHTIVMAVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALEREWQTGTAAPRGAVTSFGYSREEVDSVLLDYRDPTGRVLRTKTQMFRRCGCMGANGRRRVCVPPKVGWMCERKATLIKHDIILEREQEERRRQATEREDIEFRVTLARRLVKEGSETIEGKKNYTKKAIRMAEALKKKKQMGDFES 618
BLAST of mRNA_H-elongata_contig10074.67.1 vs. uniprot
Match: A0A6H5KAI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI0_9PHAE) HSP 1 Score: 347 bits (891), Expect = 6.450e-107 Identity = 162/233 (69.53%), Postives = 193/233 (82.83%), Query Frame = 1 Query: 1084 NNMVYPPPEVVREGCDRVRGWCLRRLHDRVHARQHNIVIAIQDILKQITSRGLGIPAFFEPDVHIGDNKN-DRYYALIYERLWDTMLPALEREWEVGAAAPGGTVTYFSYDRVEVDRVLQDYRDPTGRVLRTHTQMFRRCACVGADGKRRVCVPPKVGWMCERNATLIKHDVVLKRDQEDRRQTQRECDDIKFRVGFARRLVKDNSETIEGKNTYMRKAIKTAEAIKRKKEVG 1779
N+MVYPP E++ +GCDRVR WC RR+HDRV ARQH IV+ +QDILKQI RGLG PAFFEPDV +G N+ D +YAL+YER WDTMLPALEREW+ G A P G VT F Y R EVD VL DYRDPTGRVLRT TQMFRRC C+GA+G+RRVCVPPKVGWMCER ATLIKHD++L+R+QE+RR+ E +DI+FRV ARRLVK+ SETIEGK +Y +KAI+ AEA+K+KK++G
Sbjct: 81 NDMVYPPKEIILQGCDRVRAWCHRRMHDRVSARQHTIVMTVQDILKQIHERGLGHPAFFEPDVEVGMNEGTDHFYALVYERFWDTMLPALEREWQTGTAVPRGAVTSFGYSREEVDSVLLDYRDPTGRVLRTKTQMFRRCGCMGANGRRRVCVPPKVGWMCERKATLIKHDIILEREQEERRRQATEREDIEFRVALARRLVKEGSETIEGKKSYTKKAIRMAEALKKKKQMG 313
BLAST of mRNA_H-elongata_contig10074.67.1 vs. uniprot
Match: A0A7S4A2F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A2F7_9STRA) HSP 1 Score: 149 bits (377), Expect = 4.000e-34 Identity = 146/513 (28.46%), Postives = 213/513 (41.52%), Query Frame = 1 Query: 235 ILDKQLLAKVERDNTDGSQRVQGLWDEAEKQA---ARKDGRLSIAWQELPGVSEEHLFGFHTKYGMRLTTLQLVGLGLAEVPSAIGQHLWSLKSLSFSSNVLRELPDGLCALTDLTDLNLVRNRLISLPERFGILLRLRHLSLAGNRQITRLTKIPPSFGNLVRLDRVILDCNCLRRLPESLGYMRCRVFNVNNNKLAGLPHCFKDMPRLATLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN--MVYPPPEVVREGCDRVRGWCLRRLHDRVHARQHNIVIAIQDILKQI--TSRGLGIPAFFEPDVHIGDNKNDRYYALIYERLWDTMLPALEREWEVGAAAPGGTVTYFSYDRVEVDRVLQDYRDPTGRV-LRTHTQMFRRCACVGADGKRRVCVPPKVGWMCERNATLIKHDVVLKRDQEDRRQTQRECDDIKFRVGFARRLVKDNSETIEGKNTYMRKAIKTA 1749
I +K + K RD + ++ + L+D+ A AR+ G L++ + G + ++ FH YG L L+ V GL P G+ L L L+ +SN L ELPD +C L L M C + N+NKL LP C +M L LSXXXXXXXXXXXXXXXXXXXX N M YP P+ + +G + VR W +R + AR+H +V +QD ++Q + +FE V + ++ +++++ WD MLP L W VT + R EV +VL+DY+D G+V ++ MF+RC CV ADG ++VCVPPK GWMC+R A L K V+L+R++ + +RE I+ V AR + EG + ++A+K A
Sbjct: 179 IKEKHAVGKRRRDE-EAARAARALFDKRWGDAFEFAREAGELNML-NKGAGDFPDQIYDFHENYGRPLKALRFVAHGLDRFPERAGKELTQLTQLTLASNRLTELPDSICDLAXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRMTCHTLSFNHNKLVALPRCLANMINLTALSXXXXXXXXXXXXXXXXXXXXTVKLCANIIEELPESISRLPRLKSLWLDHNAPMAALPWNFYMLTSLVELRMDANPGMKYPTPDTLLQGAEAVRNWFRKRQKQALFARKHRVVATMQDFMEQCGEVRPSIAHQGYFEAGV---ERSGAVWFQVVWDKFWDEMLPGLRDAW-AEKRVDKHRVTAMPFSRSEVQKVLEDYKDAEGKVYMKDQVCMFKRCRCVDADGNKKVCVPPKPGWMCKRRADLFKCRVILQREKRMMDERKREEAAIQQAVENARVAATAFCHSEEGIQRFRKRAVKRA 681
BLAST of mRNA_H-elongata_contig10074.67.1 vs. uniprot
Match: A0A7S3MDR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDR4_9STRA) HSP 1 Score: 139 bits (351), Expect = 8.330e-31 Identity = 86/219 (39.27%), Postives = 117/219 (53.42%), Query Frame = 1 Query: 1090 MVYPPPEVVREGCDRVRGWCLR-RLHDRVHARQHNIVIAIQDILKQITSRGLGIPAFFEPDVHIGDNKNDRYYALIYERLWDTMLPALEREWEVGAAAPG-----------GTVTYFSYDRVEVDRVLQDYRDPTGRVLRTHTQMFRRCACVGADGKRRVCVPPKVGWMCERNATLIKHDVVLKRDQEDRRQTQRECD---DIKFRVGFARRLVKDNSE 1701
M+ PPPEV+ +G V + L+D+V AR +V+A Q++LKQI R A+FEPD D DR++AL LW +LP L+R WE AA G +T F Y EV L +Y D G VLR MFRRCACV ++ KRR CVPP G+MC R+ L+K ++V +RD+ DR + D D R + +L D++E
Sbjct: 218 MLDPPPEVMGQGGPAVVAYLKAIYLNDKV-ARMREVVLATQNVLKQIQERDFADSAYFEPDYQRTDKDLDRWFALQLPYLWKDLLPQLKRTWESERAAMGHHRRHKHAAASDDLTSFDYSEQEVMHALTNYSDAVGPVLRMQKAMFRRCACVDSEMKRRPCVPPAPGYMCLRDCVLLKKELVRERDKHDRMWQAYKSDGMRDAMKRADYEAKLYLDSAE 435
BLAST of mRNA_H-elongata_contig10074.67.1 vs. uniprot
Match: A0A7S2D150_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D150_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.990e-15 Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 1393 VTYFSYDRVEVDRVLQDYRDPTGRVLRTHTQ-MFRRCACVGADGKRRVCVPPKVGWMCERNATLIKHDVVLKRDQEDRRQTQRECDDIKFRVGFARRLVKDNSETIEGKNTYMRKA 1737
V F ++R EVD V++ + DP G V T+ +FRRC CV GKRRVCVPPK GWMC+R A L K ++ L+ +++ R + + +++ A + E+ EG+ + R A
Sbjct: 25 VKSFPFERTEVDHVMKTFVDPYGPVSMTNEDTLFRRCCCVDESGKRRVCVPPKKGWMCKRTAFLFKMEICLETEKKARELKKAQEKEVESAGIAAETFARTYCESDEGQIYFRRLA 140
BLAST of mRNA_H-elongata_contig10074.67.1 vs. uniprot
Match: A0A7S2CY75_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY75_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.790e-6 Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 1 Query: 676 RLTKIPPSFGNLVRLDRVILDCNCLRRLPESLGYMRCRVFNVN 804
+LT++P SFGNL+ L+RV+L+ N L RLPES G ++C N+N
Sbjct: 5 QLTELPTSFGNLILLERVVLEANHLTRLPESTGRLQCSYLNLN 47 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10074.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10074.67.1 >prot_H-elongata_contig10074.67.1 ID=prot_H-elongata_contig10074.67.1|Name=mRNA_H-elongata_contig10074.67.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=597bp MLSLSPQVFSKSLDSETGYWFYENQATGERCWDRPLEGVAPFQPAQPHMEback to top mRNA from alignment at H-elongata_contig10074:1099..8059+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10074.67.1 ID=mRNA_H-elongata_contig10074.67.1|Name=mRNA_H-elongata_contig10074.67.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6961bp|location=Sequence derived from alignment at H-elongata_contig10074:1099..8059+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10074:1099..8059+ >mRNA_H-elongata_contig10074.67.1 ID=mRNA_H-elongata_contig10074.67.1|Name=mRNA_H-elongata_contig10074.67.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3582bp|location=Sequence derived from alignment at H-elongata_contig10074:1099..8059+ (Himanthalia elongata Himel1 dioecious)back to top |