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Homology
BLAST of mRNA_H-elongata_contig100479.48.1 vs. uniprot
Match: A0A6H5KID0_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID0_9PHAE) HSP 1 Score: 159 bits (403), Expect = 3.990e-40 Identity = 89/149 (59.73%), Postives = 113/149 (75.84%), Query Frame = 2 Query: 182 SPSFPGTMKVAGYVRPRLGVTKAAETTSAFEVLGLALRYPTSKIYVRAELLAVGGXXXXXXXARGTSKXXXXTGDSSRPSSFDSADVQELFPNLTKLSDARARRSAADKMDAQFEVQKLRQQLESAMNAGDSGRISAIRQELNSLTVAD 628
SPS PGT +G+ RPRLG++K AETT++FE LGLALRYP+S+I+VRAELLA A G DSS SSF+S D+ EL+PNL KL+DA+ RRSA+++MD+QFE+QK+RQQLESAMNAGD RISA+R+ELNSL +A+
Sbjct: 785 SPSVPGTTMGSGFSRPRLGLSKIAETTNSFEALGLALRYPSSRIFVRAELLA--------PPAEGGEAMGRK--DSSSASSFESRDLAELYPNLMKLTDAKERRSASERMDSQFEMQKIRQQLESAMNAGDDDRISALREELNSLVMAE 923
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 152.5 |
| Seed ortholog evalue | 1.5e-34 |
| Seed eggNOG ortholog | 2880.D8LF44 |
| Preferred name | THA1 |
| KEGG rclass | RC00312,RC00372 |
| KEGG ko | ko:K01620 |
| KEGG Reaction | R00751,R06171 |
| KEGG Pathway | ko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230 |
| GOs | GO:0001505,GO:0003674,GO:0003824,GO:0004793,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008732,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0019752,GO:0042133,GO:0042136,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 |
| EggNOG free text desc. | L-allo-threonine aldolase activity |
| EggNOG OGs | COG2008@1,KOG1368@2759 |
| EC | 4.1.2.48 |
| COG Functional cat. | E |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 943 |
| Cds size | 450 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929546.8650935-UTR-H-elongata_contig100479:384..675 | 1622929546.8650935-UTR-H-elongata_contig100479:384..675 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100479 385..675 - |
| 1691679063.683926-UTR-H-elongata_contig100479:384..675 | 1691679063.683926-UTR-H-elongata_contig100479:384..675 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100479 385..675 - |
| 1622929546.9068184-UTR-H-elongata_contig100479:1577..1779 | 1622929546.9068184-UTR-H-elongata_contig100479:1577..1779 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100479 1578..1779 - |
| 1691679063.7266066-UTR-H-elongata_contig100479:1577..1779 | 1691679063.7266066-UTR-H-elongata_contig100479:1577..1779 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig100479 1578..1779 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929546.8786368-CDS-H-elongata_contig100479:675..768 | 1622929546.8786368-CDS-H-elongata_contig100479:675..768 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100479 676..768 - |
| 1691679063.7016766-CDS-H-elongata_contig100479:675..768 | 1691679063.7016766-CDS-H-elongata_contig100479:675..768 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100479 676..768 - |
| 1622929546.891812-CDS-H-elongata_contig100479:1220..1577 | 1622929546.891812-CDS-H-elongata_contig100479:1220..1577 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100479 1221..1577 - |
| 1691679063.7180078-CDS-H-elongata_contig100479:1220..1577 | 1691679063.7180078-CDS-H-elongata_contig100479:1220..1577 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig100479 1221..1577 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100479.48.1 >prot_H-elongata_contig100479.48.1 ID=prot_H-elongata_contig100479.48.1|Name=mRNA_H-elongata_contig100479.48.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MKVAGYVRPRLGVTKAAETTSAFEVLGLALRYPTSKIYVRAELLAVGGGG
GGSGSARGTSKGGGGTGDSSRPSSFDSADVQELFPNLTKLSDARARRSAA
DKMDAQFEVQKLRQQLESAMNAGDSGRISAIRQELNSLTVADKNSAAVH* back to topmRNA from alignment at H-elongata_contig100479:385..1779- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig100479.48.1 ID=mRNA_H-elongata_contig100479.48.1|Name=mRNA_H-elongata_contig100479.48.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1395bp|location=Sequence derived from alignment at H-elongata_contig100479:385..1779- (Himanthalia elongata Himel1 dioecious)
TGCCGCGAACGCCATCGCCTTCCCCGCGGTAACGCCTGCCCAGGTGCCAG
TGTCCTCGCTCGAGACCGCTCCCGCCGAGGCCGTGACCGACAACGTAGCG
GTGACCTCGGCAGAAAAATTAACCCCAGGCCTGAGCGGAGCCGCCGATAG
GGTAGGTGAGATCCCGCACGAGGTCGTTGACTCGCCGTCGTTTCCGGGGA
CAATGAAGGTCGCCGGGTACGTGCGGCCGAGGCTCGGGGTTACGAAGGCC
GCGGAGACCACCAGTGCGTTCGAGGTGCTAGGGCTGGCGCTGAGATACCC
GACTTCGAAGATCTACGTCCGCGCGGAGCTGCTGGCGGTTGGAGGCGGCG
GCGGGGGTAGTGGTTCGGCGCGAGGCACTTCCAAGGGAGGTGGCGGAACG
GGGGATTCTTCTCGTCCGTCGAGCTTCGACTCTGCCGACGTGCAGGAGCT
GTTCCCGAATCTAACGAAACTGTCCGATGCGAGGGCGAGGAGGTCGGCGG
CAGACAAGATGGACGCCCAGTTCGAGGTGCAGAAATTGAGGCAGCAGCTG
GAGAGCGCGGTGAGAGGCGGGCGGTCTGGTTTTGATCACGTTTTCTATCG
TTGTTGGAGTTGACTTGTTGGGTGGACGAGAAGATCGCGTGGCAGCCTAT
CGAATAGCACCGAAGCGTGCTAAGTCAATCATCTTACCGTTTGCGGAGAA
GACGAGTGCCGAGGTGTGTCGCAACTCCATGCTGCGCAGTGGTGACGTCT
TGGGTTGACGACCGGTGCGCTCAAAGCGAGAAACAGCAGCACTAGCTATT
TTTTGTCGGAAAATGTGTCCCTTCGTGATGACGGCCAGTGGTACACCTTC
ACGAACGAACCAATCCTTACCATTCGTAGTGGAAGCGAAAATATGCGGAT
CGAAAGCGGTCCGATCGAACTGGTTCACCGCGTGCTGTTCTGTTAAATTG
CGGGCGTGGTTTATCCCTCCTCCCCCTTCTCCATGTCGGTCGGTCGGTTG
TGCGAGGACAGATGAACGCCGGAGACTCGGGCCGTATATCCGCCATCCGC
CAAGAGCTGAACTCGTTGACAGTCGCGGATAAGAACTCTGCCGCAGTGCA
CTGACCGCAGCGAAATATATATATATATATATATATAGTAGTAGTATGCG
CGCGATCATCATGCGTGTGGGGAGGTCGTTCGAATGCGCGCGCCGCACTC
ATCATCGGGGTCAAACGTTTTGCGAGCGCGGAATATTAGTACGCGACGTG
ACGATTGCGTCGGGTTGGGCGCGGAGGCGGCATGGGGGAAAAGAGCGCCC
TCTGATGCGACATGCTTTTTGTGTAAATGGGCTTCGTTAGGGCGACGGGC
GCGCGCGCATATGCTCGACGCAAGATATCGAGGCTTAGGTACTTT back to topCoding sequence (CDS) from alignment at H-elongata_contig100479:385..1779- >mRNA_H-elongata_contig100479.48.1 ID=mRNA_H-elongata_contig100479.48.1|Name=mRNA_H-elongata_contig100479.48.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig100479:385..1779- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTCGCCGGGTACGTGCGGCCGAGGCTCGGGGTTACGAAGGCCGC
GGAGACCACCAGTGCGTTCGAGGTGCTAGGGCTGGCGCTGAGATACCCGA
CTTCGAAGATCTACGTCCGCGCGGAGCTGCTGGCGGTTGGAGGCGGCGGC
GGGGGTAGTGGTTCGGCGCGAGGCACTTCCAAGGGAGGTGGCGGAACGGG
GGATTCTTCTCGTCCGTCGAGCTTCGACTCTGCCGACGTGCAGGAGCTGT
TCCCGAATCTAACGAAACTGTCCGATGCGAGGGCGAGGAGGTCGGCGGCA
GACAAGATGGACGCCCAGTTCGAGGTGCAGAAATTGAGGCAGCAGCTGGA
GAGCGCGATGAAGGTCGCCGGGTACGTGCGGCCGAGGCTCGGGGTTACGA
AGGCCGCGGAGACCACCAGTGCGTTCGAGGTGCTAGGGCTGGCGCTGAGA
TACCCGACTTCGAAGATCTACGTCCGCGCGGAGCTGCTGGCGGTTGGAGG
CGGCGGCGGGGGTAGTGGTTCGGCGCGAGGCACTTCCAAGGGAGGTGGCG
GAACGGGGGATTCTTCTCGTCCGTCGAGCTTCGACTCTGCCGACGTGCAG
GAGCTGTTCCCGAATCTAACGAAACTGTCCGATGCGAGGGCGAGGAGGTC
GGCGGCAGACAAGATGGACGCCCAGTTCGAGGTGCAGAAATTGAGGCAGC
AGCTGGAGAGCGCGATGAACGCCGGAGACTCGGGCCGTATATCCGCCATC
CGCCAAGAGCTGAACTCGTTGACAGTCGCGGATAAGAACTCTGCCGCAGT
GCACTGAATGAACGCCGGAGACTCGGGCCGTATATCCGCCATCCGCCAAG
AGCTGAACTCGTTGACAGTCGCGGATAAGAACTCTGCCGCAGTGCACTGA back to top
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