mRNA_H-elongata_contig10038.40.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI) HSP 1 Score: 424 bits (1090), Expect = 2.650e-149 Identity = 208/238 (87.39%), Postives = 227/238 (95.38%), Query Frame = 1 Query: 1 LNRYVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEADGAFYSVLSKNSGSG-DEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQVDDT 711 + RYVVSCQVFGKMQKSKK+ADLDKA +IKMLAR+YPGLRIAHVDE G FYSVLSKN+G+G D+MEEEYR+RLPG ILVGEGKPNNQNHA+IFTRGEA+QAIDMNQDA LEDAIKIRQVMEEF+FA+GGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLH+RFHYGHPD+FDR+S++TMGG+SKA KGIHLSEDIFAGFNYVLRGGE+TQADYIQV T Sbjct: 1 MGRYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVMST 238
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI) HSP 1 Score: 292 bits (748), Expect = 2.170e-87 Identity = 145/232 (62.50%), Postives = 184/232 (79.31%), Query Frame = 1 Query: 10 YVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEA-DGAFYSVLSKNSGSGDEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702 YVVSCQ K+ +S K D KAK +++L M+P L++A+V+ DG +SVL + + + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEAVQAIDMNQD +LEDA+K RQ++ EF F GG N RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL +RFHYGHPDLFD++S+MT+GGISKASKGI+LSEDIF GFN++LRGG++TQA+YIQV Sbjct: 1210 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGGFNFILRGGKATQAEYIQV 1436
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE) HSP 1 Score: 263 bits (671), Expect = 5.830e-79 Identity = 132/214 (61.68%), Postives = 166/214 (77.57%), Query Frame = 1 Query: 10 YVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEA-DGAFYSVLSKNSGSGDEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAG 648 YVVSCQ K+ +S K D KAK +++L M+P L++A+V+ DG +SVL + + + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEAVQAIDMNQD +LEDA+K RQ++ EF F GG N RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL +RFHYGHPDLFD++S+MT+GGISKASKGI+LSEDIF G Sbjct: 636 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGG 844
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA) HSP 1 Score: 253 bits (646), Expect = 1.010e-76 Identity = 123/176 (69.89%), Postives = 147/176 (83.52%), Query Frame = 1 Query: 193 MEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFAD------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQ 699 M EEYR+ LPG ILVGEGKPNNQNHA+IFTRGEA+QAIDMNQD +LE+A+K R++++EF F + GG R N+GRIVGFREHVFTH+VS++ANFFSLQE FV+ATQR LD PL IRFHYGHPD+FD+ +++T GGIS+ SKGIHLSEDIFAGF +VLRGG S+Q DYIQ Sbjct: 1 MLEEYRVELPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDGSLEEALKQREMLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIRFHYGHPDVFDKTTAITQGGISRPSKGIHLSEDIFAGFYWVLRGGRSSQLDYIQ 176
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A836C8X3_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X3_9STRA) HSP 1 Score: 254 bits (650), Expect = 3.140e-74 Identity = 138/240 (57.50%), Postives = 172/240 (71.67%), Query Frame = 1 Query: 7 RYVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHV--------DEADGAFYSVLSKNSGSGDEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTG-RGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQ 699 RYVVSCQ+ M+ K + +A YI LA+ +PGL IA+V E YSVL++ SGD ++EE+RI+LPG ILVGEGKPNNQN A++FTRG+AVQAIDMNQD LE+A K R+++ F F G R N G IVGFREH+FTH SAVA +FSLQE FV+ATQR LD+PL IRFHYGHPDLFD+I+++T GG S+ S +HLSEDI AG+ +VLRGG+S Q D+IQ Sbjct: 1094 RYVVSCQILPAMRLKKAK----EAVYIDWLAQNHPGLCIAYVLEVKEDTGGEKTHEHYSVLAR--WSGDSLKEEHRIQLPGTILVGEGKPNNQNQAMVFTRGDAVQAIDMNQDLGLEEAFKQREMLANFRFGGHARGERAHNAGLIVGFREHIFTHAASAVAMYFSLQESGFVTATQRVLDDPLGIRFHYGHPDLFDKITAITQGGNSRPSTKLHLSEDILAGYVWVLRGGDSIQLDFIQ 1327
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH39_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH39_AEGTS) HSP 1 Score: 239 bits (610), Expect = 9.420e-74 Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1 Query: 10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702 YVVSCQV+G MQK K A +KA+Y+ +L MYP LRIA++DE + +YSVL K G GD+ +EE YRI+LPG +GEGKP NQNHA+IFTRGEA+Q IDMNQD LE+A K+R V+EEF T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL +RFHYGHPD+FDR+ +T GGISKASK I+LSEDIF+GFN +RGG T +Y+QV Sbjct: 146 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 381
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT) HSP 1 Score: 241 bits (616), Expect = 2.750e-70 Identity = 129/252 (51.19%), Postives = 172/252 (68.25%), Query Frame = 1 Query: 10 YVVSCQVFG--KMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEA---------DGA--------FYSVLSKNSGSGDE--MEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702 YVVSCQ++G K + K AD + L + +P LR+A+VD+ DG FYSVL K S G E +++ YR++LPG +++GEGKP NQNHA+IFTRGEA+QAIDMNQ LE+A+K+R ++ EF G T IVGFREH+FT +S++A++ +LQE FV+ TQR L NPLHIR HYGHPD+FD+I ++T GG+SKASKGIHLSED++AGFN+ LRGG+ A+Y+QV Sbjct: 313 YVVSCQMYGTHKRNRDPKAADTE------FLLQRFPNLRVAYVDKTSTLSKIPYPDGTSALRETIRFYSVLIKGSKEGGEEAVQQVYRVQLPGDMMLGEGKPENQNHAVIFTRGEALQAIDMNQCGYLEEALKMRNLLGEFRKTPGAT--------IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQHYGHPDVFDKIFALTTGGVSKASKGIHLSEDVYAGFNHTLRGGKVPYAEYVQV 550
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH34_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453DH34_AEGTS) HSP 1 Score: 239 bits (610), Expect = 4.110e-70 Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1 Query: 10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702 YVVSCQV+G MQK K A +KA+Y+ +L MYP LRIA++DE + +YSVL K G GD+ +EE YRI+LPG +GEGKP NQNHA+IFTRGEA+Q IDMNQD LE+A K+R V+EEF T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL +RFHYGHPD+FDR+ +T GGISKASK I+LSEDIF+GFN +RGG T +Y+QV Sbjct: 140 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 375
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH26_AEGTS (Uncharacterized protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453DH26_AEGTS) HSP 1 Score: 239 bits (610), Expect = 6.330e-69 Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1 Query: 10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702 YVVSCQV+G MQK K A +KA+Y+ +L MYP LRIA++DE + +YSVL K G GD+ +EE YRI+LPG +GEGKP NQNHA+IFTRGEA+Q IDMNQD LE+A K+R V+EEF T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL +RFHYGHPD+FDR+ +T GGISKASK I+LSEDIF+GFN +RGG T +Y+QV Sbjct: 587 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 822
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH27_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH27_AEGTS) HSP 1 Score: 239 bits (610), Expect = 6.370e-69 Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1 Query: 10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702 YVVSCQV+G MQK K A +KA+Y+ +L MYP LRIA++DE + +YSVL K G GD+ +EE YRI+LPG +GEGKP NQNHA+IFTRGEA+Q IDMNQD LE+A K+R V+EEF T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL +RFHYGHPD+FDR+ +T GGISKASK I+LSEDIF+GFN +RGG T +Y+QV Sbjct: 591 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 826 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10038.40.1 >prot_H-elongata_contig10038.40.1 ID=prot_H-elongata_contig10038.40.1|Name=mRNA_H-elongata_contig10038.40.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp LNRYVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEADGAback to top mRNA from alignment at H-elongata_contig10038:1527..3359+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10038.40.1 ID=mRNA_H-elongata_contig10038.40.1|Name=mRNA_H-elongata_contig10038.40.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1833bp|location=Sequence derived from alignment at H-elongata_contig10038:1527..3359+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10038:1527..3359+ >mRNA_H-elongata_contig10038.40.1 ID=mRNA_H-elongata_contig10038.40.1|Name=mRNA_H-elongata_contig10038.40.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig10038:1527..3359+ (Himanthalia elongata Himel1 dioecious)back to top |